Wall clock time and date at job start Mon Mar 30 2020 03:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48500 * 109.46549 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47085 * 299.99628 * 3 2 1 6 6 H 1.48501 * 109.47323 * 59.99997 * 3 2 1 7 7 C 1.39913 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00194 * 165.15928 * 7 2 1 9 9 C 1.41352 * 120.00192 * 345.15895 * 7 2 1 10 10 C 1.41164 * 120.62476 * 333.01683 * 9 7 2 11 11 C 1.36860 * 118.34616 * 180.02562 * 10 9 7 12 12 C 1.50693 * 120.23657 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47272 * 104.98033 * 12 11 10 14 14 C 1.39008 * 119.53191 * 0.02562 * 11 10 9 15 15 F 1.35103 * 119.36444 * 179.97438 * 14 11 10 16 16 N 1.32284 * 121.26087 * 0.27533 * 14 11 10 17 17 C 1.31546 * 121.80535 * 359.42721 * 16 14 11 18 18 C 1.50699 * 119.84686 * 180.30990 * 17 16 14 19 19 F 1.39898 * 109.47302 * 21.41091 * 18 17 16 20 20 F 1.39902 * 109.46961 * 141.40645 * 18 17 16 21 21 H 0.97002 * 119.99977 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.82825 * 0.02562 * 10 9 7 23 23 H 1.08995 * 109.47695 * 224.98278 * 12 11 10 24 24 H 1.09007 * 109.47144 * 344.98073 * 12 11 10 25 25 H 1.00899 * 111.00435 * 180.02562 * 13 12 11 26 26 H 1.00900 * 110.99773 * 303.95743 * 13 12 11 27 27 H 1.09004 * 109.47282 * 261.40350 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3463 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8838 2.3965 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0611 -1.2275 -0.2390 9 6 1.3367 -2.4153 0.3146 10 6 0.1956 -2.4064 1.1456 11 6 -0.4178 -3.5988 1.4198 12 6 -1.6393 -3.6386 2.3014 13 7 -2.8339 -3.8525 1.4736 14 6 0.0939 -4.7728 0.8793 15 9 -0.5140 -5.9480 1.1527 16 7 1.1680 -4.7620 0.1073 17 6 1.7942 -3.6451 -0.1939 18 6 3.0101 -3.6832 -1.0833 19 9 2.9996 -4.8616 -1.8372 20 9 2.9939 -2.5796 -1.9429 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1840 -1.4818 1.5547 23 1 -1.5435 -4.4538 3.0185 24 1 -1.7324 -2.6934 2.8363 25 1 -3.6670 -3.8827 2.0420 26 1 -2.9097 -3.1447 0.7586 27 1 3.9104 -3.6525 -0.4695 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238651314.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:24 Heat of formation + Delta-G solvation = -142.492290 kcal Electronic energy + Delta-G solvation = -17944.128162 eV Core-core repulsion = 14478.746434 eV Total energy + Delta-G solvation = -3465.381727 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.69512 -49.36106 -47.72191 -40.46615 -36.25173 -36.01530 -32.55506 -32.18030 -28.53543 -27.00244 -24.94408 -23.72132 -22.17404 -19.37125 -18.80621 -18.49336 -18.19312 -17.29034 -17.18280 -16.89641 -16.48332 -15.94671 -15.32835 -14.91979 -14.64169 -14.40745 -14.19466 -14.15509 -13.99912 -13.81282 -13.44052 -13.35449 -12.91004 -12.79073 -12.34363 -12.14249 -11.64815 -11.28766 -10.47737 -10.25359 -9.62408 -9.52811 -8.85275 -6.56732 0.33397 0.73377 1.42436 1.47850 1.57893 2.16447 2.47656 2.83798 3.22064 3.30363 3.65113 3.81539 3.97444 4.05372 4.24494 4.33369 4.60255 4.72227 4.86336 5.03687 5.13059 5.49199 5.60124 5.85568 6.14648 6.26183 6.51193 6.57064 6.63438 7.19486 8.09766 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.011109 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.070518 B = 2519.801670 C = 3829.086557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.038 3.962 3 Si 0.989 3.011 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.438 4.438 8 H 0.101 0.899 9 C 0.059 3.941 10 C -0.110 4.110 11 C -0.117 4.117 12 C 0.120 3.880 13 N -0.848 5.848 14 C 0.155 3.845 15 F -0.140 7.140 16 N -0.482 5.482 17 C -0.091 4.091 18 C 0.349 3.651 19 F -0.213 7.213 20 F -0.199 7.199 21 H 0.299 0.701 22 H 0.138 0.862 23 H 0.081 0.919 24 H 0.049 0.951 25 H 0.355 0.645 26 H 0.342 0.658 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 3.363 3.623 4.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.119 0.881 9 C 0.054 3.946 10 C -0.137 4.137 11 C -0.121 4.121 12 C -0.011 4.011 13 N -0.379 5.379 14 C -0.002 4.002 15 F -0.120 7.120 16 N -0.194 5.194 17 C -0.231 4.231 18 C 0.295 3.705 19 F -0.195 7.195 20 F -0.180 7.180 21 H 0.110 0.890 22 H 0.156 0.844 23 H 0.099 0.901 24 H 0.067 0.933 25 H 0.170 0.830 26 H 0.155 0.845 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.959 1.989 3.068 3.780 hybrid contribution -0.646 1.788 0.369 1.937 sum 0.312 3.777 3.436 5.116 Atomic orbital electron populations 1.69785 1.09104 1.31843 1.31672 1.26891 0.95627 1.04876 0.90754 0.85023 0.79771 0.75302 0.79072 1.17464 1.19363 1.18354 1.20089 0.98238 0.90574 1.37587 0.88099 1.18434 0.92807 0.93063 0.90309 1.21325 0.97731 0.96228 0.98379 1.20203 0.98980 0.92059 1.00862 1.20433 0.86985 1.00545 0.93103 1.58582 1.04809 1.56587 1.17970 1.17448 0.95014 0.81255 1.06531 1.91405 1.81405 1.46598 1.92549 1.65826 1.07703 1.33008 1.12859 1.21255 1.04047 0.89281 1.08537 1.19919 0.97863 0.70033 0.82720 1.92901 1.97869 1.49572 1.79122 1.92962 1.97717 1.54360 1.72955 0.88990 0.84424 0.90104 0.93307 0.83044 0.84542 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -35.55 10.99 21.82 0.24 -35.31 15 2 C 0.04 1.61 5.21 85.24 0.44 2.05 15 3 Si 0.99 32.50 29.58 68.60 2.03 34.53 15 4 H -0.25 -8.08 7.11 99.48 0.71 -7.37 15 5 H -0.27 -8.77 7.11 99.48 0.71 -8.06 15 6 H -0.26 -8.07 7.11 99.48 0.71 -7.36 15 7 C -0.44 -20.21 7.41 23.44 0.17 -20.04 15 8 H 0.10 4.40 6.55 -2.91 -0.02 4.39 15 9 C 0.06 2.90 5.54 -21.19 -0.12 2.78 15 10 C -0.11 -5.15 8.35 22.67 0.19 -4.96 15 11 C -0.12 -5.20 5.38 -20.01 -0.11 -5.31 15 12 C 0.12 4.20 6.60 85.56 0.56 4.76 15 13 N -0.85 -27.22 9.61 -190.02 -1.83 -29.04 15 14 C 0.16 7.63 8.37 84.81 0.71 8.34 15 15 F -0.14 -6.67 16.76 44.97 0.75 -5.92 15 16 N -0.48 -24.80 9.87 -182.66 -1.80 -26.60 15 17 C -0.09 -4.45 6.65 43.21 0.29 -4.17 15 18 C 0.35 14.72 5.21 71.24 0.37 15.09 15 19 F -0.21 -9.38 16.98 44.97 0.76 -8.62 15 20 F -0.20 -8.68 14.70 44.97 0.66 -8.02 15 21 H 0.30 11.77 8.30 -92.71 -0.77 11.01 15 22 H 0.14 6.30 6.31 -2.91 -0.02 6.28 15 23 H 0.08 2.69 8.08 -2.39 -0.02 2.67 15 24 H 0.05 1.53 7.97 -2.38 -0.02 1.51 15 25 H 0.35 8.71 9.08 -89.70 -0.81 7.89 15 26 H 0.34 11.29 8.98 -89.69 -0.81 10.49 15 27 H 0.14 4.81 8.14 -2.39 -0.02 4.79 15 Total: -1.00 -57.15 251.90 2.97 -54.18 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.36 Total: 26.24 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 2.51 Total: -1.44 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -3.39 Total: -90.95 kcal Atomic # 9 Polarization: -24.73 SS G_CDS: 2.18 Total: -22.56 kcal Atomic # 14 Polarization: 32.50 SS G_CDS: 2.03 Total: 34.53 kcal Total: -57.15 2.97 -54.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238651314.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.310 kcal (2) G-P(sol) polarization free energy of solvation -57.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds