Wall clock time and date at job start Mon Mar 30 2020 03:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86799 * 119.99879 * 2 1 4 4 H 1.48506 * 109.47188 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47008 * 299.99460 * 3 2 1 6 6 H 1.48496 * 109.47321 * 59.99938 * 3 2 1 7 7 C 1.39960 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99805 * 199.70650 * 7 2 1 9 9 C 1.41278 * 119.99904 * 19.70645 * 7 2 1 10 10 C 1.41123 * 120.67594 * 36.34474 * 9 7 2 11 11 F 1.35098 * 119.83869 * 0.02562 * 10 9 7 12 12 N 1.31716 * 120.32077 * 179.97438 * 10 9 7 13 13 C 1.32084 * 121.94008 * 359.97438 * 12 10 9 14 14 C 1.50704 * 119.31498 * 179.97438 * 13 12 10 15 15 F 1.39895 * 109.46953 * 30.02690 * 14 13 12 16 16 F 1.39900 * 109.46770 * 150.02397 * 14 13 12 17 17 C 1.38571 * 121.37099 * 0.03015 * 13 12 10 18 18 C 1.38060 * 119.49235 * 0.22246 * 17 13 12 19 19 C 1.50706 * 120.88285 * 179.75256 * 18 17 13 20 20 N 1.46900 * 109.47076 * 260.00060 * 19 18 17 21 21 H 0.96994 * 120.00222 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47278 * 270.02753 * 14 13 12 23 23 H 1.08001 * 120.25477 * 179.97438 * 17 13 12 24 24 H 1.08994 * 109.47503 * 20.00221 * 19 18 17 25 25 H 1.08999 * 109.46740 * 140.00471 * 19 18 17 26 26 H 1.00905 * 111.00183 * 180.02562 * 20 19 18 27 27 H 1.00904 * 110.99945 * 303.95811 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3464 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8836 2.3965 1.2124 7 6 2.0082 -1.2121 0.0005 8 1 3.0408 -1.2392 0.3160 9 6 1.3639 -2.3999 -0.4115 10 6 0.4237 -2.3813 -1.4638 11 9 0.1346 -1.2176 -2.0863 12 7 -0.1725 -3.4930 -1.8426 13 6 0.0799 -4.6533 -1.2642 14 6 -0.6369 -5.8888 -1.7448 15 9 -0.9303 -5.7577 -3.1063 16 9 0.1799 -7.0076 -1.5493 17 6 0.9894 -4.7581 -0.2239 18 6 1.6439 -3.6277 0.2231 19 6 2.6350 -3.7048 1.3558 20 7 1.9908 -3.2650 2.6007 21 1 -0.4850 0.8400 -0.0004 22 1 -1.5633 -6.0127 -1.1838 23 1 1.1817 -5.7160 0.2363 24 1 2.9791 -4.7328 1.4683 25 1 3.4855 -3.0585 1.1390 26 1 2.6354 -3.3072 3.3759 27 1 1.6061 -2.3376 2.5007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238646094.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:27 Heat of formation + Delta-G solvation = -121.735307 kcal Electronic energy + Delta-G solvation = -17910.100034 eV Core-core repulsion = 14445.618397 eV Total energy + Delta-G solvation = -3464.481637 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.31975 -47.19327 -46.33383 -38.67504 -34.83911 -33.79152 -30.77465 -30.35288 -27.42655 -24.47467 -24.18019 -21.73611 -20.13476 -17.91728 -16.88495 -16.77906 -16.67778 -15.74259 -15.29470 -15.15078 -14.63632 -14.32742 -13.98752 -13.75101 -13.20557 -12.75438 -12.54533 -12.50773 -12.15029 -12.00315 -11.56598 -11.47320 -11.45842 -11.03472 -10.96361 -10.59124 -10.35695 -9.46159 -8.65730 -8.40220 -8.00430 -7.60642 -7.14822 -4.81495 2.19738 2.43353 2.90094 2.95655 2.98200 3.70860 4.26053 4.32163 4.75702 4.91444 5.20159 5.47850 5.56512 5.68642 5.82470 6.03518 6.17382 6.22546 6.48456 6.77647 6.97668 7.13934 7.23960 7.68363 7.74598 7.90485 8.10046 8.32973 8.40875 9.00689 9.83312 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027924 B = 0.008672 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.487791 B = 3228.020507 C = 4019.945207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.447 4.447 8 H 0.092 0.908 9 C 0.073 3.927 10 C 0.241 3.759 11 F -0.115 7.115 12 N -0.475 5.475 13 C -0.070 4.070 14 C 0.343 3.657 15 F -0.201 7.201 16 F -0.209 7.209 17 C -0.094 4.094 18 C -0.145 4.145 19 C 0.132 3.868 20 N -0.845 5.845 21 H 0.291 0.709 22 H 0.109 0.891 23 H 0.116 0.884 24 H 0.061 0.939 25 H 0.031 0.969 26 H 0.327 0.673 27 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -2.996 2.664 4.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.475 4.475 8 H 0.110 0.890 9 C 0.066 3.934 10 C 0.079 3.921 11 F -0.095 7.095 12 N -0.189 5.189 13 C -0.204 4.204 14 C 0.289 3.711 15 F -0.183 7.183 16 F -0.191 7.191 17 C -0.115 4.115 18 C -0.152 4.152 19 C 0.002 3.998 20 N -0.375 5.375 21 H 0.102 0.898 22 H 0.126 0.874 23 H 0.134 0.866 24 H 0.080 0.920 25 H 0.049 0.951 26 H 0.138 0.862 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.094 -3.464 1.853 4.078 hybrid contribution 1.421 1.710 0.393 2.258 sum 2.514 -1.754 2.247 3.801 Atomic orbital electron populations 1.69744 1.07934 1.30814 1.29385 1.25928 0.94762 1.01695 0.92456 0.86135 0.80796 0.80303 0.78990 1.18210 1.19197 1.19684 1.19453 0.98888 0.90766 1.38420 0.89039 1.18111 0.91388 0.93849 0.90034 1.18163 1.00002 0.80191 0.93773 1.91459 1.92552 1.44171 1.81288 1.65782 1.25059 0.98181 1.29906 1.20025 1.06473 0.91512 1.02437 1.19867 0.91675 0.81156 0.78440 1.92947 1.94003 1.96090 1.35227 1.92927 1.76289 1.54827 1.95015 1.21027 0.95806 0.98345 0.96301 1.19706 1.03702 0.92702 0.99076 1.20199 0.93311 0.98659 0.87658 1.58818 1.39567 1.34194 1.04938 0.89790 0.87414 0.86576 0.92049 0.95109 0.86247 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.57 11.10 55.55 0.62 -17.96 15 2 C 0.08 1.73 4.54 -17.33 -0.08 1.66 15 3 Si 0.91 17.33 29.60 -169.99 -5.03 12.30 15 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 7 C -0.45 -10.57 7.71 -37.78 -0.29 -10.86 15 8 H 0.09 2.03 6.90 -52.49 -0.36 1.67 15 9 C 0.07 1.81 5.41 -106.60 -0.58 1.23 15 10 C 0.24 6.38 7.84 -16.51 -0.13 6.25 15 11 F -0.12 -3.14 14.29 2.25 0.03 -3.10 15 12 N -0.48 -12.17 9.93 -9.08 -0.09 -12.26 15 13 C -0.07 -1.58 6.59 -82.36 -0.54 -2.12 15 14 C 0.34 6.46 5.71 36.01 0.21 6.67 15 15 F -0.20 -4.11 17.04 2.25 0.04 -4.08 15 16 F -0.21 -3.76 16.43 2.25 0.04 -3.72 15 17 C -0.09 -2.00 9.07 -39.52 -0.36 -2.36 15 18 C -0.14 -3.20 5.49 -103.63 -0.57 -3.77 15 19 C 0.13 2.43 6.45 -4.97 -0.03 2.39 15 20 N -0.85 -14.71 9.61 -11.41 -0.11 -14.82 15 21 H 0.29 6.51 8.30 -40.82 -0.34 6.17 15 22 H 0.11 1.68 8.14 -51.93 -0.42 1.25 15 23 H 0.12 2.18 7.57 -52.49 -0.40 1.78 15 24 H 0.06 1.02 8.04 -51.93 -0.42 0.60 15 25 H 0.03 0.56 6.96 -51.93 -0.36 0.20 15 26 H 0.33 4.58 9.08 -39.29 -0.36 4.22 15 27 H 0.35 6.71 8.44 -39.29 -0.33 6.38 15 LS Contribution 251.57 15.07 3.79 3.79 Total: -1.00 -27.36 251.57 -4.87 -32.23 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -1.78 Total: 8.53 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.37 Total: -0.91 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.42 Total: -45.04 kcal Atomic # 9 Polarization: -11.01 SS G_CDS: 0.11 Total: -10.90 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.36 -4.87 -32.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238646094.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.506 kcal (2) G-P(sol) polarization free energy of solvation -27.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds