Wall clock time and date at job start Mon Mar 30 2020 03:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48500 * 109.47171 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46725 * 119.99860 * 3 2 1 6 6 H 1.48500 * 109.47399 * 239.99748 * 3 2 1 7 7 C 1.40041 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99574 * 204.77698 * 7 2 1 9 9 C 1.41516 * 120.00176 * 24.77746 * 7 2 1 10 10 C 1.41122 * 121.01310 * 26.15127 * 9 7 2 11 11 C 1.37629 * 118.91912 * 179.77483 * 10 9 7 12 12 C 1.50707 * 119.47453 * 180.22700 * 11 10 9 13 13 N 1.46903 * 109.46904 * 95.27999 * 12 11 10 14 14 N 1.32078 * 121.05314 * 0.51185 * 11 10 9 15 15 C 1.32167 * 122.28596 * 359.73980 * 14 11 10 16 16 F 1.35098 * 119.53615 * 180.02562 * 15 14 11 17 17 C 1.38097 * 120.93628 * 359.97438 * 15 14 11 18 18 C 1.50699 * 120.58181 * 179.97438 * 17 15 14 19 19 F 1.39902 * 109.47099 * 120.02510 * 18 17 15 20 20 F 1.39896 * 109.47509 * 240.02449 * 18 17 15 21 21 H 0.97002 * 119.99897 * 185.83039 * 1 2 3 22 22 H 1.07995 * 120.54242 * 359.97438 * 10 9 7 23 23 H 1.08997 * 109.47255 * 215.27987 * 12 11 10 24 24 H 1.09001 * 109.47078 * 335.28288 * 12 11 10 25 25 H 1.00895 * 110.99731 * 56.04970 * 13 12 11 26 26 H 1.00903 * 110.99826 * 180.02562 * 13 12 11 27 27 H 1.09000 * 109.47471 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0951 1.6963 1.2126 6 1 3.0952 1.6965 -1.2124 7 6 2.0076 -1.2128 -0.0005 8 1 3.0130 -1.2560 0.3914 9 6 1.3977 -2.3817 -0.5147 10 6 0.3809 -2.3025 -1.4901 11 6 -0.1793 -3.4670 -1.9636 12 6 -1.2625 -3.3972 -3.0091 13 7 -0.6671 -3.5573 -4.3425 14 7 0.2134 -4.6446 -1.5124 15 6 1.1576 -4.7705 -0.5962 16 9 1.5166 -6.0028 -0.1747 17 6 1.7834 -3.6602 -0.0644 18 6 2.8587 -3.8130 0.9803 19 9 4.0516 -3.2565 0.5064 20 9 2.4690 -3.1532 2.1507 21 1 -0.4850 -0.8357 0.0853 22 1 0.0500 -1.3439 -1.8612 23 1 -1.9861 -4.1938 -2.8363 24 1 -1.7640 -2.4313 -2.9487 25 1 -0.1416 -4.4165 -4.4030 26 1 -1.3736 -3.5137 -5.0615 27 1 3.0108 -4.8711 1.1932 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238651126.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:39 Heat of formation + Delta-G solvation = -135.152041 kcal Electronic energy + Delta-G solvation = -18025.547734 eV Core-core repulsion = 14560.484304 eV Total energy + Delta-G solvation = -3465.063430 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.34134 -47.93241 -46.00742 -38.86221 -35.02499 -34.02043 -31.35973 -29.81981 -26.96300 -25.45759 -23.43434 -21.89989 -20.70952 -18.25607 -17.20951 -16.50971 -16.32469 -16.07927 -15.54476 -15.10406 -15.03858 -14.28748 -14.21506 -13.73957 -13.19198 -12.94194 -12.63493 -12.50067 -12.41570 -11.91288 -11.79224 -11.59158 -11.39261 -11.28693 -10.54468 -10.25098 -10.01053 -9.47408 -8.65768 -8.56153 -8.34547 -7.98318 -7.57071 -5.03181 1.98765 2.44415 3.04132 3.13013 3.25433 3.79999 4.17911 4.48317 4.68459 4.82779 5.17404 5.20751 5.41214 5.57901 5.70086 5.93510 6.01836 6.30083 6.48944 6.81283 6.93012 7.13807 7.31422 7.40286 7.64612 7.69570 7.77607 8.15702 8.38380 8.89285 9.64864 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.017210 B = 0.012021 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.613577 B = 2328.729261 C = 3590.981459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.039 3.961 3 Si 1.069 2.931 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.469 4.469 8 H 0.095 0.905 9 C 0.140 3.860 10 C -0.236 4.236 11 C 0.161 3.839 12 C 0.122 3.878 13 N -0.842 5.842 14 N -0.608 5.608 15 C 0.357 3.643 16 F -0.138 7.138 17 C -0.367 4.367 18 C 0.342 3.658 19 F -0.209 7.209 20 F -0.204 7.204 21 H 0.302 0.698 22 H 0.124 0.876 23 H 0.036 0.964 24 H 0.082 0.918 25 H 0.344 0.656 26 H 0.337 0.663 27 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -1.899 -1.651 2.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.187 4.187 3 Si 0.891 3.109 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.497 4.497 8 H 0.113 0.887 9 C 0.132 3.868 10 C -0.259 4.259 11 C 0.033 3.967 12 C -0.009 4.009 13 N -0.372 5.372 14 N -0.330 5.330 15 C 0.203 3.797 16 F -0.117 7.117 17 C -0.376 4.376 18 C 0.288 3.712 19 F -0.190 7.190 20 F -0.185 7.185 21 H 0.116 0.884 22 H 0.142 0.858 23 H 0.054 0.946 24 H 0.100 0.900 25 H 0.156 0.844 26 H 0.149 0.851 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.097 -0.342 -1.863 1.897 hybrid contribution 0.058 -2.124 0.452 2.173 sum 0.155 -2.467 -1.411 2.846 Atomic orbital electron populations 1.70445 1.08290 1.34713 1.25042 1.27344 0.95550 1.04894 0.90880 0.83570 0.75760 0.72940 0.78673 1.19383 1.19498 1.19393 1.20957 1.03102 0.93090 1.32528 0.88681 1.17362 0.89475 0.91035 0.88935 1.21856 1.03810 0.98270 1.01996 1.20042 0.95009 0.87421 0.94242 1.20506 0.92925 1.00770 0.86741 1.58669 1.30328 1.44450 1.03726 1.66470 1.19325 1.28953 1.18240 1.17393 0.92161 0.78045 0.92079 1.91461 1.90018 1.42168 1.88061 1.20508 1.11568 0.94448 1.11046 1.19618 0.79536 0.92228 0.79854 1.92921 1.48893 1.88215 1.88992 1.92949 1.91323 1.84262 1.50010 0.88385 0.85810 0.94614 0.89987 0.84380 0.85128 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.68 12.37 55.55 0.69 -17.99 15 2 C 0.04 0.93 4.99 -17.34 -0.09 0.84 15 3 Si 1.07 20.27 30.00 -169.99 -5.10 15.17 15 4 H -0.27 -5.01 7.11 56.52 0.40 -4.61 15 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 15 6 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 7 C -0.47 -11.82 7.86 -37.66 -0.30 -12.11 15 8 H 0.10 2.42 6.34 -52.49 -0.33 2.08 15 9 C 0.14 3.54 5.28 -106.54 -0.56 2.98 15 10 C -0.24 -5.69 7.63 -38.71 -0.30 -5.98 15 11 C 0.16 3.59 6.28 -82.71 -0.52 3.07 15 12 C 0.12 2.17 7.09 -4.97 -0.04 2.14 15 13 N -0.84 -13.41 9.61 -11.40 -0.11 -13.52 15 14 N -0.61 -14.18 10.26 -9.98 -0.10 -14.28 15 15 C 0.36 8.39 8.36 -17.46 -0.15 8.25 15 16 F -0.14 -2.94 16.22 2.25 0.04 -2.90 15 17 C -0.37 -8.86 5.44 -103.66 -0.56 -9.42 15 18 C 0.34 7.43 4.96 36.01 0.18 7.61 15 19 F -0.21 -4.64 15.83 2.25 0.04 -4.61 15 20 F -0.20 -4.65 16.64 2.25 0.04 -4.61 15 21 H 0.30 7.60 6.68 -40.82 -0.27 7.33 15 22 H 0.12 3.01 6.64 -52.49 -0.35 2.66 15 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 24 H 0.08 1.39 8.03 -51.93 -0.42 0.98 15 25 H 0.34 5.51 8.98 -39.29 -0.35 5.15 15 26 H 0.34 4.19 9.08 -39.29 -0.36 3.83 15 27 H 0.10 1.77 7.15 -51.93 -0.37 1.40 15 LS Contribution 251.20 15.07 3.79 3.79 Total: -1.00 -26.95 251.20 -4.73 -31.67 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -1.67 Total: 9.93 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.33 Total: -2.64 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.48 Total: -45.79 kcal Atomic # 9 Polarization: -12.24 SS G_CDS: 0.11 Total: -12.13 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.10 Total: 15.17 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.95 -4.73 -31.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238651126.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.480 kcal (2) G-P(sol) polarization free energy of solvation -26.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds