Wall clock time and date at job start Mon Mar 30 2020 03:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48500 * 109.47171 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46725 * 119.99860 * 3 2 1 6 6 H 1.48500 * 109.47399 * 239.99748 * 3 2 1 7 7 C 1.40041 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99574 * 204.77698 * 7 2 1 9 9 C 1.41516 * 120.00176 * 24.77746 * 7 2 1 10 10 C 1.41122 * 121.01310 * 26.15127 * 9 7 2 11 11 C 1.37629 * 118.91912 * 179.77483 * 10 9 7 12 12 C 1.50707 * 119.47453 * 180.22700 * 11 10 9 13 13 N 1.46903 * 109.46904 * 95.27999 * 12 11 10 14 14 N 1.32078 * 121.05314 * 0.51185 * 11 10 9 15 15 C 1.32167 * 122.28596 * 359.73980 * 14 11 10 16 16 F 1.35098 * 119.53615 * 180.02562 * 15 14 11 17 17 C 1.38097 * 120.93628 * 359.97438 * 15 14 11 18 18 C 1.50699 * 120.58181 * 179.97438 * 17 15 14 19 19 F 1.39902 * 109.47099 * 120.02510 * 18 17 15 20 20 F 1.39896 * 109.47509 * 240.02449 * 18 17 15 21 21 H 0.97002 * 119.99897 * 185.83039 * 1 2 3 22 22 H 1.07995 * 120.54242 * 359.97438 * 10 9 7 23 23 H 1.08997 * 109.47255 * 215.27987 * 12 11 10 24 24 H 1.09001 * 109.47078 * 335.28288 * 12 11 10 25 25 H 1.00895 * 110.99731 * 56.04970 * 13 12 11 26 26 H 1.00903 * 110.99826 * 180.02562 * 13 12 11 27 27 H 1.09000 * 109.47471 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0951 1.6963 1.2126 6 1 3.0952 1.6965 -1.2124 7 6 2.0076 -1.2128 -0.0005 8 1 3.0130 -1.2560 0.3914 9 6 1.3977 -2.3817 -0.5147 10 6 0.3809 -2.3025 -1.4901 11 6 -0.1793 -3.4670 -1.9636 12 6 -1.2625 -3.3972 -3.0091 13 7 -0.6671 -3.5573 -4.3425 14 7 0.2134 -4.6446 -1.5124 15 6 1.1576 -4.7705 -0.5962 16 9 1.5166 -6.0028 -0.1747 17 6 1.7834 -3.6602 -0.0644 18 6 2.8587 -3.8130 0.9803 19 9 4.0516 -3.2565 0.5064 20 9 2.4690 -3.1532 2.1507 21 1 -0.4850 -0.8357 0.0853 22 1 0.0500 -1.3439 -1.8612 23 1 -1.9861 -4.1938 -2.8363 24 1 -1.7640 -2.4313 -2.9487 25 1 -0.1416 -4.4165 -4.4030 26 1 -1.3736 -3.5137 -5.0615 27 1 3.0108 -4.8711 1.1932 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238651126.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:39 Heat of formation + Delta-G solvation = -153.135978 kcal Electronic energy + Delta-G solvation = -18026.327576 eV Core-core repulsion = 14560.484304 eV Total energy + Delta-G solvation = -3465.843272 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.11763 -49.69998 -47.78094 -40.66631 -36.76266 -35.58401 -33.12979 -31.57979 -28.72377 -27.20504 -25.06223 -23.72787 -22.46456 -20.03982 -18.97029 -18.25786 -18.09957 -17.88007 -17.12970 -16.87795 -16.64659 -15.86473 -15.67273 -15.47223 -14.91105 -14.71552 -14.37712 -14.27655 -14.19580 -13.66474 -13.40381 -13.32873 -13.01596 -12.89285 -12.08429 -11.88690 -11.78221 -11.22504 -10.46056 -10.39037 -9.87281 -9.65030 -9.42603 -6.94213 0.15820 0.59602 1.49772 1.59753 1.80274 2.23184 2.42017 2.70586 3.00218 3.05484 3.42998 3.69404 3.84259 3.90949 4.12406 4.26018 4.39684 4.61612 4.76320 5.01032 5.07971 5.25704 5.48290 5.76830 5.88020 6.07703 6.27027 6.51752 6.57610 7.05582 7.76135 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.017210 B = 0.012021 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.613577 B = 2328.729261 C = 3590.981459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.010 3.990 3 Si 1.114 2.886 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.493 4.493 8 H 0.087 0.913 9 C 0.118 3.882 10 C -0.254 4.254 11 C 0.164 3.836 12 C 0.127 3.873 13 N -0.845 5.845 14 N -0.611 5.611 15 C 0.351 3.649 16 F -0.125 7.125 17 C -0.384 4.384 18 C 0.340 3.660 19 F -0.213 7.213 20 F -0.212 7.212 21 H 0.290 0.710 22 H 0.116 0.884 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.344 0.656 26 H 0.359 0.641 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -1.911 -2.171 2.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.211 4.211 3 Si 0.930 3.070 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.184 1.184 7 C -0.521 4.521 8 H 0.105 0.895 9 C 0.110 3.890 10 C -0.277 4.277 11 C 0.035 3.965 12 C -0.004 4.004 13 N -0.377 5.377 14 N -0.333 5.333 15 C 0.198 3.802 16 F -0.104 7.104 17 C -0.392 4.392 18 C 0.286 3.714 19 F -0.194 7.194 20 F -0.194 7.194 21 H 0.102 0.898 22 H 0.134 0.866 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.157 0.843 26 H 0.174 0.826 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.100 -0.382 -2.392 2.424 hybrid contribution 0.021 -2.237 0.583 2.312 sum 0.121 -2.620 -1.809 3.186 Atomic orbital electron populations 1.70541 1.08754 1.33813 1.26449 1.28619 0.95600 1.07449 0.89464 0.83039 0.75021 0.69522 0.79451 1.18625 1.18270 1.18405 1.21076 1.03031 0.94122 1.33898 0.89532 1.17729 0.90094 0.91785 0.89374 1.21857 1.04609 0.98656 1.02610 1.20674 0.94995 0.86521 0.94278 1.20488 0.91620 1.01835 0.86505 1.58585 1.31195 1.44575 1.03331 1.66620 1.19249 1.29264 1.18195 1.17532 0.92154 0.78465 0.92096 1.91482 1.89864 1.41210 1.87876 1.20820 1.12332 0.94315 1.11724 1.19906 0.78723 0.93795 0.78967 1.92905 1.48962 1.88502 1.89065 1.92927 1.91426 1.84682 1.50333 0.89777 0.86564 0.93203 0.89155 0.84322 0.82635 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.15 12.37 21.84 0.27 -37.88 15 2 C 0.01 0.47 4.99 85.29 0.43 0.90 15 3 Si 1.11 40.09 30.00 68.60 2.06 42.15 15 4 H -0.26 -9.07 7.11 99.48 0.71 -8.36 15 5 H -0.26 -8.76 7.11 99.48 0.71 -8.05 15 6 H -0.26 -8.90 7.11 99.48 0.71 -8.19 15 7 C -0.49 -25.10 7.86 23.52 0.18 -24.91 15 8 H 0.09 4.45 6.34 -2.91 -0.02 4.43 15 9 C 0.12 6.01 5.28 -21.10 -0.11 5.90 15 10 C -0.25 -12.29 7.63 22.83 0.17 -12.12 15 11 C 0.16 7.17 6.28 42.38 0.27 7.44 15 12 C 0.13 4.30 7.09 85.56 0.61 4.91 15 13 N -0.84 -25.10 9.61 -189.99 -1.83 -26.93 15 14 N -0.61 -27.81 10.26 -185.48 -1.90 -29.71 15 15 C 0.35 16.15 8.36 84.61 0.71 16.85 15 16 F -0.13 -5.12 16.22 44.97 0.73 -4.39 15 17 C -0.38 -18.37 5.44 -19.24 -0.10 -18.47 15 18 C 0.34 14.48 4.96 71.24 0.35 14.83 15 19 F -0.21 -9.34 15.83 44.97 0.71 -8.63 15 20 F -0.21 -9.60 16.64 44.97 0.75 -8.85 15 21 H 0.29 14.85 6.68 -92.71 -0.62 14.23 15 22 H 0.12 5.72 6.64 -2.91 -0.02 5.70 15 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 24 H 0.09 2.92 8.03 -2.39 -0.02 2.90 15 25 H 0.34 10.33 8.98 -89.70 -0.81 9.52 15 26 H 0.36 7.98 9.08 -89.69 -0.81 7.16 15 27 H 0.13 4.64 7.15 -2.39 -0.02 4.62 15 Total: -1.00 -56.49 251.20 3.08 -53.41 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -0.21 Total: 25.49 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 2.50 Total: -4.66 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -3.46 Total: -94.51 kcal Atomic # 9 Polarization: -24.06 SS G_CDS: 2.19 Total: -21.87 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.06 Total: 42.15 kcal Total: -56.49 3.08 -53.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238651126.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.729 kcal (2) G-P(sol) polarization free energy of solvation -56.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds