Wall clock time and date at job start Mon Mar 30 2020 03:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99998 * 2 1 4 4 H 1.48502 * 109.47201 * 240.00209 * 3 2 1 5 5 H 1.48507 * 109.46948 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47022 * 120.00046 * 3 2 1 7 7 C 1.40024 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00407 * 179.97438 * 7 2 1 9 9 C 1.41431 * 119.99835 * 0.02562 * 7 2 1 10 10 N 1.33666 * 119.81248 * 359.97438 * 9 7 2 11 11 C 1.31435 * 121.57440 * 179.97438 * 10 9 7 12 12 C 1.50706 * 119.47708 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46577 * 274.99767 * 12 11 10 14 14 C 1.38692 * 121.04653 * 0.25511 * 11 10 9 15 15 C 1.39179 * 119.52188 * 359.49798 * 14 11 10 16 16 F 1.35106 * 120.73192 * 180.24251 * 15 14 11 17 17 C 1.38495 * 118.53701 * 0.48983 * 15 14 11 18 18 C 1.50697 * 120.52509 * 179.73020 * 17 15 14 19 19 F 1.39903 * 109.47149 * 120.02314 * 18 17 15 20 20 F 1.39899 * 109.47407 * 240.02122 * 18 17 15 21 21 H 0.96996 * 120.00219 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47318 * 34.99274 * 12 11 10 23 23 H 1.09000 * 109.47161 * 154.99905 * 12 11 10 24 24 H 1.00900 * 110.99481 * 179.97438 * 13 12 11 25 25 H 1.00896 * 111.00594 * 303.95433 * 13 12 11 26 26 H 1.08002 * 120.23602 * 179.71915 * 14 11 10 27 27 H 1.09002 * 109.47491 * 0.02625 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3005 -2.4375 -0.0016 10 7 -0.0362 -2.4331 -0.0016 11 6 -0.7280 -3.5506 -0.0031 12 6 -2.2339 -3.4906 -0.0025 13 7 -2.7177 -3.3527 1.3777 14 6 -0.0942 -4.7843 0.0005 15 6 1.2964 -4.8409 -0.0048 16 9 1.9390 -6.0293 -0.0063 17 6 2.0070 -3.6521 -0.0032 18 6 3.5139 -3.6611 -0.0026 19 9 3.9846 -3.0027 -1.1437 20 9 3.9838 -3.0061 1.1408 21 1 -0.4850 0.8400 0.0004 22 1 -2.5636 -2.6340 -0.5903 23 1 -2.6342 -4.4061 -0.4381 24 1 -3.7254 -3.3098 1.4050 25 1 -2.3715 -4.1013 1.9588 26 1 -0.6756 -5.6944 0.0038 27 1 3.8712 -4.6909 -0.0041 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238658262.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:47 Heat of formation + Delta-G solvation = -139.714088 kcal Electronic energy + Delta-G solvation = -18024.643340 eV Core-core repulsion = 14559.382085 eV Total energy + Delta-G solvation = -3465.261255 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.02943 -49.64570 -47.71273 -40.26960 -36.24844 -35.11551 -32.68654 -31.97580 -28.53905 -27.54282 -24.72118 -23.62701 -21.95425 -19.81327 -18.72103 -18.01809 -17.96465 -17.58823 -16.84609 -16.77490 -16.56863 -16.33273 -15.35994 -15.07450 -14.87990 -14.67429 -14.29709 -14.14001 -14.02499 -13.68595 -13.37849 -13.06120 -12.81428 -12.69208 -12.46795 -11.99290 -11.56360 -11.26023 -10.09227 -9.81403 -9.74094 -9.44643 -8.46690 -6.75599 0.47087 0.74707 1.37693 1.49576 1.49964 2.17346 2.63841 3.05208 3.30790 3.49016 3.52639 3.77144 4.02744 4.03305 4.28096 4.35728 4.57902 4.70957 4.83331 5.05019 5.19897 5.29921 5.33159 5.90637 6.10163 6.29316 6.47865 6.70097 6.76007 7.98130 8.25874 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.012702 C = 0.007757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.075519 B = 2203.858193 C = 3608.686621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.720 5.720 2 C 0.023 3.977 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.426 4.426 8 H 0.089 0.911 9 C 0.257 3.743 10 N -0.491 5.491 11 C 0.178 3.822 12 C 0.130 3.870 13 N -0.846 5.846 14 C -0.347 4.347 15 C 0.189 3.811 16 F -0.141 7.141 17 C -0.404 4.404 18 C 0.340 3.660 19 F -0.213 7.213 20 F -0.214 7.214 21 H 0.287 0.713 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.355 0.645 25 H 0.343 0.657 26 H 0.141 0.859 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 -4.226 0.106 4.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.202 4.202 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.181 1.181 6 H -0.185 1.185 7 C -0.454 4.454 8 H 0.107 0.893 9 C 0.135 3.865 10 N -0.203 5.203 11 C 0.026 3.974 12 C -0.001 4.001 13 N -0.378 5.378 14 C -0.371 4.371 15 C 0.164 3.836 16 F -0.120 7.120 17 C -0.411 4.411 18 C 0.286 3.714 19 F -0.195 7.195 20 F -0.195 7.195 21 H 0.098 0.902 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.170 0.830 25 H 0.156 0.844 26 H 0.159 0.841 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.612 -2.556 0.099 3.024 hybrid contribution 0.555 -1.302 -0.172 1.426 sum -1.058 -3.858 -0.073 4.001 Atomic orbital electron populations 1.70177 1.08518 1.30043 1.25197 1.27007 0.95896 1.04506 0.92828 0.85251 0.78941 0.75458 0.80209 1.18298 1.18132 1.18459 1.20157 0.95122 0.90297 1.39829 0.89269 1.18487 0.88600 0.91393 0.88014 1.68629 1.06432 1.27792 1.17477 1.21594 0.97250 0.88044 0.90522 1.20417 0.87832 1.00767 0.91056 1.58355 1.15633 1.54352 1.09508 1.21349 0.91735 0.99900 1.24086 1.17436 0.91067 0.78735 0.96394 1.91392 1.82202 1.44634 1.93731 1.21053 0.95383 0.94633 1.30022 1.19851 0.89029 0.91996 0.70545 1.92915 1.89800 1.84554 1.52220 1.92916 1.89819 1.84700 1.52075 0.90193 0.91005 0.92049 0.82970 0.84397 0.84097 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -37.31 11.46 21.84 0.25 -37.06 15 2 C 0.02 1.17 5.50 85.29 0.47 1.64 15 3 Si 0.98 38.00 29.56 68.60 2.03 40.03 15 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 15 5 H -0.26 -9.16 7.11 99.48 0.71 -8.45 15 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 7 C -0.43 -23.10 8.19 23.49 0.19 -22.90 15 8 H 0.09 4.76 5.51 -2.91 -0.02 4.75 15 9 C 0.26 14.06 6.54 40.21 0.26 14.33 15 10 N -0.49 -26.15 7.77 -177.31 -1.38 -27.52 15 11 C 0.18 8.00 6.30 42.73 0.27 8.27 15 12 C 0.13 4.58 7.09 85.56 0.61 5.19 15 13 N -0.85 -26.72 9.61 -189.99 -1.83 -28.55 15 14 C -0.35 -14.47 9.73 22.60 0.22 -14.25 15 15 C 0.19 8.39 7.32 22.56 0.17 8.55 15 16 F -0.14 -5.48 16.33 44.97 0.73 -4.75 15 17 C -0.40 -19.82 5.44 -19.25 -0.10 -19.93 15 18 C 0.34 14.77 4.92 71.24 0.35 15.12 15 19 F -0.21 -9.66 16.04 44.97 0.72 -8.94 15 20 F -0.21 -9.71 16.05 44.97 0.72 -8.99 15 21 H 0.29 13.36 8.29 -92.71 -0.77 12.59 15 22 H 0.07 2.71 8.14 -2.39 -0.02 2.69 15 23 H 0.06 1.74 8.04 -2.39 -0.02 1.72 15 24 H 0.36 8.58 9.08 -89.69 -0.81 7.77 15 25 H 0.34 10.09 8.99 -89.70 -0.81 9.28 15 26 H 0.14 4.87 8.06 -2.91 -0.02 4.85 15 27 H 0.13 4.60 7.22 -2.39 -0.02 4.58 15 Total: -1.00 -61.71 252.49 3.32 -58.39 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -0.36 Total: 21.39 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 2.43 Total: -4.00 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -2.95 Total: -93.13 kcal Atomic # 9 Polarization: -24.86 SS G_CDS: 2.18 Total: -22.68 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -61.71 3.32 -58.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238658262.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.324 kcal (2) G-P(sol) polarization free energy of solvation -61.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds