Wall clock time and date at job start Mon Mar 30 2020 03:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46813 * 237.54871 * 3 2 1 5 5 C 1.38848 * 119.99981 * 180.02562 * 4 3 2 6 6 C 1.38944 * 120.17859 * 354.28060 * 5 4 3 7 7 C 1.37960 * 120.07145 * 179.97438 * 6 5 4 8 8 C 1.38635 * 120.44392 * 0.03104 * 7 6 5 9 9 C 1.37722 * 120.36217 * 359.97438 * 8 7 6 10 10 C 1.39836 * 119.91365 * 359.73867 * 9 8 7 11 11 C 1.47240 * 120.21320 * 180.27801 * 10 9 8 12 12 O 1.21561 * 119.99750 * 185.82840 * 11 10 9 13 13 O 1.34786 * 120.00255 * 5.82895 * 11 10 9 14 14 C 1.34866 * 117.00072 * 180.02562 * 13 11 10 15 15 H 1.07996 * 119.99991 * 359.97438 * 14 13 11 16 16 C 1.38796 * 119.99989 * 180.02562 * 14 13 11 17 17 N 1.31421 * 119.99944 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00078 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47108 * 59.99629 * 18 16 14 20 20 H 1.48494 * 109.47413 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47019 * 299.99899 * 18 16 14 22 22 H 1.08995 * 109.47528 * 357.54595 * 3 2 1 23 23 H 1.09004 * 109.47313 * 117.54848 * 3 2 1 24 24 H 0.96996 * 120.00379 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.96713 * 359.96534 * 6 5 4 26 26 H 1.08002 * 119.78192 * 180.02562 * 7 6 5 27 27 H 1.07992 * 119.82325 * 179.97438 * 8 7 6 28 28 H 1.07998 * 120.04636 * 180.02562 * 9 8 7 29 29 H 0.97005 * 120.00010 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.7420 1.1656 5 6 4.4610 0.8793 1.3794 6 6 5.3665 0.2171 0.5596 7 6 6.7223 0.3555 0.7737 8 6 7.1927 1.1530 1.8056 9 6 6.3113 1.8174 2.6292 10 6 4.9340 1.6927 2.4220 11 6 3.9859 2.4049 3.2947 12 8 2.7912 2.2117 3.1799 13 8 4.4425 3.2711 4.2210 14 6 3.5214 3.8895 4.9878 15 1 2.4715 3.6814 4.8441 16 6 3.9228 4.7943 5.9608 17 7 5.2004 5.0479 6.1352 18 14 2.6470 5.6514 7.0224 19 1 1.8673 4.6365 7.7758 20 1 3.3284 6.5609 7.9781 21 1 1.7308 6.4375 6.1576 22 1 2.9719 -1.0258 0.0440 23 1 2.9712 0.4761 -0.9112 24 1 2.4655 1.1377 1.7875 25 1 5.0086 -0.4067 -0.2462 26 1 7.4220 -0.1610 0.1333 27 1 8.2561 1.2538 1.9644 28 1 6.6833 2.4377 3.4312 29 1 5.4810 5.6800 6.8155 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238624884.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:47 Heat of formation + Delta-G solvation = -36.897338 kcal Electronic energy + Delta-G solvation = -16683.055415 eV Core-core repulsion = 13764.109369 eV Total energy + Delta-G solvation = -2918.946046 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.40104 -39.83043 -38.08080 -37.29497 -36.06507 -34.32385 -32.18106 -30.96871 -28.08757 -27.27888 -24.84043 -22.74326 -21.98872 -19.91408 -19.21662 -18.78561 -17.79104 -17.05462 -16.63532 -16.47810 -16.15115 -16.10335 -15.43904 -15.06699 -14.64884 -14.22441 -14.11267 -13.83968 -13.63479 -13.52051 -13.25144 -12.94617 -12.71895 -12.41780 -12.19539 -12.12295 -11.90453 -11.05771 -10.90216 -10.72904 -9.82870 -8.56804 -8.41211 -6.33692 0.05922 0.75947 1.31031 1.31423 1.37294 1.47039 1.63203 1.89427 2.10298 2.71144 2.84680 2.90681 2.92265 3.15257 4.01855 4.28698 4.37518 4.47301 4.50702 4.62988 4.71929 4.85691 5.09954 5.21545 5.36189 5.59545 5.76098 5.79052 5.97650 6.32684 6.41882 6.47878 6.84316 6.91354 7.75094 8.63820 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.006828 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.245892 B = 4099.647477 C = 5458.076469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.223 3.777 3 C 0.215 3.785 4 N -0.748 5.748 5 C 0.266 3.734 6 C -0.201 4.201 7 C -0.029 4.029 8 C -0.191 4.191 9 C -0.040 4.040 10 C -0.223 4.223 11 C 0.443 3.557 12 O -0.587 6.587 13 O -0.235 6.235 14 C -0.421 4.421 15 H 0.081 0.919 16 C -0.003 4.003 17 N -0.899 5.899 18 Si 1.017 2.983 19 H -0.263 1.263 20 H -0.257 1.257 21 H -0.263 1.263 22 H 0.151 0.849 23 H 0.146 0.854 24 H 0.407 0.593 25 H 0.179 0.821 26 H 0.174 0.826 27 H 0.146 0.854 28 H 0.105 0.895 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 -10.535 -12.927 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.095 4.095 3 C 0.090 3.910 4 N -0.389 5.389 5 C 0.158 3.842 6 C -0.223 4.223 7 C -0.047 4.047 8 C -0.210 4.210 9 C -0.059 4.059 10 C -0.229 4.229 11 C 0.296 3.704 12 O -0.488 6.488 13 O -0.142 6.142 14 C -0.496 4.496 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.535 5.535 18 Si 0.835 3.165 19 H -0.187 1.187 20 H -0.181 1.181 21 H -0.188 1.188 22 H 0.168 0.832 23 H 0.163 0.837 24 H 0.253 0.747 25 H 0.196 0.804 26 H 0.191 0.809 27 H 0.163 0.837 28 H 0.123 0.877 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.324 -10.518 -12.942 17.005 hybrid contribution -0.653 0.983 1.288 1.747 sum 2.671 -9.535 -11.654 15.292 Atomic orbital electron populations 1.81245 1.14844 1.10146 1.08789 1.29602 0.95707 0.91798 0.92343 1.19302 0.78217 1.01850 0.91652 1.45586 1.04856 1.59391 1.29064 1.17847 0.84494 0.90589 0.91282 1.21092 0.92416 1.05488 1.03315 1.21589 0.95376 0.93298 0.94469 1.21167 1.00102 1.01691 0.98079 1.21258 0.91251 0.95757 0.97643 1.18784 0.93400 1.08380 1.02380 1.21836 0.87627 0.79832 0.81122 1.90203 1.19402 1.67319 1.71864 1.83945 1.39783 1.48732 1.41772 1.21396 0.88942 1.23856 1.15437 0.90156 1.26518 0.99831 0.96390 0.97619 1.70054 1.16402 1.33792 1.33300 0.84705 0.76530 0.77980 0.77247 1.18745 1.18100 1.18777 0.83215 0.83691 0.74656 0.80370 0.80903 0.83667 0.87652 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.52 18.54 20.01 0.37 -14.15 15 2 C 0.22 5.27 15.55 89.44 1.39 6.66 15 3 C 0.21 3.28 5.42 84.57 0.46 3.74 15 4 N -0.75 -21.39 5.57 -347.81 -1.94 -23.33 15 5 C 0.27 7.92 6.65 38.74 0.26 8.17 15 6 C -0.20 -3.67 9.30 22.37 0.21 -3.47 15 7 C -0.03 -0.50 10.03 22.30 0.22 -0.27 15 8 C -0.19 -4.69 10.02 22.24 0.22 -4.46 15 9 C -0.04 -1.45 9.61 22.53 0.22 -1.23 15 10 C -0.22 -9.05 5.89 -19.99 -0.12 -9.17 15 11 C 0.44 23.54 7.81 70.19 0.55 24.09 15 12 O -0.59 -32.24 12.89 19.64 0.25 -31.99 15 13 O -0.23 -14.37 9.01 10.67 0.10 -14.28 15 14 C -0.42 -26.26 9.65 67.95 0.66 -25.60 15 15 H 0.08 5.07 6.86 -2.91 -0.02 5.05 15 16 C 0.00 -0.17 5.49 84.89 0.47 0.30 15 17 N -0.90 -53.84 13.67 21.63 0.30 -53.55 15 18 Si 1.02 44.50 29.55 68.60 2.03 46.52 15 19 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 20 H -0.26 -10.29 7.11 99.48 0.71 -9.59 15 21 H -0.26 -11.15 7.11 99.48 0.71 -10.44 15 22 H 0.15 1.03 7.72 -2.39 -0.02 1.01 15 23 H 0.15 1.16 8.13 -2.38 -0.02 1.14 15 24 H 0.41 15.45 4.97 -94.57 -0.47 14.98 15 25 H 0.18 1.38 6.72 -2.91 -0.02 1.36 15 26 H 0.17 1.34 8.06 -2.91 -0.02 1.32 15 27 H 0.15 2.81 8.06 -2.91 -0.02 2.78 15 28 H 0.11 4.40 7.62 -2.91 -0.02 4.38 15 29 H 0.28 15.17 8.31 -92.70 -0.77 14.40 15 Total: -1.00 -82.40 272.41 6.37 -76.03 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.73 Total: 15.98 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.53 Total: -1.24 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -1.27 Total: -91.02 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: 0.35 Total: -46.27 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -82.40 6.37 -76.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238624884.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.133 kcal (2) G-P(sol) polarization free energy of solvation -82.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds