Wall clock time and date at job start Mon Mar 30 2020 03:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86799 * 120.00486 * 2 1 4 4 H 1.48502 * 109.47330 * 265.06790 * 3 2 1 5 5 H 1.48503 * 109.47108 * 25.06463 * 3 2 1 6 6 H 1.48490 * 109.47461 * 145.06431 * 3 2 1 7 7 C 1.40028 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00612 * 172.63091 * 7 2 1 9 9 C 1.41377 * 120.00064 * 352.63030 * 7 2 1 10 10 N 1.33683 * 119.80913 * 349.00646 * 9 7 2 11 11 C 1.31579 * 121.48022 * 180.02562 * 10 9 7 12 12 F 1.35102 * 119.52732 * 180.02562 * 11 10 9 13 13 C 1.39170 * 120.94168 * 359.97438 * 11 10 9 14 14 C 1.50709 * 120.23110 * 179.97438 * 13 11 10 15 15 N 1.46894 * 109.47187 * 284.98410 * 14 13 11 16 16 C 1.38790 * 119.53326 * 359.97438 * 13 11 10 17 17 C 1.38262 * 118.62671 * 0.02562 * 16 13 11 18 18 C 1.50701 * 120.48055 * 179.97438 * 17 16 13 19 19 F 1.39901 * 109.46948 * 19.06883 * 18 17 16 20 20 F 1.39895 * 109.47033 * 139.07096 * 18 17 16 21 21 H 0.97009 * 119.99527 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46626 * 44.98545 * 14 13 11 23 23 H 1.08997 * 109.46674 * 164.98165 * 14 13 11 24 24 H 1.00899 * 111.00331 * 180.02562 * 15 14 13 25 25 H 1.00902 * 111.00191 * 303.95316 * 15 14 13 26 26 H 1.08005 * 120.68839 * 180.29352 * 16 13 11 27 27 H 1.09007 * 109.47042 * 259.07161 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.5933 1.9862 -1.3949 5 1 1.3908 2.6805 0.5931 6 1 3.4829 1.4724 0.8017 7 6 2.0075 -1.2127 -0.0005 8 1 3.0808 -1.2166 -0.1205 9 6 1.3094 -2.4321 0.1560 10 7 0.0237 -2.4195 0.5222 11 6 -0.6573 -3.5345 0.6780 12 9 -1.9551 -3.4758 1.0487 13 6 -0.0600 -4.7734 0.4652 14 6 -0.8550 -6.0406 0.6488 15 7 -1.0342 -6.3027 2.0830 16 6 1.2728 -4.8337 0.0828 17 6 1.9707 -3.6507 -0.0754 18 6 3.4198 -3.6676 -0.4889 19 9 3.7255 -4.9044 -1.0668 20 9 3.6512 -2.6483 -1.4188 21 1 -0.4850 0.8402 0.0004 22 1 -1.8303 -5.9294 0.1750 23 1 -0.3215 -6.8736 0.1911 24 1 -1.5644 -7.1480 2.2327 25 1 -0.1444 -6.3457 2.5568 26 1 1.7536 -5.7850 -0.0918 27 1 4.0494 -3.5102 0.3869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238638155.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:11 Heat of formation + Delta-G solvation = -138.330799 kcal Electronic energy + Delta-G solvation = -17905.076151 eV Core-core repulsion = 14439.874879 eV Total energy + Delta-G solvation = -3465.201271 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.71093 -49.57155 -47.73076 -40.24090 -36.38168 -35.08092 -33.17865 -31.81678 -28.64718 -26.55838 -25.09792 -23.60966 -21.88023 -19.88063 -18.70132 -18.12595 -17.81542 -17.62071 -17.11934 -16.76733 -16.55897 -16.09566 -15.11903 -14.75760 -14.59840 -14.45020 -14.30155 -14.25054 -13.99324 -13.67958 -13.40471 -12.91878 -12.83098 -12.78092 -12.37507 -12.00934 -11.58135 -11.21730 -10.34698 -9.92198 -9.54613 -9.45473 -8.56007 -6.70661 0.49037 0.82535 1.40041 1.49833 1.55529 2.17269 2.60605 3.12125 3.26527 3.52700 3.64834 3.94146 4.00972 4.22523 4.30127 4.34446 4.49225 4.68727 4.85988 5.06869 5.31313 5.40599 5.50012 5.90550 6.09216 6.31704 6.51882 6.67836 6.75297 7.72419 8.25555 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.020679 B = 0.010271 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.711581 B = 2725.365081 C = 3940.942412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.023 3.977 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.246 1.246 7 C -0.435 4.435 8 H 0.116 0.884 9 C 0.270 3.730 10 N -0.558 5.558 11 C 0.336 3.664 12 F -0.138 7.138 13 C -0.308 4.308 14 C 0.141 3.859 15 N -0.855 5.855 16 C 0.015 3.985 17 C -0.359 4.359 18 C 0.343 3.657 19 F -0.214 7.214 20 F -0.210 7.210 21 H 0.286 0.714 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.350 0.650 25 H 0.343 0.657 26 H 0.146 0.854 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.827 -5.972 1.083 7.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.201 4.201 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.169 1.169 7 C -0.464 4.464 8 H 0.134 0.866 9 C 0.147 3.853 10 N -0.276 5.276 11 C 0.172 3.828 12 F -0.118 7.118 13 C -0.315 4.315 14 C 0.010 3.990 15 N -0.387 5.387 16 C -0.009 4.009 17 C -0.365 4.365 18 C 0.289 3.711 19 F -0.195 7.195 20 F -0.191 7.191 21 H 0.097 0.903 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.164 0.836 25 H 0.156 0.844 26 H 0.164 0.836 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.814 -4.348 1.184 5.904 hybrid contribution 0.447 -0.821 -0.422 1.025 sum 4.261 -5.168 0.761 6.742 Atomic orbital electron populations 1.70131 1.09549 1.30320 1.27183 1.27186 0.95567 1.05378 0.91958 0.85094 0.79144 0.74883 0.79999 1.18386 1.19443 1.16891 1.20476 0.96714 0.89817 1.39408 0.86598 1.18212 0.86104 0.92811 0.88167 1.67962 1.10047 1.27695 1.21939 1.18760 0.79287 0.91212 0.93526 1.91447 1.34370 1.97288 1.88688 1.19969 0.96658 0.93852 1.20986 1.20087 0.97636 0.92082 0.89196 1.58641 1.24813 1.44287 1.10945 1.20769 0.91740 0.97332 0.91100 1.21159 0.98086 0.95454 1.21777 1.19971 0.93941 0.70183 0.87025 1.92883 1.94272 1.45007 1.87340 1.92916 1.95594 1.60596 1.69989 0.90320 0.92125 0.93263 0.83587 0.84410 0.83598 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.24 11.63 21.84 0.25 -39.98 15 2 C 0.02 1.12 5.46 85.29 0.47 1.59 15 3 Si 0.99 36.39 29.57 68.60 2.03 38.42 15 4 H -0.26 -9.24 7.11 99.48 0.71 -8.54 15 5 H -0.27 -9.62 7.11 99.48 0.71 -8.92 15 6 H -0.25 -8.47 7.11 99.48 0.71 -7.76 15 7 C -0.43 -22.01 8.03 23.48 0.19 -21.82 15 8 H 0.12 5.33 5.72 -2.91 -0.02 5.31 15 9 C 0.27 14.21 6.48 40.20 0.26 14.47 15 10 N -0.56 -31.39 8.06 -190.13 -1.53 -32.92 15 11 C 0.34 17.12 8.37 84.95 0.71 17.83 15 12 F -0.14 -7.00 16.78 44.97 0.75 -6.24 15 13 C -0.31 -13.01 5.44 -19.51 -0.11 -13.12 15 14 C 0.14 4.64 6.61 85.56 0.57 5.21 15 15 N -0.86 -25.23 9.61 -190.01 -1.83 -27.05 15 16 C 0.01 0.59 9.14 22.41 0.20 0.80 15 17 C -0.36 -16.00 5.78 -19.29 -0.11 -16.12 15 18 C 0.34 12.73 5.13 71.24 0.37 13.09 15 19 F -0.21 -7.43 16.27 44.97 0.73 -6.70 15 20 F -0.21 -8.65 14.57 44.97 0.66 -7.99 15 21 H 0.29 13.87 8.29 -92.70 -0.77 13.10 15 22 H 0.06 2.07 8.08 -2.39 -0.02 2.05 15 23 H 0.05 1.36 7.99 -2.39 -0.02 1.34 15 24 H 0.35 7.93 9.08 -89.69 -0.81 7.11 15 25 H 0.34 9.51 8.99 -89.69 -0.81 8.71 15 26 H 0.15 4.82 7.42 -2.91 -0.02 4.80 15 27 H 0.14 4.07 8.14 -2.38 -0.02 4.05 15 Total: -1.00 -62.52 251.94 3.24 -59.28 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.36 Total: 21.27 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 2.54 Total: 1.93 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -3.10 Total: -99.96 kcal Atomic # 9 Polarization: -23.07 SS G_CDS: 2.14 Total: -20.93 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -62.52 3.24 -59.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238638155.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.055 kcal (2) G-P(sol) polarization free energy of solvation -62.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds