Wall clock time and date at job start Mon Mar 30 2020 03:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86805 * 120.00598 * 2 1 4 4 H 1.48493 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46741 * 300.00113 * 3 2 1 6 6 H 1.48500 * 109.46846 * 60.00054 * 3 2 1 7 7 C 1.39918 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99880 * 163.99488 * 7 2 1 9 9 C 1.41068 * 119.99940 * 343.98829 * 7 2 1 10 10 C 1.40842 * 120.27769 * 333.69180 * 9 7 2 11 11 C 1.36395 * 120.07762 * 179.97438 * 10 9 7 12 12 C 1.50702 * 119.66851 * 180.02562 * 11 10 9 13 13 F 1.39898 * 109.47331 * 90.00008 * 12 11 10 14 14 F 1.39900 * 109.46955 * 210.00516 * 12 11 10 15 15 F 1.39907 * 109.46985 * 329.99873 * 12 11 10 16 16 C 1.38888 * 120.66367 * 359.97438 * 11 10 9 17 17 C 1.38642 * 120.55489 * 359.97438 * 16 11 10 18 18 N 1.40043 * 120.05383 * 180.02562 * 17 16 11 19 19 C 1.39405 * 119.89426 * 0.02562 * 17 16 11 20 20 N 1.38998 * 120.31574 * 179.97438 * 19 17 16 21 21 H 0.97002 * 119.99331 * 359.97438 * 1 2 3 22 22 H 1.07997 * 119.95813 * 359.69972 * 10 9 7 23 23 H 1.08000 * 119.72573 * 179.97438 * 16 11 10 24 24 H 0.96993 * 120.00108 * 179.97438 * 18 17 16 25 25 H 0.97006 * 119.99762 * 359.97438 * 18 17 16 26 26 H 0.97003 * 119.99782 * 180.02562 * 20 19 17 27 27 H 0.97003 * 120.00336 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7030 1.3462 -0.0006 5 1 1.8844 2.3963 -1.2125 6 1 1.8844 2.3964 1.2125 7 6 2.0084 -1.2118 -0.0005 8 1 3.0571 -1.2298 -0.2585 9 6 1.3440 -2.4099 0.3359 10 6 0.2125 -2.3831 1.1741 11 6 -0.4271 -3.5439 1.4963 12 6 -1.6373 -3.5046 2.3935 13 9 -2.7903 -3.3567 1.6150 14 9 -1.7164 -4.6960 3.1224 15 9 -1.5287 -2.4244 3.2759 16 6 0.0252 -4.7618 1.0051 17 6 1.1358 -4.8192 0.1772 18 7 1.5825 -6.0528 -0.3126 19 6 1.8071 -3.6469 -0.1671 20 7 2.9218 -3.6943 -0.9961 21 1 -0.4849 0.8401 0.0004 22 1 -0.1465 -1.4428 1.5656 23 1 -0.4925 -5.6717 1.2704 24 1 2.3593 -6.0920 -0.8921 25 1 1.1150 -6.8681 -0.0722 26 1 3.3856 -2.8758 -1.2324 27 1 3.2358 -4.5459 -1.3384 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238616461.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:09 Heat of formation + Delta-G solvation = -134.923790 kcal Electronic energy + Delta-G solvation = -17965.345508 eV Core-core repulsion = 14500.291976 eV Total energy + Delta-G solvation = -3465.053532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.22060 -46.75918 -46.67739 -38.33125 -34.42925 -33.62869 -32.38462 -29.09369 -27.48791 -25.42395 -24.02632 -21.12524 -20.16951 -17.95001 -17.55764 -17.49875 -16.63673 -16.22381 -15.66821 -14.79097 -14.73449 -14.12532 -13.64288 -13.57450 -13.18615 -12.96724 -12.89837 -12.79149 -12.53108 -12.37496 -11.97054 -11.50477 -11.14100 -10.99782 -10.55136 -10.12039 -9.73434 -9.66564 -9.47985 -9.05119 -7.10121 -6.75424 -6.00045 -4.24633 2.60990 2.92823 3.09600 3.13024 3.19836 3.71520 3.94281 4.54648 4.63883 4.93294 5.13943 5.26265 5.30641 5.71139 6.27692 6.74322 6.80209 7.06394 7.14401 7.27993 7.62832 7.77089 7.83586 8.32610 8.35513 8.55301 8.70294 8.76890 8.98937 9.04490 10.23254 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.019254 B = 0.010516 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.904244 B = 2662.087660 C = 3871.524672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.087 3.913 10 C -0.116 4.116 11 C -0.172 4.172 12 C 0.508 3.492 13 F -0.190 7.190 14 F -0.194 7.194 15 F -0.187 7.187 16 C -0.220 4.220 17 C 0.153 3.847 18 N -0.895 5.895 19 C 0.073 3.927 20 N -0.881 5.881 21 H 0.280 0.720 22 H 0.129 0.871 23 H 0.099 0.901 24 H 0.382 0.618 25 H 0.386 0.614 26 H 0.394 0.606 27 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.446 -4.733 0.438 4.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.081 3.919 10 C -0.138 4.138 11 C -0.175 4.175 12 C 0.454 3.546 13 F -0.171 7.171 14 F -0.176 7.176 15 F -0.168 7.168 16 C -0.244 4.244 17 C 0.050 3.950 18 N -0.439 5.439 19 C -0.031 4.031 20 N -0.426 5.426 21 H 0.091 0.909 22 H 0.147 0.853 23 H 0.117 0.883 24 H 0.208 0.792 25 H 0.213 0.787 26 H 0.223 0.777 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.095 -4.453 0.548 4.618 hybrid contribution 0.412 0.406 -0.250 0.631 sum 1.508 -4.047 0.297 4.329 Atomic orbital electron populations 1.69829 1.07383 1.29102 1.35813 1.25819 0.94733 1.01073 0.92590 0.86281 0.80723 0.81272 0.78520 1.18617 1.20167 1.19752 1.19138 0.97008 0.90717 1.42233 0.90583 1.16896 0.92785 0.90369 0.91851 1.20546 0.98103 0.95705 0.99445 1.18860 0.97096 0.96491 1.05077 1.18736 0.84494 0.72281 0.79055 1.93141 1.53486 1.95438 1.75041 1.93081 1.96869 1.48157 1.79488 1.93116 1.96296 1.56510 1.70911 1.19233 1.01289 0.95342 1.08540 1.16785 0.95590 0.84274 0.98357 1.42016 1.36449 1.05555 1.59902 1.17543 0.93458 0.92538 0.99575 1.41655 1.33465 1.09332 1.58101 0.90880 0.85332 0.88325 0.79153 0.78746 0.77720 0.80164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.35 10.97 55.55 0.61 -19.74 15 2 C 0.08 1.83 5.16 -17.32 -0.09 1.74 15 3 Si 0.91 18.28 29.59 -169.99 -5.03 13.25 15 4 H -0.26 -5.19 7.11 56.52 0.40 -4.78 15 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.46 -11.49 8.48 -37.88 -0.32 -11.81 15 8 H 0.08 1.78 6.72 -52.48 -0.35 1.43 15 9 C 0.09 2.21 5.57 -106.66 -0.59 1.61 15 10 C -0.12 -2.98 7.95 -39.26 -0.31 -3.30 15 11 C -0.17 -4.06 5.42 -105.04 -0.57 -4.63 15 12 C 0.51 11.07 3.35 36.01 0.12 11.19 15 13 F -0.19 -4.13 17.30 2.25 0.04 -4.09 15 14 F -0.19 -3.92 16.43 2.25 0.04 -3.88 15 15 F -0.19 -4.08 16.40 2.25 0.04 -4.05 15 16 C -0.22 -4.85 9.23 -39.19 -0.36 -5.22 15 17 C 0.15 3.23 6.77 -83.52 -0.57 2.67 15 18 N -0.89 -14.46 9.09 32.53 0.30 -14.17 15 19 C 0.07 1.65 6.81 -83.00 -0.57 1.09 15 20 N -0.88 -16.37 8.97 32.86 0.29 -16.07 15 21 H 0.28 6.59 8.30 -40.82 -0.34 6.25 15 22 H 0.13 3.46 5.71 -52.49 -0.30 3.16 15 23 H 0.10 1.99 7.58 -52.49 -0.40 1.59 15 24 H 0.38 5.33 7.02 -40.82 -0.29 5.04 15 25 H 0.39 5.43 8.85 -40.82 -0.36 5.07 15 26 H 0.39 7.22 7.07 -40.82 -0.29 6.93 15 27 H 0.37 5.69 7.01 -40.82 -0.29 5.41 15 LS Contribution 247.08 15.07 3.72 3.72 Total: -1.00 -27.13 247.08 -4.66 -31.78 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -1.41 Total: 19.89 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.26 Total: -6.66 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 1.20 Total: -49.98 kcal Atomic # 9 Polarization: -12.13 SS G_CDS: 0.11 Total: -12.01 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.13 -4.66 -31.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238616461.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.139 kcal (2) G-P(sol) polarization free energy of solvation -27.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds