Wall clock time and date at job start Mon Mar 30 2020 03:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86805 * 120.00598 * 2 1 4 4 H 1.48493 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46741 * 300.00113 * 3 2 1 6 6 H 1.48500 * 109.46846 * 60.00054 * 3 2 1 7 7 C 1.39918 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99880 * 163.99488 * 7 2 1 9 9 C 1.41068 * 119.99940 * 343.98829 * 7 2 1 10 10 C 1.40842 * 120.27769 * 333.69180 * 9 7 2 11 11 C 1.36395 * 120.07762 * 179.97438 * 10 9 7 12 12 C 1.50702 * 119.66851 * 180.02562 * 11 10 9 13 13 F 1.39898 * 109.47331 * 90.00008 * 12 11 10 14 14 F 1.39900 * 109.46955 * 210.00516 * 12 11 10 15 15 F 1.39907 * 109.46985 * 329.99873 * 12 11 10 16 16 C 1.38888 * 120.66367 * 359.97438 * 11 10 9 17 17 C 1.38642 * 120.55489 * 359.97438 * 16 11 10 18 18 N 1.40043 * 120.05383 * 180.02562 * 17 16 11 19 19 C 1.39405 * 119.89426 * 0.02562 * 17 16 11 20 20 N 1.38998 * 120.31574 * 179.97438 * 19 17 16 21 21 H 0.97002 * 119.99331 * 359.97438 * 1 2 3 22 22 H 1.07997 * 119.95813 * 359.69972 * 10 9 7 23 23 H 1.08000 * 119.72573 * 179.97438 * 16 11 10 24 24 H 0.96993 * 120.00108 * 179.97438 * 18 17 16 25 25 H 0.97006 * 119.99762 * 359.97438 * 18 17 16 26 26 H 0.97003 * 119.99782 * 180.02562 * 20 19 17 27 27 H 0.97003 * 120.00336 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7030 1.3462 -0.0006 5 1 1.8844 2.3963 -1.2125 6 1 1.8844 2.3964 1.2125 7 6 2.0084 -1.2118 -0.0005 8 1 3.0571 -1.2298 -0.2585 9 6 1.3440 -2.4099 0.3359 10 6 0.2125 -2.3831 1.1741 11 6 -0.4271 -3.5439 1.4963 12 6 -1.6373 -3.5046 2.3935 13 9 -2.7903 -3.3567 1.6150 14 9 -1.7164 -4.6960 3.1224 15 9 -1.5287 -2.4244 3.2759 16 6 0.0252 -4.7618 1.0051 17 6 1.1358 -4.8192 0.1772 18 7 1.5825 -6.0528 -0.3126 19 6 1.8071 -3.6469 -0.1671 20 7 2.9218 -3.6943 -0.9961 21 1 -0.4849 0.8401 0.0004 22 1 -0.1465 -1.4428 1.5656 23 1 -0.4925 -5.6717 1.2704 24 1 2.3593 -6.0920 -0.8921 25 1 1.1150 -6.8681 -0.0722 26 1 3.3856 -2.8758 -1.2324 27 1 3.2358 -4.5459 -1.3384 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238616461.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:09 Heat of formation + Delta-G solvation = -152.763948 kcal Electronic energy + Delta-G solvation = -17966.119115 eV Core-core repulsion = 14500.291976 eV Total energy + Delta-G solvation = -3465.827140 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.94947 -48.46556 -48.42120 -40.05149 -36.12323 -35.34071 -34.01800 -30.84436 -29.13860 -27.24974 -25.75493 -22.88729 -21.90427 -19.67827 -19.29316 -19.20007 -18.23290 -17.99633 -17.35359 -16.47853 -16.24996 -15.74778 -15.34928 -15.29343 -14.90730 -14.69413 -14.62601 -14.49590 -14.27592 -14.09236 -13.68144 -13.20937 -12.79509 -12.73855 -12.17677 -11.90769 -11.47134 -11.29653 -11.20369 -10.77485 -8.86900 -8.53893 -7.61026 -6.09282 0.83360 1.17354 1.44643 1.54959 1.57950 1.96854 2.26856 2.77118 3.10775 3.27324 3.45139 3.52414 3.69001 3.91491 4.59146 4.93620 5.10147 5.27801 5.42348 5.54528 5.87146 5.96438 6.06833 6.52261 6.74864 6.91735 6.99142 7.30345 7.31359 7.53161 8.46415 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.019254 B = 0.010516 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.904244 B = 2662.087660 C = 3871.524672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.484 4.484 8 H 0.084 0.916 9 C 0.053 3.947 10 C -0.143 4.143 11 C -0.187 4.187 12 C 0.514 3.486 13 F -0.190 7.190 14 F -0.182 7.182 15 F -0.190 7.190 16 C -0.220 4.220 17 C 0.153 3.847 18 N -0.876 5.876 19 C 0.069 3.931 20 N -0.868 5.868 21 H 0.283 0.717 22 H 0.105 0.895 23 H 0.120 0.880 24 H 0.395 0.605 25 H 0.400 0.600 26 H 0.396 0.604 27 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.485 -5.838 -0.060 6.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.177 1.177 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.515 4.515 8 H 0.102 0.898 9 C 0.047 3.953 10 C -0.164 4.164 11 C -0.190 4.190 12 C 0.460 3.540 13 F -0.172 7.172 14 F -0.164 7.164 15 F -0.171 7.171 16 C -0.244 4.244 17 C 0.048 3.952 18 N -0.422 5.422 19 C -0.037 4.037 20 N -0.413 5.413 21 H 0.093 0.907 22 H 0.123 0.877 23 H 0.138 0.862 24 H 0.224 0.776 25 H 0.229 0.771 26 H 0.225 0.775 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.170 -5.623 0.021 6.027 hybrid contribution 0.093 0.569 -0.110 0.587 sum 2.262 -5.054 -0.089 5.538 Atomic orbital electron populations 1.69919 1.08917 1.29951 1.37362 1.26638 0.95356 1.04240 0.91877 0.85220 0.79636 0.76903 0.78287 1.17712 1.19708 1.19932 1.19404 0.97453 0.91402 1.43281 0.89828 1.17226 0.93471 0.91841 0.92774 1.20425 0.99469 0.95502 1.01053 1.19045 0.97670 0.96627 1.05704 1.18518 0.84007 0.72575 0.78927 1.93135 1.53426 1.95488 1.75152 1.93098 1.96799 1.47328 1.79137 1.93108 1.96296 1.56812 1.70929 1.19541 1.01433 0.95465 1.07930 1.16867 0.94995 0.85631 0.97704 1.41877 1.36697 1.04361 1.59224 1.17678 0.94197 0.92261 0.99523 1.41556 1.32165 1.10552 1.57017 0.90692 0.87701 0.86224 0.77570 0.77057 0.77469 0.78048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.97 10.97 21.83 0.24 -43.73 15 2 C 0.03 1.60 5.16 85.24 0.44 2.04 15 3 Si 0.98 37.81 29.59 68.60 2.03 39.84 15 4 H -0.25 -9.33 7.11 99.48 0.71 -8.63 15 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 15 6 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 7 C -0.48 -24.43 8.48 23.37 0.20 -24.23 15 8 H 0.08 3.91 6.72 -2.91 -0.02 3.89 15 9 C 0.05 2.71 5.57 -21.19 -0.12 2.59 15 10 C -0.14 -7.48 7.95 22.48 0.18 -7.30 15 11 C -0.19 -8.81 5.42 -20.14 -0.11 -8.92 15 12 C 0.51 22.23 3.35 71.24 0.24 22.47 15 13 F -0.19 -8.25 17.30 44.97 0.78 -7.48 15 14 F -0.18 -7.09 16.43 44.97 0.74 -6.35 15 15 F -0.19 -8.40 16.40 44.97 0.74 -7.66 15 16 C -0.22 -9.32 9.23 22.52 0.21 -9.11 15 17 C 0.15 6.14 6.77 38.21 0.26 6.40 15 18 N -0.88 -25.23 9.09 -51.00 -0.46 -25.69 15 19 C 0.07 3.05 6.81 39.05 0.27 3.32 15 20 N -0.87 -30.47 8.97 -49.96 -0.45 -30.92 15 21 H 0.28 13.73 8.30 -92.71 -0.77 12.96 15 22 H 0.11 5.91 5.71 -2.91 -0.02 5.90 15 23 H 0.12 4.49 7.58 -2.91 -0.02 4.47 15 24 H 0.40 9.50 7.02 -92.71 -0.65 8.85 15 25 H 0.40 9.68 8.85 -92.70 -0.82 8.86 15 26 H 0.40 13.88 7.07 -92.71 -0.66 13.22 15 27 H 0.39 10.76 7.01 -92.71 -0.65 10.11 15 Total: -1.00 -58.15 247.08 3.69 -54.46 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: -1.48 Total: 40.27 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 1.56 Total: -12.75 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -0.67 Total: -100.34 kcal Atomic # 9 Polarization: -23.74 SS G_CDS: 2.25 Total: -21.49 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -58.15 3.69 -54.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238616461.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.301 kcal (2) G-P(sol) polarization free energy of solvation -58.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds