Wall clock time and date at job start Mon Mar 30 2020 03:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86793 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47268 * 270.00064 * 3 2 1 5 5 H 1.48506 * 109.47264 * 29.99864 * 3 2 1 6 6 H 1.48495 * 109.47388 * 149.99773 * 3 2 1 7 7 C 1.40040 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99544 * 180.02562 * 7 2 1 9 9 C 1.41361 * 120.00528 * 0.02562 * 7 2 1 10 10 N 1.33690 * 119.80907 * 359.97438 * 9 7 2 11 11 C 1.31580 * 121.47840 * 180.02562 * 10 9 7 12 12 F 1.35095 * 119.52346 * 179.97438 * 11 10 9 13 13 C 1.39166 * 120.94573 * 0.02562 * 11 10 9 14 14 C 1.50702 * 120.23786 * 180.02562 * 13 11 10 15 15 F 1.39901 * 109.46806 * 29.97175 * 14 13 11 16 16 F 1.39890 * 109.47438 * 149.97390 * 14 13 11 17 17 C 1.38805 * 119.53069 * 359.97347 * 13 11 10 18 18 C 1.38254 * 118.62649 * 0.02562 * 17 13 11 19 19 C 1.50699 * 120.48267 * 179.97438 * 18 17 13 20 20 N 1.46893 * 109.47209 * 259.99821 * 19 18 17 21 21 H 0.96995 * 120.00483 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.46627 * 269.97923 * 14 13 11 23 23 H 1.08005 * 120.68467 * 179.72251 * 17 13 11 24 24 H 1.09005 * 109.46715 * 19.99972 * 19 18 17 25 25 H 1.09005 * 109.47312 * 139.99647 * 19 18 17 26 26 H 1.00901 * 111.00048 * 56.04661 * 20 19 18 27 27 H 1.00900 * 111.00240 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4000 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0075 -1.2128 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4371 0.0005 10 7 -0.0361 -2.4327 0.0005 11 6 -0.7269 -3.5526 0.0010 12 9 -2.0769 -3.5020 0.0015 13 6 -0.0867 -4.7882 0.0021 14 6 -0.8937 -6.0610 0.0021 15 9 -2.1079 -5.8433 -0.6579 16 9 -0.1785 -7.0666 -0.6568 17 6 1.3003 -4.8402 0.0021 18 6 2.0076 -3.6522 0.0016 19 6 3.5146 -3.6598 0.0021 20 7 4.0050 -3.4208 1.3660 21 1 -0.4850 0.8400 0.0004 22 1 -1.0887 -6.3675 1.0298 23 1 1.8164 -5.7889 0.0075 24 1 3.8732 -4.6276 -0.3486 25 1 3.8822 -2.8749 -0.6589 26 1 3.6258 -4.0983 2.0105 27 1 5.0136 -3.4216 1.3930 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238640221.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:21 Heat of formation + Delta-G solvation = -118.257614 kcal Electronic energy + Delta-G solvation = -17856.487847 eV Core-core repulsion = 14392.157014 eV Total energy + Delta-G solvation = -3464.330833 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.33865 -47.65986 -46.24220 -38.51164 -34.20182 -33.96741 -31.35957 -29.80543 -27.29216 -24.36237 -23.83195 -21.81957 -20.08693 -18.00310 -16.87412 -16.78241 -16.38623 -16.03347 -15.40000 -14.98149 -14.70350 -14.47640 -13.72851 -13.23855 -13.13909 -12.84061 -12.72861 -12.54097 -12.23130 -11.86416 -11.67162 -11.42601 -11.17740 -11.13632 -10.77226 -10.37962 -9.96353 -9.54781 -8.50943 -8.17522 -7.90675 -7.69149 -6.69431 -4.83639 2.31218 2.63855 2.98618 2.99706 3.04430 3.77878 4.38647 4.54157 5.03822 5.12623 5.21777 5.45454 5.56056 5.74099 5.86247 5.90059 6.13733 6.44003 6.45650 6.88219 7.10875 7.17681 7.28058 7.71287 7.76415 7.97727 8.01569 8.34317 8.61282 9.62647 10.00345 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.008633 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.648133 B = 3242.688136 C = 4186.504461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.057 3.943 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.376 4.376 8 H 0.103 0.897 9 C 0.287 3.713 10 N -0.514 5.514 11 C 0.366 3.634 12 F -0.132 7.132 13 C -0.410 4.410 14 C 0.338 3.662 15 F -0.209 7.209 16 F -0.216 7.216 17 C 0.002 3.998 18 C -0.253 4.253 19 C 0.136 3.864 20 N -0.839 5.839 21 H 0.280 0.720 22 H 0.098 0.902 23 H 0.109 0.891 24 H 0.011 0.989 25 H 0.074 0.926 26 H 0.334 0.666 27 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 -4.414 1.453 6.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.171 4.171 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.405 4.405 8 H 0.121 0.879 9 C 0.165 3.835 10 N -0.232 5.232 11 C 0.200 3.800 12 F -0.112 7.112 13 C -0.418 4.418 14 C 0.284 3.716 15 F -0.190 7.190 16 F -0.197 7.197 17 C -0.022 4.022 18 C -0.258 4.258 19 C 0.006 3.994 20 N -0.367 5.367 21 H 0.092 0.908 22 H 0.115 0.885 23 H 0.127 0.873 24 H 0.030 0.970 25 H 0.092 0.908 26 H 0.146 0.854 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.943 -2.735 1.351 4.238 hybrid contribution 0.740 -1.136 -0.174 1.367 sum 3.682 -3.871 1.177 5.471 Atomic orbital electron populations 1.70131 1.07542 1.28872 1.24700 1.26337 0.95047 1.02005 0.93760 0.86165 0.80617 0.79851 0.79459 1.19167 1.19878 1.17957 1.20007 0.95278 0.88665 1.36525 0.87882 1.18029 0.85633 0.92005 0.87808 1.68259 1.08693 1.24503 1.21729 1.18165 0.77910 0.89893 0.94032 1.91503 1.29135 1.97242 1.93303 1.20106 0.95352 0.92297 1.34080 1.19910 0.76145 0.84653 0.90872 1.92957 1.46718 1.95311 1.84001 1.92897 1.79178 1.63372 1.84286 1.20292 0.91383 0.96974 0.93543 1.20268 0.94689 0.93399 1.17453 1.20193 0.91810 0.97653 0.89757 1.58696 1.11561 1.58278 1.08179 0.90845 0.88498 0.87293 0.97048 0.90794 0.85420 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.82 11.46 55.55 0.64 -17.19 15 2 C 0.06 1.36 5.50 -17.34 -0.10 1.27 15 3 Si 0.92 17.52 29.56 -169.99 -5.02 12.50 15 4 H -0.27 -5.03 7.11 56.52 0.40 -4.62 15 5 H -0.27 -5.18 7.11 56.52 0.40 -4.77 15 6 H -0.26 -4.81 7.11 56.52 0.40 -4.40 15 7 C -0.38 -9.29 8.68 -37.72 -0.33 -9.62 15 8 H 0.10 2.37 6.25 -52.49 -0.33 2.04 15 9 C 0.29 7.39 6.55 -84.99 -0.56 6.84 15 10 N -0.51 -14.10 7.88 -11.45 -0.09 -14.19 15 11 C 0.37 9.32 8.26 -17.31 -0.14 9.18 15 12 F -0.13 -3.30 15.45 2.25 0.03 -3.26 15 13 C -0.41 -9.20 5.78 -104.07 -0.60 -9.80 15 14 C 0.34 6.50 5.60 36.01 0.20 6.70 15 15 F -0.21 -4.32 15.51 2.25 0.03 -4.29 15 16 F -0.22 -4.06 16.54 2.25 0.04 -4.03 15 17 C 0.00 0.04 9.14 -39.37 -0.36 -0.32 15 18 C -0.25 -5.63 5.47 -103.73 -0.57 -6.20 15 19 C 0.14 2.48 6.13 -4.98 -0.03 2.45 15 20 N -0.84 -13.78 9.61 -11.41 -0.11 -13.88 15 21 H 0.28 6.50 8.29 -40.82 -0.34 6.16 15 22 H 0.10 1.55 8.14 -51.93 -0.42 1.12 15 23 H 0.11 2.01 7.68 -52.48 -0.40 1.61 15 24 H 0.01 0.19 8.03 -51.93 -0.42 -0.23 15 25 H 0.07 1.38 6.91 -51.93 -0.36 1.02 15 26 H 0.33 5.21 8.99 -39.29 -0.35 4.86 15 27 H 0.33 4.33 9.08 -39.29 -0.36 3.97 15 LS Contribution 251.81 15.07 3.79 3.79 Total: -1.00 -28.37 251.81 -4.94 -33.30 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -1.77 Total: 6.75 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -2.48 Total: 0.49 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.44 Total: -45.26 kcal Atomic # 9 Polarization: -11.68 SS G_CDS: 0.11 Total: -11.58 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.02 Total: 12.50 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.37 -4.94 -33.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238640221.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.953 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds