Wall clock time and date at job start Mon Mar 30 2020 04:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99896 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00410 * 3 2 1 6 6 H 1.48498 * 109.47011 * 150.00031 * 3 2 1 7 7 C 1.38687 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99664 * 359.97438 * 7 2 1 9 9 N 1.36953 * 119.99883 * 180.27446 * 7 2 1 10 10 C 1.38218 * 119.99801 * 179.71882 * 9 7 2 11 11 N 1.30383 * 125.70154 * 0.03325 * 10 9 7 12 12 N 1.40170 * 108.00555 * 179.97438 * 11 10 9 13 13 C 1.39921 * 126.27751 * 179.97438 * 12 11 10 14 14 C 1.38924 * 120.06777 * 179.74765 * 13 12 11 15 15 C 1.38099 * 119.91953 * 179.70252 * 14 13 12 16 16 C 1.38294 * 120.07319 * 0.57622 * 15 14 13 17 17 C 1.38293 * 120.15164 * 359.72321 * 16 15 14 18 18 C 1.38099 * 120.07398 * 359.97438 * 17 16 15 19 19 C 1.34900 * 107.43481 * 359.97438 * 12 11 10 20 20 O 1.21788 * 126.18734 * 180.02562 * 19 12 11 21 21 N 1.34787 * 107.62059 * 359.76928 * 19 12 11 22 22 H 0.96996 * 125.82612 * 180.25095 * 21 19 12 23 23 H 0.97005 * 120.00091 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99786 * 359.72520 * 9 7 2 25 25 H 1.07995 * 120.04207 * 0.02562 * 14 13 12 26 26 H 1.07996 * 119.96135 * 180.32501 * 15 14 13 27 27 H 1.08002 * 119.92600 * 179.74764 * 16 15 14 28 28 H 1.08001 * 119.96510 * 179.97438 * 17 16 15 29 29 H 1.07996 * 120.03586 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0098 -1.2011 -0.0005 8 1 1.4698 -2.1364 -0.0005 9 7 3.3794 -1.2010 0.0051 10 6 4.0704 -2.3980 0.0105 11 7 3.5339 -3.5863 0.0101 12 7 4.5706 -4.5298 0.0160 13 6 4.4236 -5.9213 0.0181 14 6 5.5462 -6.7397 0.0188 15 6 5.3976 -8.1126 0.0271 16 6 4.1333 -8.6729 0.0226 17 6 3.0138 -7.8611 0.0157 18 6 3.1551 -6.4873 0.0136 19 6 5.7357 -3.8500 0.0193 20 8 6.8521 -4.3366 0.0242 21 7 5.4408 -2.5348 0.0104 22 1 6.0840 -1.8087 0.0069 23 1 -0.4850 0.8401 0.0004 24 1 3.8643 -0.3609 0.0055 25 1 6.5338 -6.3028 0.0181 26 1 6.2698 -8.7495 0.0329 27 1 4.0199 -9.7470 0.0250 28 1 2.0278 -8.3018 0.0118 29 1 2.2804 -5.8539 0.0086 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238618491.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:36 Heat of formation + Delta-G solvation = 69.572283 kcal Electronic energy + Delta-G solvation = -16859.898393 eV Core-core repulsion = 13977.861967 eV Total energy + Delta-G solvation = -2882.036426 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.41152 -40.01149 -38.78746 -37.15938 -35.41022 -33.77499 -32.00938 -31.76600 -29.58708 -26.88173 -24.69723 -23.69355 -22.25035 -22.12600 -20.68246 -19.34589 -18.10802 -17.84891 -17.72345 -16.95272 -16.81341 -16.28612 -15.27018 -14.95915 -14.94340 -14.53325 -14.31733 -14.21410 -14.16938 -13.13584 -13.01512 -12.51284 -12.34408 -12.14603 -12.10398 -11.97039 -11.70613 -11.01577 -10.67152 -9.92510 -9.87621 -8.71151 -8.40143 -5.94854 0.20895 0.47647 1.01484 1.26375 1.32807 1.40190 1.51995 1.66100 1.67883 2.22391 2.95062 3.09057 3.28463 3.62673 4.09288 4.19760 4.36287 4.53757 4.58325 4.64281 4.78135 5.13418 5.24417 5.41772 5.48261 5.55514 5.64832 5.68738 6.03934 6.20280 6.44560 6.75592 6.97737 7.16929 7.42456 8.74946 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.035590 B = 0.005853 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.538147 B = 4782.356976 C = 5559.048811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.006 4.006 3 Si 0.953 3.047 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.236 1.236 7 C -0.303 4.303 8 H 0.082 0.918 9 N -0.552 5.552 10 C 0.511 3.489 11 N -0.393 5.393 12 N -0.398 5.398 13 C 0.167 3.833 14 C -0.172 4.172 15 C -0.090 4.090 16 C -0.136 4.136 17 C -0.093 4.093 18 C -0.151 4.151 19 C 0.655 3.345 20 O -0.576 6.576 21 N -0.655 5.655 22 H 0.447 0.553 23 H 0.280 0.720 24 H 0.405 0.595 25 H 0.135 0.865 26 H 0.158 0.842 27 H 0.162 0.838 28 H 0.154 0.846 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.420 -8.206 0.056 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.207 4.207 3 Si 0.774 3.226 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.160 1.160 7 C -0.433 4.433 8 H 0.100 0.900 9 N -0.184 5.184 10 C 0.147 3.853 11 N -0.238 5.238 12 N -0.207 5.207 13 C 0.073 3.927 14 C -0.193 4.193 15 C -0.108 4.108 16 C -0.155 4.155 17 C -0.112 4.112 18 C -0.171 4.171 19 C 0.354 3.646 20 O -0.453 6.453 21 N -0.313 5.313 22 H 0.292 0.708 23 H 0.090 0.910 24 H 0.244 0.756 25 H 0.153 0.847 26 H 0.175 0.825 27 H 0.180 0.820 28 H 0.171 0.829 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.903 -8.981 0.055 12.647 hybrid contribution 0.874 2.288 0.009 2.449 sum 9.778 -6.693 0.064 11.849 Atomic orbital electron populations 1.69838 1.07519 1.29162 1.50073 1.25735 0.96294 1.01940 0.96694 0.85509 0.79433 0.77970 0.79676 1.18499 1.20219 1.15986 1.18929 0.78504 0.96072 1.49788 0.89987 1.39620 1.05150 1.00555 1.73069 1.19850 0.79347 0.89630 0.96443 1.77949 1.07834 0.93240 1.44798 1.45810 1.04001 1.04779 1.66131 1.17786 0.96140 0.77096 1.01645 1.21445 0.97712 0.94849 1.05275 1.21323 0.99295 0.92621 0.97568 1.21552 0.91491 1.01518 1.00931 1.21333 1.00917 0.91207 0.97699 1.20957 0.94985 0.96716 1.04472 1.16526 0.84978 0.81767 0.81363 1.90929 1.21714 1.72185 1.60498 1.43308 1.06732 1.08841 1.72438 0.70795 0.91046 0.75630 0.84721 0.82475 0.82040 0.82868 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.43 13.97 21.63 0.30 -51.13 15 2 C -0.01 -0.31 5.50 84.83 0.47 0.15 15 3 Si 0.95 35.64 27.74 68.60 1.90 37.54 15 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 5 H -0.28 -10.54 7.11 99.48 0.71 -9.83 15 6 H -0.24 -7.42 6.51 99.48 0.65 -6.78 15 7 C -0.30 -15.56 10.27 84.00 0.86 -14.70 15 8 H 0.08 4.89 7.60 -2.91 -0.02 4.87 15 9 N -0.55 -23.12 5.22 -192.33 -1.00 -24.13 15 10 C 0.51 21.20 8.91 260.03 2.32 23.52 15 11 N -0.39 -18.08 11.14 -57.89 -0.65 -18.73 15 12 N -0.40 -16.85 3.79 -316.74 -1.20 -18.05 15 13 C 0.17 6.35 6.69 38.18 0.26 6.61 15 14 C -0.17 -5.65 9.39 22.40 0.21 -5.44 15 15 C -0.09 -2.16 10.04 22.25 0.22 -1.94 15 16 C -0.14 -2.90 10.04 22.30 0.22 -2.67 15 17 C -0.09 -2.37 10.04 22.25 0.22 -2.14 15 18 C -0.15 -5.21 9.67 22.40 0.22 -5.00 15 19 C 0.66 26.24 8.88 179.01 1.59 27.83 15 20 O -0.58 -23.81 15.25 -4.63 -0.07 -23.88 15 21 N -0.66 -22.70 6.09 -325.21 -1.98 -24.69 15 22 H 0.45 11.48 8.96 -92.71 -0.83 10.65 15 23 H 0.28 14.37 8.31 -92.70 -0.77 13.59 15 24 H 0.40 14.16 5.87 -92.71 -0.54 13.61 15 25 H 0.14 4.79 5.49 -2.91 -0.02 4.77 15 26 H 0.16 2.68 8.06 -2.91 -0.02 2.66 15 27 H 0.16 2.13 8.06 -2.91 -0.02 2.11 15 28 H 0.15 2.94 8.06 -2.91 -0.02 2.92 15 29 H 0.12 4.46 7.71 -2.91 -0.02 4.44 15 Total: -1.00 -66.19 261.48 3.68 -62.52 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -0.22 Total: 34.32 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: 6.59 Total: 26.22 kcal Atomic # 7 Polarization: -132.19 SS G_CDS: -4.53 Total: -136.72 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.07 Total: -23.88 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 1.90 Total: 37.54 kcal Total: -66.19 3.68 -62.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238618491.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.090 kcal (2) G-P(sol) polarization free energy of solvation -66.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds