Wall clock time and date at job start Mon Mar 30 2020 03:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99998 * 2 1 4 4 H 1.48502 * 109.47201 * 240.00209 * 3 2 1 5 5 H 1.48507 * 109.46948 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47022 * 120.00046 * 3 2 1 7 7 C 1.40024 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00407 * 179.97438 * 7 2 1 9 9 C 1.41431 * 119.99835 * 0.02562 * 7 2 1 10 10 N 1.33666 * 119.81248 * 359.97438 * 9 7 2 11 11 C 1.31435 * 121.57440 * 179.97438 * 10 9 7 12 12 C 1.50706 * 119.47708 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46577 * 274.99767 * 12 11 10 14 14 C 1.38692 * 121.04653 * 0.25511 * 11 10 9 15 15 C 1.39179 * 119.52188 * 359.49798 * 14 11 10 16 16 F 1.35106 * 120.73192 * 180.24251 * 15 14 11 17 17 C 1.38495 * 118.53701 * 0.48983 * 15 14 11 18 18 C 1.50697 * 120.52509 * 179.73020 * 17 15 14 19 19 F 1.39903 * 109.47149 * 120.02314 * 18 17 15 20 20 F 1.39899 * 109.47407 * 240.02122 * 18 17 15 21 21 H 0.96996 * 120.00219 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47318 * 34.99274 * 12 11 10 23 23 H 1.09000 * 109.47161 * 154.99905 * 12 11 10 24 24 H 1.00900 * 110.99481 * 179.97438 * 13 12 11 25 25 H 1.00896 * 111.00594 * 303.95433 * 13 12 11 26 26 H 1.08002 * 120.23602 * 179.71915 * 14 11 10 27 27 H 1.09002 * 109.47491 * 0.02625 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3005 -2.4375 -0.0016 10 7 -0.0362 -2.4331 -0.0016 11 6 -0.7280 -3.5506 -0.0031 12 6 -2.2339 -3.4906 -0.0025 13 7 -2.7177 -3.3527 1.3777 14 6 -0.0942 -4.7843 0.0005 15 6 1.2964 -4.8409 -0.0048 16 9 1.9390 -6.0293 -0.0063 17 6 2.0070 -3.6521 -0.0032 18 6 3.5139 -3.6611 -0.0026 19 9 3.9846 -3.0027 -1.1437 20 9 3.9838 -3.0061 1.1408 21 1 -0.4850 0.8400 0.0004 22 1 -2.5636 -2.6340 -0.5903 23 1 -2.6342 -4.4061 -0.4381 24 1 -3.7254 -3.3098 1.4050 25 1 -2.3715 -4.1013 1.9588 26 1 -0.6756 -5.6944 0.0038 27 1 3.8712 -4.6909 -0.0041 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238658262.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:47 Heat of formation + Delta-G solvation = -120.276127 kcal Electronic energy + Delta-G solvation = -18023.800447 eV Core-core repulsion = 14559.382085 eV Total energy + Delta-G solvation = -3464.418362 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.29786 -47.89066 -45.93753 -38.46445 -34.60412 -33.41577 -30.94608 -30.16989 -26.69744 -25.89350 -23.04689 -21.80821 -20.21827 -17.97956 -16.98564 -16.24364 -16.19395 -15.90412 -15.16534 -15.05247 -14.86235 -14.71465 -13.91845 -13.38131 -13.17855 -12.89397 -12.60551 -12.37734 -12.35587 -11.89621 -11.64947 -11.42106 -11.16602 -10.89386 -10.76988 -10.35089 -9.80216 -9.48126 -8.27487 -8.19958 -7.92823 -7.87740 -6.65194 -4.83351 2.28480 2.55925 3.01979 3.05806 3.09470 3.83495 4.43532 4.73884 5.04235 5.19482 5.21749 5.43948 5.56889 5.70618 5.85917 6.11575 6.19537 6.30265 6.56620 6.83617 6.96033 7.09268 7.14522 7.55050 7.72704 7.88515 8.03386 8.33522 8.60886 9.81080 10.04966 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.012702 C = 0.007757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.075519 B = 2203.858193 C = 3608.686621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.688 5.688 2 C 0.063 3.937 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.096 0.904 9 C 0.284 3.716 10 N -0.457 5.457 11 C 0.191 3.809 12 C 0.123 3.877 13 N -0.834 5.834 14 C -0.356 4.356 15 C 0.193 3.807 16 F -0.155 7.155 17 C -0.380 4.380 18 C 0.341 3.659 19 F -0.207 7.207 20 F -0.207 7.207 21 H 0.280 0.720 22 H 0.085 0.915 23 H 0.027 0.973 24 H 0.334 0.666 25 H 0.337 0.663 26 H 0.108 0.892 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 -3.625 0.026 3.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.306 5.306 2 C -0.166 4.166 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.418 4.418 8 H 0.114 0.886 9 C 0.162 3.838 10 N -0.168 5.168 11 C 0.038 3.962 12 C -0.007 4.007 13 N -0.364 5.364 14 C -0.380 4.380 15 C 0.168 3.832 16 F -0.134 7.134 17 C -0.387 4.387 18 C 0.287 3.713 19 F -0.188 7.188 20 F -0.188 7.188 21 H 0.091 0.909 22 H 0.103 0.897 23 H 0.045 0.955 24 H 0.147 0.853 25 H 0.149 0.851 26 H 0.126 0.874 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.150 -1.922 0.016 2.240 hybrid contribution 0.491 -1.325 -0.155 1.421 sum -0.659 -3.247 -0.139 3.316 Atomic orbital electron populations 1.70123 1.07258 1.28817 1.24425 1.26203 0.95086 1.01655 0.93680 0.86256 0.80151 0.79473 0.80459 1.18486 1.19863 1.18459 1.19965 0.95185 0.89087 1.37538 0.88646 1.18074 0.87770 0.90301 0.87659 1.68639 1.06295 1.25897 1.16015 1.20832 0.95134 0.88371 0.91870 1.20469 0.90601 0.99648 0.90018 1.58478 1.13836 1.53737 1.10336 1.20971 0.91817 0.98920 1.26309 1.17350 0.90550 0.78607 0.96699 1.91363 1.82385 1.45744 1.93908 1.20764 0.93864 0.94520 1.29557 1.19580 0.90067 0.90623 0.71058 1.92937 1.89874 1.84182 1.51854 1.92938 1.89884 1.84318 1.51666 0.90871 0.89680 0.95493 0.85340 0.85126 0.87381 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.55 11.46 55.55 0.64 -16.92 15 2 C 0.06 1.56 5.50 -17.35 -0.10 1.46 15 3 Si 0.91 18.43 29.56 -169.99 -5.02 13.40 15 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 7 C -0.39 -10.34 8.19 -37.70 -0.31 -10.65 15 8 H 0.10 2.48 5.51 -52.49 -0.29 2.19 15 9 C 0.28 7.64 6.54 -84.99 -0.56 7.09 15 10 N -0.46 -12.07 7.77 -7.39 -0.06 -12.13 15 11 C 0.19 4.40 6.30 -82.59 -0.52 3.88 15 12 C 0.12 2.29 7.09 -4.97 -0.04 2.25 15 13 N -0.83 -14.00 9.61 -11.40 -0.11 -14.11 15 14 C -0.36 -7.81 9.73 -39.06 -0.38 -8.19 15 15 C 0.19 4.43 7.32 -39.14 -0.29 4.14 15 16 F -0.16 -3.21 16.33 2.25 0.04 -3.18 15 17 C -0.38 -9.36 5.44 -103.67 -0.56 -9.93 15 18 C 0.34 7.51 4.92 36.00 0.18 7.68 15 19 F -0.21 -4.69 16.04 2.25 0.04 -4.65 15 20 F -0.21 -4.70 16.05 2.25 0.04 -4.66 15 21 H 0.28 6.46 8.29 -40.82 -0.34 6.12 15 22 H 0.08 1.64 8.14 -51.93 -0.42 1.22 15 23 H 0.03 0.43 8.04 -51.93 -0.42 0.01 15 24 H 0.33 4.43 9.08 -39.29 -0.36 4.07 15 25 H 0.34 5.32 8.99 -39.29 -0.35 4.97 15 26 H 0.11 2.08 8.06 -52.49 -0.42 1.65 15 27 H 0.09 1.73 7.22 -51.93 -0.38 1.36 15 LS Contribution 252.49 15.07 3.81 3.81 Total: -1.00 -28.64 252.49 -4.98 -33.62 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -1.77 Total: 7.07 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.57 Total: -2.25 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.47 Total: -43.15 kcal Atomic # 9 Polarization: -12.60 SS G_CDS: 0.11 Total: -12.49 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.64 -4.98 -33.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238658262.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.654 kcal (2) G-P(sol) polarization free energy of solvation -28.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds