Wall clock time and date at job start Mon Mar 30 2020 03:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48500 * 109.46549 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47085 * 299.99628 * 3 2 1 6 6 H 1.48501 * 109.47323 * 59.99997 * 3 2 1 7 7 C 1.39913 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00194 * 165.15928 * 7 2 1 9 9 C 1.41352 * 120.00192 * 345.15895 * 7 2 1 10 10 C 1.41164 * 120.62476 * 333.01683 * 9 7 2 11 11 C 1.36860 * 118.34616 * 180.02562 * 10 9 7 12 12 C 1.50693 * 120.23657 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47272 * 104.98033 * 12 11 10 14 14 C 1.39008 * 119.53191 * 0.02562 * 11 10 9 15 15 F 1.35103 * 119.36444 * 179.97438 * 14 11 10 16 16 N 1.32284 * 121.26087 * 0.27533 * 14 11 10 17 17 C 1.31546 * 121.80535 * 359.42721 * 16 14 11 18 18 C 1.50699 * 119.84686 * 180.30990 * 17 16 14 19 19 F 1.39898 * 109.47302 * 21.41091 * 18 17 16 20 20 F 1.39902 * 109.46961 * 141.40645 * 18 17 16 21 21 H 0.97002 * 119.99977 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.82825 * 0.02562 * 10 9 7 23 23 H 1.08995 * 109.47695 * 224.98278 * 12 11 10 24 24 H 1.09007 * 109.47144 * 344.98073 * 12 11 10 25 25 H 1.00899 * 111.00435 * 180.02562 * 13 12 11 26 26 H 1.00900 * 110.99773 * 303.95743 * 13 12 11 27 27 H 1.09004 * 109.47282 * 261.40350 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3463 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8838 2.3965 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0611 -1.2275 -0.2390 9 6 1.3367 -2.4153 0.3146 10 6 0.1956 -2.4064 1.1456 11 6 -0.4178 -3.5988 1.4198 12 6 -1.6393 -3.6386 2.3014 13 7 -2.8339 -3.8525 1.4736 14 6 0.0939 -4.7728 0.8793 15 9 -0.5140 -5.9480 1.1527 16 7 1.1680 -4.7620 0.1073 17 6 1.7942 -3.6451 -0.1939 18 6 3.0101 -3.6832 -1.0833 19 9 2.9996 -4.8616 -1.8372 20 9 2.9939 -2.5796 -1.9429 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1840 -1.4818 1.5547 23 1 -1.5435 -4.4538 3.0185 24 1 -1.7324 -2.6934 2.8363 25 1 -3.6670 -3.8827 2.0420 26 1 -2.9097 -3.1447 0.7586 27 1 3.9104 -3.6525 -0.4695 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238651314.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:24 Heat of formation + Delta-G solvation = -124.242928 kcal Electronic energy + Delta-G solvation = -17943.336810 eV Core-core repulsion = 14478.746434 eV Total energy + Delta-G solvation = -3464.590376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.97516 -47.51537 -45.99493 -38.68955 -34.71281 -34.27877 -30.82414 -30.48245 -26.82375 -25.30564 -23.32404 -21.93172 -20.45584 -17.63296 -17.01988 -16.74128 -16.49749 -15.70598 -15.52771 -15.20469 -14.72294 -14.31438 -13.79011 -13.39782 -12.89773 -12.78018 -12.49664 -12.40147 -12.25274 -12.09008 -11.71959 -11.67817 -11.33741 -11.20794 -10.72989 -10.57398 -9.96372 -9.61837 -8.69891 -8.46151 -8.23715 -7.73714 -7.15348 -4.76473 2.09630 2.52468 2.89930 2.93499 2.96492 3.67236 4.20442 4.54355 4.92326 4.98271 5.21645 5.38393 5.59293 5.65514 5.89974 5.91640 6.10422 6.40781 6.60145 6.76094 6.83585 7.26073 7.40553 7.50381 7.64525 7.82955 8.05037 8.30007 8.34136 9.02847 9.76716 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.011109 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.070518 B = 2519.801670 C = 3829.086557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.425 4.425 8 H 0.094 0.906 9 C 0.081 3.919 10 C -0.097 4.097 11 C -0.124 4.124 12 C 0.116 3.884 13 N -0.842 5.842 14 C 0.185 3.815 15 F -0.138 7.138 16 N -0.461 5.461 17 C -0.066 4.066 18 C 0.350 3.650 19 F -0.207 7.207 20 F -0.192 7.192 21 H 0.288 0.712 22 H 0.138 0.862 23 H 0.072 0.928 24 H 0.032 0.968 25 H 0.334 0.666 26 H 0.344 0.656 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.367 1.870 3.159 3.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.147 4.147 3 Si 0.743 3.257 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.453 4.453 8 H 0.112 0.888 9 C 0.076 3.924 10 C -0.124 4.124 11 C -0.128 4.128 12 C -0.015 4.015 13 N -0.371 5.371 14 C 0.027 3.973 15 F -0.117 7.117 16 N -0.173 5.173 17 C -0.206 4.206 18 C 0.295 3.705 19 F -0.188 7.188 20 F -0.174 7.174 21 H 0.099 0.901 22 H 0.155 0.845 23 H 0.091 0.909 24 H 0.050 0.950 25 H 0.146 0.854 26 H 0.157 0.843 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.794 0.520 2.591 2.760 hybrid contribution -0.534 2.219 0.534 2.344 sum 0.259 2.738 3.126 4.164 Atomic orbital electron populations 1.69769 1.07846 1.30210 1.32614 1.26047 0.94916 1.02044 0.91714 0.86049 0.81074 0.79739 0.78876 1.17853 1.19489 1.19448 1.19792 0.97778 0.90107 1.37603 0.88757 1.18091 0.92092 0.92482 0.89785 1.21276 0.97371 0.95894 0.97849 1.19914 0.98147 0.93264 1.01504 1.20448 0.88113 0.99278 0.93659 1.58664 1.04251 1.56606 1.17625 1.17129 0.94372 0.80591 1.05219 1.91428 1.81387 1.46483 1.92441 1.65847 1.07020 1.32211 1.12223 1.20817 1.02811 0.89424 1.07558 1.19600 0.97336 0.70567 0.82974 1.92922 1.97832 1.49136 1.78907 1.92985 1.97679 1.54011 1.72687 0.90126 0.84466 0.90928 0.95027 0.85438 0.84326 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.81 10.99 55.55 0.61 -17.20 15 2 C 0.07 1.63 5.21 -17.34 -0.09 1.54 15 3 Si 0.92 16.71 29.58 -169.99 -5.03 11.68 15 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 5 H -0.27 -4.93 7.11 56.52 0.40 -4.52 15 6 H -0.27 -4.78 7.11 56.52 0.40 -4.38 15 7 C -0.42 -10.00 7.41 -37.77 -0.28 -10.28 15 8 H 0.09 2.12 6.55 -52.49 -0.34 1.77 15 9 C 0.08 1.98 5.54 -106.67 -0.59 1.39 15 10 C -0.10 -2.28 8.35 -38.97 -0.33 -2.61 15 11 C -0.12 -2.77 5.38 -104.84 -0.56 -3.34 15 12 C 0.12 2.10 6.60 -4.98 -0.03 2.07 15 13 N -0.84 -14.11 9.61 -11.41 -0.11 -14.22 15 14 C 0.18 4.52 8.37 -17.07 -0.14 4.38 15 15 F -0.14 -3.27 16.76 2.25 0.04 -3.24 15 16 N -0.46 -11.75 9.87 -9.09 -0.09 -11.84 15 17 C -0.07 -1.61 6.65 -81.78 -0.54 -2.15 15 18 C 0.35 7.50 5.21 36.01 0.19 7.68 15 19 F -0.21 -4.58 16.98 2.25 0.04 -4.54 15 20 F -0.19 -4.27 14.70 2.25 0.03 -4.24 15 21 H 0.29 5.90 8.30 -40.82 -0.34 5.56 15 22 H 0.14 3.17 6.31 -52.49 -0.33 2.84 15 23 H 0.07 1.26 8.08 -51.93 -0.42 0.84 15 24 H 0.03 0.53 7.97 -51.93 -0.41 0.11 15 25 H 0.33 4.43 9.08 -39.29 -0.36 4.07 15 26 H 0.34 5.86 8.98 -39.29 -0.35 5.51 15 27 H 0.10 1.80 8.14 -51.93 -0.42 1.38 15 LS Contribution 251.90 15.07 3.80 3.80 Total: -1.00 -27.25 251.90 -4.87 -32.12 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -1.77 Total: 8.99 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.38 Total: -1.32 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.41 Total: -43.25 kcal Atomic # 9 Polarization: -12.13 SS G_CDS: 0.11 Total: -12.02 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.25 -4.87 -32.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238651314.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.123 kcal (2) G-P(sol) polarization free energy of solvation -27.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds