Wall clock time and date at job start Mon Mar 30 2020 03:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86795 * 119.99704 * 2 1 4 4 H 1.48501 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47354 * 300.00385 * 3 2 1 6 6 H 1.48499 * 109.47369 * 60.00438 * 3 2 1 7 7 C 1.40038 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00209 * 179.97438 * 7 2 1 9 9 C 1.41237 * 120.00191 * 359.97438 * 7 2 1 10 10 N 1.33667 * 119.85936 * 359.97438 * 9 7 2 11 11 C 1.31367 * 121.53971 * 179.97438 * 10 9 7 12 12 C 1.50706 * 119.44828 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.46923 * 274.99761 * 12 11 10 14 14 C 1.38863 * 121.09582 * 0.26144 * 11 10 9 15 15 C 1.38784 * 119.60148 * 359.48417 * 14 11 10 16 16 C 1.50690 * 120.71716 * 180.24803 * 15 14 11 17 17 F 1.39905 * 109.47349 * 210.25765 * 16 15 14 18 18 F 1.39901 * 109.47405 * 330.25865 * 16 15 14 19 19 C 1.38547 * 118.56403 * 0.50465 * 15 14 11 20 20 F 1.35105 * 120.54288 * 179.76731 * 19 15 14 21 21 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47292 * 35.00622 * 12 11 10 23 23 H 1.09001 * 109.46828 * 155.00219 * 12 11 10 24 24 H 1.00903 * 110.99883 * 56.05711 * 13 12 11 25 25 H 1.00904 * 110.99266 * 180.02562 * 13 12 11 26 26 H 1.08000 * 120.19759 * 179.72232 * 14 11 10 27 27 H 1.09003 * 109.47028 * 90.25816 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7015 1.3465 -0.0006 5 1 1.8826 2.3965 -1.2124 6 1 1.8828 2.3964 1.2125 7 6 2.0077 -1.2128 -0.0005 8 1 3.0878 -1.2128 -0.0010 9 6 1.3016 -2.4359 -0.0005 10 7 -0.0351 -2.4327 0.0005 11 6 -0.7250 -3.5506 0.0000 12 6 -2.2309 -3.4920 0.0018 13 7 -2.7138 -3.3539 1.3823 14 6 -0.0897 -4.7854 0.0039 15 6 1.2969 -4.8430 -0.0026 16 6 2.0123 -6.1693 -0.0043 17 9 3.2396 -6.0381 0.6544 18 9 1.2288 -7.1226 0.6550 19 6 2.0093 -3.6547 -0.0021 20 9 3.3603 -3.6641 -0.0035 21 1 -0.4850 0.8400 0.0004 22 1 -2.5619 -2.6361 -0.5863 23 1 -2.6306 -4.4081 -0.4330 24 1 -2.3062 -2.5462 1.8289 25 1 -3.7217 -3.3128 1.4103 26 1 -0.6712 -5.6955 0.0079 27 1 2.1840 -6.4882 -1.0324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238639766.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:34 Heat of formation + Delta-G solvation = -122.031359 kcal Electronic energy + Delta-G solvation = -17838.365340 eV Core-core repulsion = 14373.870865 eV Total energy + Delta-G solvation = -3464.494475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.48831 -47.44632 -46.40645 -38.50533 -34.44291 -33.63151 -31.55812 -29.72346 -26.43728 -25.60299 -24.16101 -21.49187 -20.17993 -17.83512 -16.96230 -16.90557 -16.41116 -15.68028 -15.52373 -15.04379 -14.86889 -14.35320 -13.96233 -13.37216 -13.27948 -12.86985 -12.74473 -12.55541 -12.11949 -11.84395 -11.76103 -11.57214 -11.25929 -11.13274 -10.74835 -10.51914 -10.08298 -9.60501 -8.50641 -8.23533 -7.95230 -7.66176 -6.69632 -4.75467 2.28404 2.41240 2.98628 3.00253 3.04361 3.78870 4.28614 4.40620 4.75509 5.15552 5.19621 5.34500 5.48692 5.60311 5.74747 5.91464 6.16931 6.30142 6.56605 6.88086 7.01620 7.05902 7.23458 7.54911 7.61790 7.94227 8.00459 8.35105 8.58343 9.70853 10.02689 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.009602 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.013672 B = 2915.295578 C = 4126.603251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.067 3.933 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.411 4.411 8 H 0.093 0.907 9 C 0.235 3.765 10 N -0.453 5.453 11 C 0.148 3.852 12 C 0.124 3.876 13 N -0.844 5.844 14 C -0.251 4.251 15 C -0.137 4.137 16 C 0.318 3.682 17 F -0.200 7.200 18 F -0.204 7.204 19 C -0.041 4.041 20 F -0.147 7.147 21 H 0.276 0.724 22 H 0.040 0.960 23 H 0.071 0.929 24 H 0.349 0.651 25 H 0.332 0.668 26 H 0.112 0.888 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -3.205 -1.485 3.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.159 4.159 3 Si 0.738 3.262 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.442 4.442 8 H 0.111 0.889 9 C 0.109 3.891 10 N -0.167 5.167 11 C 0.002 3.998 12 C -0.006 4.006 13 N -0.374 5.374 14 C -0.274 4.274 15 C -0.144 4.144 16 C 0.265 3.735 17 F -0.181 7.181 18 F -0.185 7.185 19 C -0.066 4.066 20 F -0.126 7.126 21 H 0.087 0.913 22 H 0.058 0.942 23 H 0.089 0.911 24 H 0.162 0.838 25 H 0.143 0.857 26 H 0.130 0.870 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.019 -2.970 -1.340 3.833 hybrid contribution 0.646 0.659 -0.215 0.948 sum -1.373 -2.312 -1.555 3.106 Atomic orbital electron populations 1.70110 1.07348 1.28280 1.27058 1.26089 0.95017 1.01406 0.93409 0.86135 0.81009 0.80293 0.78764 1.18061 1.19578 1.19537 1.19718 0.94990 0.89038 1.40405 0.88863 1.18605 0.88300 0.90565 0.91635 1.68616 1.05709 1.25941 1.16427 1.20947 0.95192 0.89005 0.94698 1.20411 0.90559 1.00007 0.89670 1.58731 1.11163 1.49821 1.17642 1.20696 0.91534 0.98416 1.16784 1.20267 0.95471 0.91893 1.06808 1.20174 0.75261 0.86006 0.92084 1.92994 1.44792 1.96384 1.83910 1.92946 1.75321 1.66202 1.84060 1.18458 0.76863 0.94385 1.16854 1.91327 1.29096 1.97295 1.94847 0.91276 0.94222 0.91112 0.83822 0.85652 0.86957 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.44 11.46 55.55 0.64 -16.81 15 2 C 0.07 1.62 5.50 -17.34 -0.10 1.53 15 3 Si 0.91 17.80 29.56 -169.99 -5.02 12.77 15 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 6 H -0.27 -5.17 7.11 56.52 0.40 -4.76 15 7 C -0.41 -10.73 8.99 -37.77 -0.34 -11.07 15 8 H 0.09 2.36 7.42 -52.48 -0.39 1.97 15 9 C 0.23 6.27 6.56 -84.91 -0.56 5.71 15 10 N -0.45 -11.67 7.77 -7.31 -0.06 -11.73 15 11 C 0.15 3.38 6.30 -82.56 -0.52 2.86 15 12 C 0.12 2.32 7.09 -4.97 -0.04 2.28 15 13 N -0.84 -14.44 9.61 -11.40 -0.11 -14.55 15 14 C -0.25 -5.51 9.11 -39.15 -0.36 -5.86 15 15 C -0.14 -3.09 5.76 -104.31 -0.60 -3.69 15 16 C 0.32 6.04 5.63 36.00 0.20 6.25 15 17 F -0.20 -4.10 15.61 2.25 0.04 -4.06 15 18 F -0.20 -3.84 16.56 2.25 0.04 -3.80 15 19 C -0.04 -1.03 7.18 -38.45 -0.28 -1.30 15 20 F -0.15 -3.62 14.88 2.25 0.03 -3.59 15 21 H 0.28 6.10 8.29 -40.82 -0.34 5.77 15 22 H 0.04 0.75 8.14 -51.93 -0.42 0.32 15 23 H 0.07 1.16 8.04 -51.93 -0.42 0.74 15 24 H 0.35 6.45 8.99 -39.29 -0.35 6.09 15 25 H 0.33 4.51 9.08 -39.29 -0.36 4.16 15 26 H 0.11 2.23 7.67 -52.49 -0.40 1.83 15 27 H 0.11 1.70 8.14 -51.93 -0.42 1.27 15 LS Contribution 254.65 15.07 3.84 3.84 Total: -1.00 -28.09 254.65 -5.09 -33.18 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -1.90 Total: 8.05 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.58 Total: -3.30 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.47 Total: -43.09 kcal Atomic # 9 Polarization: -11.56 SS G_CDS: 0.11 Total: -11.45 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.02 Total: 12.77 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.09 -5.09 -33.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238639766.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.849 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds