Wall clock time and date at job start Mon Mar 30 2020 03:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86799 * 119.99879 * 2 1 4 4 H 1.48506 * 109.47188 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47008 * 299.99460 * 3 2 1 6 6 H 1.48496 * 109.47321 * 59.99938 * 3 2 1 7 7 C 1.39960 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99805 * 199.70650 * 7 2 1 9 9 C 1.41278 * 119.99904 * 19.70645 * 7 2 1 10 10 C 1.41123 * 120.67594 * 36.34474 * 9 7 2 11 11 F 1.35098 * 119.83869 * 0.02562 * 10 9 7 12 12 N 1.31716 * 120.32077 * 179.97438 * 10 9 7 13 13 C 1.32084 * 121.94008 * 359.97438 * 12 10 9 14 14 C 1.50704 * 119.31498 * 179.97438 * 13 12 10 15 15 F 1.39895 * 109.46953 * 30.02690 * 14 13 12 16 16 F 1.39900 * 109.46770 * 150.02397 * 14 13 12 17 17 C 1.38571 * 121.37099 * 0.03015 * 13 12 10 18 18 C 1.38060 * 119.49235 * 0.22246 * 17 13 12 19 19 C 1.50706 * 120.88285 * 179.75256 * 18 17 13 20 20 N 1.46900 * 109.47076 * 260.00060 * 19 18 17 21 21 H 0.96994 * 120.00222 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47278 * 270.02753 * 14 13 12 23 23 H 1.08001 * 120.25477 * 179.97438 * 17 13 12 24 24 H 1.08994 * 109.47503 * 20.00221 * 19 18 17 25 25 H 1.08999 * 109.46740 * 140.00471 * 19 18 17 26 26 H 1.00905 * 111.00183 * 180.02562 * 20 19 18 27 27 H 1.00904 * 110.99945 * 303.95811 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3464 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8836 2.3965 1.2124 7 6 2.0082 -1.2121 0.0005 8 1 3.0408 -1.2392 0.3160 9 6 1.3639 -2.3999 -0.4115 10 6 0.4237 -2.3813 -1.4638 11 9 0.1346 -1.2176 -2.0863 12 7 -0.1725 -3.4930 -1.8426 13 6 0.0799 -4.6533 -1.2642 14 6 -0.6369 -5.8888 -1.7448 15 9 -0.9303 -5.7577 -3.1063 16 9 0.1799 -7.0076 -1.5493 17 6 0.9894 -4.7581 -0.2239 18 6 1.6439 -3.6277 0.2231 19 6 2.6350 -3.7048 1.3558 20 7 1.9908 -3.2650 2.6007 21 1 -0.4850 0.8400 -0.0004 22 1 -1.5633 -6.0127 -1.1838 23 1 1.1817 -5.7160 0.2363 24 1 2.9791 -4.7328 1.4683 25 1 3.4855 -3.0585 1.1390 26 1 2.6354 -3.3072 3.3759 27 1 1.6061 -2.3376 2.5007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238646094.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:27 Heat of formation + Delta-G solvation = -140.506090 kcal Electronic energy + Delta-G solvation = -17910.913996 eV Core-core repulsion = 14445.618397 eV Total energy + Delta-G solvation = -3465.295599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.82535 -49.16345 -47.85005 -40.43835 -36.50190 -35.43681 -32.45766 -32.06929 -29.10916 -26.01697 -25.88629 -23.52399 -21.78498 -19.69825 -18.47129 -18.39577 -18.26513 -17.40415 -17.04981 -16.72338 -16.26977 -16.18468 -15.63517 -15.27515 -14.72118 -14.28983 -14.13317 -14.10313 -13.91941 -13.71941 -13.24008 -13.15180 -13.10077 -12.68274 -12.47145 -12.13880 -11.95564 -11.17418 -10.42065 -10.20259 -9.44244 -9.40134 -8.87486 -6.62238 0.43850 0.63545 1.36840 1.43223 1.52763 2.12550 2.53947 2.72391 3.16760 3.23752 3.56176 3.90814 4.09367 4.18859 4.25192 4.50019 4.55308 4.69525 4.86005 5.04921 5.22617 5.37458 5.56169 5.90639 6.12042 6.31725 6.55159 6.61736 6.79799 7.18189 8.13485 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027924 B = 0.008672 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.487791 B = 3228.020507 C = 4019.945207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.249 1.249 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.102 0.898 9 C 0.050 3.950 10 C 0.192 3.808 11 F -0.132 7.132 12 N -0.498 5.498 13 C -0.078 4.078 14 C 0.347 3.653 15 F -0.212 7.212 16 F -0.201 7.201 17 C -0.097 4.097 18 C -0.142 4.142 19 C 0.135 3.865 20 N -0.846 5.846 21 H 0.295 0.705 22 H 0.150 0.850 23 H 0.148 0.852 24 H 0.087 0.913 25 H 0.033 0.967 26 H 0.348 0.652 27 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -3.788 3.914 6.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.172 1.172 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.120 0.880 9 C 0.044 3.956 10 C 0.033 3.967 11 F -0.112 7.112 12 N -0.213 5.213 13 C -0.215 4.215 14 C 0.292 3.708 15 F -0.194 7.194 16 F -0.183 7.183 17 C -0.118 4.118 18 C -0.150 4.150 19 C 0.005 3.995 20 N -0.377 5.377 21 H 0.106 0.894 22 H 0.167 0.833 23 H 0.166 0.834 24 H 0.105 0.895 25 H 0.051 0.949 26 H 0.161 0.839 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.120 -4.258 3.120 5.688 hybrid contribution 1.095 1.807 0.033 2.114 sum 3.215 -2.450 3.153 5.126 Atomic orbital electron populations 1.69805 1.09568 1.31822 1.30594 1.26768 0.95240 1.04776 0.91383 0.85126 0.79769 0.76007 0.78841 1.17241 1.20023 1.18430 1.19685 0.99284 0.91101 1.38751 0.88039 1.18434 0.91599 0.95504 0.90108 1.18534 1.02436 0.80196 0.95575 1.91387 1.92931 1.45131 1.81752 1.65782 1.25799 0.98945 1.30749 1.20811 1.06467 0.91870 1.02342 1.20099 0.92700 0.79805 0.78147 1.92927 1.94042 1.96116 1.36292 1.92940 1.76384 1.54057 1.94897 1.21392 0.95026 0.99482 0.95888 1.20259 1.03441 0.91947 0.99347 1.20238 0.92211 1.00280 0.86790 1.58763 1.40243 1.33421 1.05260 0.89419 0.83331 0.83429 0.89512 0.94870 0.83885 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.84 11.10 21.83 0.24 -39.60 15 2 C 0.04 1.77 4.54 85.26 0.39 2.16 15 3 Si 0.98 35.27 29.60 68.60 2.03 37.30 15 4 H -0.25 -8.49 7.11 99.48 0.71 -7.78 15 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 15 6 H -0.26 -8.76 7.11 99.48 0.71 -8.06 15 7 C -0.46 -21.77 7.71 23.43 0.18 -21.58 15 8 H 0.10 4.43 6.90 -2.91 -0.02 4.41 15 9 C 0.05 2.49 5.41 -21.14 -0.11 2.38 15 10 C 0.19 10.46 7.84 85.42 0.67 11.13 15 11 F -0.13 -7.50 14.29 44.97 0.64 -6.86 15 12 N -0.50 -25.82 9.93 -182.65 -1.81 -27.63 15 13 C -0.08 -3.45 6.59 42.60 0.28 -3.17 15 14 C 0.35 12.27 5.71 71.24 0.41 12.68 15 15 F -0.21 -8.41 17.04 44.97 0.77 -7.64 15 16 F -0.20 -6.65 16.43 44.97 0.74 -5.91 15 17 C -0.10 -3.95 9.07 22.31 0.20 -3.75 15 18 C -0.14 -6.11 5.49 -19.22 -0.11 -6.22 15 19 C 0.13 4.62 6.45 85.56 0.55 5.18 15 20 N -0.85 -27.47 9.61 -190.01 -1.83 -29.30 15 21 H 0.29 13.52 8.30 -92.71 -0.77 12.75 15 22 H 0.15 4.13 8.14 -2.39 -0.02 4.11 15 23 H 0.15 5.00 7.57 -2.91 -0.02 4.98 15 24 H 0.09 2.54 8.04 -2.39 -0.02 2.52 15 25 H 0.03 1.13 6.96 -2.39 -0.02 1.11 15 26 H 0.35 8.75 9.08 -89.69 -0.81 7.94 15 27 H 0.34 12.59 8.44 -89.69 -0.76 11.83 15 Total: -1.00 -59.37 251.57 2.92 -56.45 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -0.32 Total: 24.39 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 2.46 Total: -1.21 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -3.40 Total: -96.53 kcal Atomic # 9 Polarization: -22.56 SS G_CDS: 2.15 Total: -20.41 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Total: -59.37 2.92 -56.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238646094.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.055 kcal (2) G-P(sol) polarization free energy of solvation -59.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds