Wall clock time and date at job start Mon Mar 30 2020 03:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86793 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47268 * 270.00064 * 3 2 1 5 5 H 1.48506 * 109.47264 * 29.99864 * 3 2 1 6 6 H 1.48495 * 109.47388 * 149.99773 * 3 2 1 7 7 C 1.40040 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99544 * 180.02562 * 7 2 1 9 9 C 1.41361 * 120.00528 * 0.02562 * 7 2 1 10 10 N 1.33690 * 119.80907 * 359.97438 * 9 7 2 11 11 C 1.31580 * 121.47840 * 180.02562 * 10 9 7 12 12 F 1.35095 * 119.52346 * 179.97438 * 11 10 9 13 13 C 1.39166 * 120.94573 * 0.02562 * 11 10 9 14 14 C 1.50702 * 120.23786 * 180.02562 * 13 11 10 15 15 F 1.39901 * 109.46806 * 29.97175 * 14 13 11 16 16 F 1.39890 * 109.47438 * 149.97390 * 14 13 11 17 17 C 1.38805 * 119.53069 * 359.97347 * 13 11 10 18 18 C 1.38254 * 118.62649 * 0.02562 * 17 13 11 19 19 C 1.50699 * 120.48267 * 179.97438 * 18 17 13 20 20 N 1.46893 * 109.47209 * 259.99821 * 19 18 17 21 21 H 0.96995 * 120.00483 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.46627 * 269.97923 * 14 13 11 23 23 H 1.08005 * 120.68467 * 179.72251 * 17 13 11 24 24 H 1.09005 * 109.46715 * 19.99972 * 19 18 17 25 25 H 1.09005 * 109.47312 * 139.99647 * 19 18 17 26 26 H 1.00901 * 111.00048 * 56.04661 * 20 19 18 27 27 H 1.00900 * 111.00240 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4000 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0075 -1.2128 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4371 0.0005 10 7 -0.0361 -2.4327 0.0005 11 6 -0.7269 -3.5526 0.0010 12 9 -2.0769 -3.5020 0.0015 13 6 -0.0867 -4.7882 0.0021 14 6 -0.8937 -6.0610 0.0021 15 9 -2.1079 -5.8433 -0.6579 16 9 -0.1785 -7.0666 -0.6568 17 6 1.3003 -4.8402 0.0021 18 6 2.0076 -3.6522 0.0016 19 6 3.5146 -3.6598 0.0021 20 7 4.0050 -3.4208 1.3660 21 1 -0.4850 0.8400 0.0004 22 1 -1.0887 -6.3675 1.0298 23 1 1.8164 -5.7889 0.0075 24 1 3.8732 -4.6276 -0.3486 25 1 3.8822 -2.8749 -0.6589 26 1 3.6258 -4.0983 2.0105 27 1 5.0136 -3.4216 1.3930 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238640221.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:21 Heat of formation + Delta-G solvation = -137.745911 kcal Electronic energy + Delta-G solvation = -17857.332923 eV Core-core repulsion = 14392.157014 eV Total energy + Delta-G solvation = -3465.175909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.97721 -49.48350 -47.80504 -40.29875 -35.75937 -35.69031 -33.14686 -31.46695 -29.02730 -25.92340 -25.53966 -23.60284 -21.75510 -19.81319 -18.64021 -18.31319 -18.03092 -17.65949 -16.93484 -16.73081 -16.55543 -16.07223 -15.17684 -14.95770 -14.72246 -14.44360 -14.29359 -14.13643 -13.86616 -13.61699 -13.33878 -13.04651 -12.81948 -12.75668 -12.42539 -11.93635 -11.60665 -11.25973 -10.31152 -9.88989 -9.53088 -9.30793 -8.46502 -6.67960 0.49070 0.88037 1.41706 1.49885 1.58078 2.18586 2.61352 3.04174 3.22249 3.51502 3.58586 3.83980 4.13986 4.20280 4.23924 4.42616 4.56294 4.75141 4.91922 5.14452 5.37353 5.40945 5.60001 5.95562 6.14383 6.44393 6.55746 6.76993 6.87814 7.78128 8.27184 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.008633 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.648133 B = 3242.688136 C = 4186.504461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.013 3.987 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.246 1.246 7 C -0.401 4.401 8 H 0.115 0.885 9 C 0.256 3.744 10 N -0.556 5.556 11 C 0.332 3.668 12 F -0.140 7.140 13 C -0.405 4.405 14 C 0.340 3.660 15 F -0.219 7.219 16 F -0.211 7.211 17 C -0.001 4.001 18 C -0.252 4.252 19 C 0.142 3.858 20 N -0.847 5.847 21 H 0.284 0.716 22 H 0.140 0.860 23 H 0.144 0.856 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.340 0.660 27 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.756 -5.220 1.795 7.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.210 4.210 3 Si 0.813 3.187 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.430 4.430 8 H 0.133 0.867 9 C 0.134 3.866 10 N -0.275 5.275 11 C 0.169 3.831 12 F -0.119 7.119 13 C -0.413 4.413 14 C 0.286 3.714 15 F -0.201 7.201 16 F -0.192 7.192 17 C -0.025 4.025 18 C -0.257 4.257 19 C 0.012 3.988 20 N -0.378 5.378 21 H 0.095 0.905 22 H 0.157 0.843 23 H 0.161 0.839 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.152 0.848 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.761 -3.577 1.695 6.192 hybrid contribution 0.181 -1.007 -0.283 1.062 sum 4.943 -4.584 1.412 6.887 Atomic orbital electron populations 1.70249 1.09465 1.29978 1.26651 1.27318 0.95655 1.05585 0.92484 0.85022 0.79223 0.74861 0.79625 1.18530 1.19681 1.16946 1.20343 0.95884 0.89154 1.37620 0.86728 1.18566 0.85522 0.93944 0.88557 1.68134 1.10060 1.26117 1.23144 1.18535 0.77921 0.90954 0.95737 1.91472 1.29556 1.97329 1.93553 1.20496 0.96370 0.92619 1.31822 1.20143 0.75187 0.83395 0.92665 1.92939 1.47304 1.95374 1.84447 1.92905 1.79055 1.62775 1.84461 1.20662 0.90958 0.98106 0.92752 1.20706 0.96972 0.92591 1.15446 1.20107 0.89098 0.98879 0.90751 1.58546 1.13265 1.58746 1.07271 0.90542 0.84262 0.83855 0.94398 0.91412 0.84770 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.46 11.46 21.84 0.25 -39.21 15 2 C 0.01 0.65 5.50 85.29 0.47 1.11 15 3 Si 0.99 35.90 29.56 68.60 2.03 37.93 15 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 5 H -0.27 -9.62 7.11 99.48 0.71 -8.92 15 6 H -0.25 -8.41 7.11 99.48 0.71 -7.71 15 7 C -0.40 -19.95 8.68 23.48 0.20 -19.74 15 8 H 0.11 5.21 6.25 -2.91 -0.02 5.20 15 9 C 0.26 13.33 6.55 40.20 0.26 13.59 15 10 N -0.56 -31.33 7.88 -190.14 -1.50 -32.82 15 11 C 0.33 17.19 8.26 84.95 0.70 17.89 15 12 F -0.14 -7.13 15.45 44.97 0.69 -6.44 15 13 C -0.40 -17.67 5.78 -19.50 -0.11 -17.78 15 14 C 0.34 12.25 5.60 71.24 0.40 12.65 15 15 F -0.22 -8.82 15.51 44.97 0.70 -8.13 15 16 F -0.21 -7.28 16.54 44.97 0.74 -6.53 15 17 C 0.00 -0.05 9.14 22.41 0.20 0.15 15 18 C -0.25 -10.91 5.47 -19.29 -0.11 -11.02 15 19 C 0.14 4.84 6.13 85.56 0.52 5.36 15 20 N -0.85 -25.65 9.61 -190.01 -1.83 -27.48 15 21 H 0.28 13.66 8.29 -92.71 -0.77 12.89 15 22 H 0.14 3.95 8.14 -2.39 -0.02 3.93 15 23 H 0.14 4.73 7.68 -2.91 -0.02 4.71 15 24 H 0.04 1.10 8.03 -2.38 -0.02 1.08 15 25 H 0.07 2.39 6.91 -2.38 -0.02 2.38 15 26 H 0.34 9.69 8.99 -89.69 -0.81 8.89 15 27 H 0.35 8.13 9.08 -89.69 -0.81 7.32 15 Total: -1.00 -62.34 251.81 3.27 -59.06 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.36 Total: 21.40 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 2.55 Total: 2.22 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -3.07 Total: -99.51 kcal Atomic # 9 Polarization: -23.23 SS G_CDS: 2.14 Total: -21.10 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -62.34 3.27 -59.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238640221.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.684 kcal (2) G-P(sol) polarization free energy of solvation -62.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds