Wall clock time and date at job start Mon Mar 30 2020 04:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99896 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00410 * 3 2 1 6 6 H 1.48498 * 109.47011 * 150.00031 * 3 2 1 7 7 C 1.38687 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99664 * 359.97438 * 7 2 1 9 9 N 1.36953 * 119.99883 * 180.27446 * 7 2 1 10 10 C 1.38218 * 119.99801 * 179.71882 * 9 7 2 11 11 N 1.30383 * 125.70154 * 0.03325 * 10 9 7 12 12 N 1.40170 * 108.00555 * 179.97438 * 11 10 9 13 13 C 1.39921 * 126.27751 * 179.97438 * 12 11 10 14 14 C 1.38924 * 120.06777 * 179.74765 * 13 12 11 15 15 C 1.38099 * 119.91953 * 179.70252 * 14 13 12 16 16 C 1.38294 * 120.07319 * 0.57622 * 15 14 13 17 17 C 1.38293 * 120.15164 * 359.72321 * 16 15 14 18 18 C 1.38099 * 120.07398 * 359.97438 * 17 16 15 19 19 C 1.34900 * 107.43481 * 359.97438 * 12 11 10 20 20 O 1.21788 * 126.18734 * 180.02562 * 19 12 11 21 21 N 1.34787 * 107.62059 * 359.76928 * 19 12 11 22 22 H 0.96996 * 125.82612 * 180.25095 * 21 19 12 23 23 H 0.97005 * 120.00091 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99786 * 359.72520 * 9 7 2 25 25 H 1.07995 * 120.04207 * 0.02562 * 14 13 12 26 26 H 1.07996 * 119.96135 * 180.32501 * 15 14 13 27 27 H 1.08002 * 119.92600 * 179.74764 * 16 15 14 28 28 H 1.08001 * 119.96510 * 179.97438 * 17 16 15 29 29 H 1.07996 * 120.03586 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0098 -1.2011 -0.0005 8 1 1.4698 -2.1364 -0.0005 9 7 3.3794 -1.2010 0.0051 10 6 4.0704 -2.3980 0.0105 11 7 3.5339 -3.5863 0.0101 12 7 4.5706 -4.5298 0.0160 13 6 4.4236 -5.9213 0.0181 14 6 5.5462 -6.7397 0.0188 15 6 5.3976 -8.1126 0.0271 16 6 4.1333 -8.6729 0.0226 17 6 3.0138 -7.8611 0.0157 18 6 3.1551 -6.4873 0.0136 19 6 5.7357 -3.8500 0.0193 20 8 6.8521 -4.3366 0.0242 21 7 5.4408 -2.5348 0.0104 22 1 6.0840 -1.8087 0.0069 23 1 -0.4850 0.8401 0.0004 24 1 3.8643 -0.3609 0.0055 25 1 6.5338 -6.3028 0.0181 26 1 6.2698 -8.7495 0.0329 27 1 4.0199 -9.7470 0.0250 28 1 2.0278 -8.3018 0.0118 29 1 2.2804 -5.8539 0.0086 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238618491.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:36 Heat of formation + Delta-G solvation = 86.294112 kcal Electronic energy + Delta-G solvation = -16859.173280 eV Core-core repulsion = 13977.861967 eV Total energy + Delta-G solvation = -2881.311313 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.82341 -38.74763 -37.17770 -35.47918 -33.90296 -31.94638 -30.66376 -30.43110 -28.07452 -25.08540 -23.29827 -22.32578 -20.80126 -20.55523 -19.05513 -17.64791 -16.73170 -16.30169 -16.13710 -15.62608 -15.18231 -14.70176 -13.93925 -13.74987 -13.25262 -13.08391 -12.95169 -12.73407 -12.40290 -11.76122 -11.41237 -10.96772 -10.94923 -10.91539 -10.65995 -10.19296 -10.10562 -9.45283 -8.95127 -8.68075 -8.37940 -7.16800 -6.52597 -4.00674 1.49342 1.67600 2.48702 2.83566 2.89851 2.99969 3.07089 3.23469 3.28691 3.91090 4.19058 4.79408 4.97365 5.03904 5.19832 5.43096 5.49789 5.70392 5.93858 5.95274 6.22294 6.33051 6.63172 6.65123 6.81280 6.85404 6.98367 7.26347 7.40516 7.85611 8.22629 8.52404 8.56230 9.03176 9.13842 10.58736 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.035590 B = 0.005853 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.538147 B = 4782.356976 C = 5559.048811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.296 4.296 8 H 0.128 0.872 9 N -0.553 5.553 10 C 0.503 3.497 11 N -0.365 5.365 12 N -0.393 5.393 13 C 0.210 3.790 14 C -0.161 4.161 15 C -0.097 4.097 16 C -0.155 4.155 17 C -0.098 4.098 18 C -0.132 4.132 19 C 0.662 3.338 20 O -0.566 6.566 21 N -0.678 5.678 22 H 0.428 0.572 23 H 0.277 0.723 24 H 0.389 0.611 25 H 0.149 0.851 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 -7.202 0.002 10.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.425 4.425 8 H 0.146 0.854 9 N -0.182 5.182 10 C 0.142 3.858 11 N -0.212 5.212 12 N -0.201 5.201 13 C 0.115 3.885 14 C -0.182 4.182 15 C -0.116 4.116 16 C -0.174 4.174 17 C -0.117 4.117 18 C -0.152 4.152 19 C 0.361 3.639 20 O -0.442 6.442 21 N -0.334 5.334 22 H 0.269 0.731 23 H 0.088 0.912 24 H 0.225 0.775 25 H 0.166 0.834 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.997 -7.942 -0.001 10.585 hybrid contribution 1.449 2.298 0.030 2.717 sum 8.446 -5.644 0.029 10.159 Atomic orbital electron populations 1.69682 1.05306 1.27895 1.48099 1.24878 0.95543 0.97897 0.97586 0.86664 0.79649 0.84086 0.79077 1.19361 1.19745 1.19647 1.19309 0.76933 0.97332 1.48941 0.85415 1.39989 1.06455 0.99890 1.71842 1.19899 0.78282 0.90018 0.97643 1.78040 1.05818 0.91912 1.45385 1.45603 1.04487 1.04101 1.65923 1.17313 0.94728 0.77665 0.98843 1.21405 0.99054 0.93440 1.04343 1.20885 0.97308 0.93843 0.99534 1.21052 0.92688 0.99499 1.04129 1.20953 0.98722 0.92689 0.99339 1.20932 0.96259 0.95165 1.02880 1.16421 0.85117 0.81308 0.81039 1.90939 1.21594 1.71986 1.59668 1.43497 1.07619 1.08807 1.73442 0.73108 0.91185 0.77461 0.83355 0.85964 0.86399 0.85775 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.34 13.97 55.48 0.78 -22.57 15 2 C 0.05 1.14 5.50 -17.47 -0.10 1.04 15 3 Si 0.88 17.62 27.74 -169.99 -4.71 12.90 15 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 6 H -0.27 -4.92 6.51 56.52 0.37 -4.55 15 7 C -0.30 -7.35 10.27 -15.10 -0.16 -7.50 15 8 H 0.13 3.56 7.60 -52.49 -0.40 3.16 15 9 N -0.55 -11.62 5.22 -12.14 -0.06 -11.68 15 10 C 0.50 10.37 8.91 -318.65 -2.84 7.53 15 11 N -0.37 -8.11 11.14 30.35 0.34 -7.77 15 12 N -0.39 -8.14 3.79 -14.14 -0.05 -8.19 15 13 C 0.21 3.94 6.69 -83.66 -0.56 3.38 15 14 C -0.16 -2.72 9.39 -39.38 -0.37 -3.09 15 15 C -0.10 -1.32 10.04 -39.61 -0.40 -1.72 15 16 C -0.15 -1.96 10.04 -39.54 -0.40 -2.36 15 17 C -0.10 -1.36 10.04 -39.61 -0.40 -1.76 15 18 C -0.13 -2.25 9.67 -39.38 -0.38 -2.63 15 19 C 0.66 13.25 8.88 -86.80 -0.77 12.48 15 20 O -0.57 -11.76 15.25 5.11 0.08 -11.68 15 21 N -0.68 -11.97 6.09 -16.79 -0.10 -12.07 15 22 H 0.43 5.87 8.96 -40.82 -0.37 5.50 15 23 H 0.28 6.89 8.31 -40.82 -0.34 6.55 15 24 H 0.39 7.17 5.87 -40.82 -0.24 6.93 15 25 H 0.15 2.65 5.49 -52.49 -0.29 2.37 15 26 H 0.12 1.32 8.06 -52.49 -0.42 0.90 15 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 15 28 H 0.12 1.39 8.06 -52.49 -0.42 0.96 15 29 H 0.14 2.51 7.71 -52.49 -0.40 2.10 15 LS Contribution 261.48 15.07 3.94 3.94 Total: -1.00 -28.88 261.48 -8.30 -37.18 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -2.13 Total: 14.57 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -6.36 Total: 5.38 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 0.89 Total: -62.29 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -4.71 Total: 12.90 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.88 -8.30 -37.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238618491.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.471 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds