Wall clock time and date at job start Mon Mar 30 2020 03:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86793 * 119.99776 * 2 1 4 4 H 1.48501 * 109.47213 * 274.98965 * 3 2 1 5 5 H 1.48501 * 109.47233 * 34.98925 * 3 2 1 6 6 H 1.48501 * 109.47168 * 154.98815 * 3 2 1 7 7 C 1.40019 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00136 * 186.40499 * 7 2 1 9 9 C 1.41305 * 119.99859 * 6.13549 * 7 2 1 10 10 N 1.33657 * 119.79497 * 353.03210 * 9 7 2 11 11 C 1.31356 * 121.53518 * 179.71038 * 10 9 7 12 12 C 1.50699 * 119.51720 * 180.29063 * 11 10 9 13 13 F 1.39905 * 109.47436 * 30.27332 * 12 11 10 14 14 F 1.39895 * 109.47313 * 150.27494 * 12 11 10 15 15 C 1.39130 * 120.95845 * 0.56676 * 11 10 9 16 16 F 1.35098 * 120.24992 * 179.69747 * 15 11 10 17 17 C 1.39215 * 119.49556 * 359.71994 * 15 11 10 18 18 C 1.38052 * 118.57164 * 0.02562 * 17 15 11 19 19 C 1.50698 * 120.48481 * 180.02562 * 18 17 15 20 20 N 1.46905 * 109.47182 * 259.97119 * 19 18 17 21 21 H 0.96990 * 120.00266 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46987 * 270.27383 * 12 11 10 23 23 H 1.07994 * 120.71078 * 179.97438 * 17 15 11 24 24 H 1.08997 * 109.47466 * 19.97710 * 19 18 17 25 25 H 1.09000 * 109.46970 * 139.97398 * 19 18 17 26 26 H 1.00895 * 111.00111 * 179.97438 * 20 19 18 27 27 H 1.00899 * 110.99582 * 303.96064 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4957 2.6199 0.8028 6 1 3.5878 1.4121 0.5920 7 6 2.0078 -1.2126 -0.0005 8 1 3.0826 -1.2155 0.1038 9 6 1.3073 -2.4328 -0.1319 10 7 -0.0291 -2.4365 -0.1150 11 6 -0.7147 -3.5500 -0.2399 12 6 -2.2208 -3.5007 -0.2212 13 9 -2.6540 -2.2771 -0.7432 14 9 -2.7313 -4.5461 -0.9981 15 6 -0.0705 -4.7748 -0.3836 16 9 -0.7897 -5.9119 -0.5050 17 6 1.3208 -4.8196 -0.4010 18 6 2.0211 -3.6368 -0.2734 19 6 3.5281 -3.6352 -0.2871 20 7 4.0302 -3.5487 1.0908 21 1 -0.4850 0.8399 0.0004 22 1 -2.5749 -3.6039 0.8045 23 1 1.8410 -5.7595 -0.5111 24 1 3.8882 -4.5549 -0.7480 25 1 3.8853 -2.7784 -0.8584 26 1 5.0390 -3.5464 1.1085 27 1 3.6580 -2.7372 1.5609 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238658634.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:31 Heat of formation + Delta-G solvation = -119.943301 kcal Electronic energy + Delta-G solvation = -17987.137810 eV Core-core repulsion = 14522.733880 eV Total energy + Delta-G solvation = -3464.403930 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.23342 -47.47526 -46.10016 -38.64026 -34.46554 -33.82026 -30.79682 -30.16973 -26.74199 -25.81382 -22.98333 -21.98172 -20.18688 -17.99677 -16.89297 -16.70097 -16.30124 -15.88728 -15.22170 -15.05335 -14.66973 -14.39082 -13.83740 -13.59009 -13.00915 -12.87929 -12.54306 -12.38114 -12.21739 -11.90727 -11.48699 -11.35449 -11.23967 -11.18907 -10.85938 -10.54815 -10.07018 -9.51016 -8.56036 -8.13757 -8.01384 -7.69960 -6.71173 -4.78480 2.16748 2.56238 2.94225 2.96871 2.97851 3.74589 4.33012 4.45880 4.88312 5.15938 5.34007 5.50028 5.51335 5.76572 5.93205 6.05093 6.12422 6.24844 6.45386 6.79316 6.86476 6.98364 7.36645 7.65453 7.69394 7.84973 8.01431 8.31079 8.54944 9.57616 10.02736 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.010634 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.277130 B = 2632.487684 C = 3901.437050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.064 3.936 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.416 4.416 8 H 0.089 0.911 9 C 0.252 3.748 10 N -0.436 5.436 11 C 0.062 3.938 12 C 0.328 3.672 13 F -0.187 7.187 14 F -0.203 7.203 15 C -0.090 4.090 16 F -0.158 7.158 17 C -0.064 4.064 18 C -0.206 4.206 19 C 0.130 3.870 20 N -0.849 5.849 21 H 0.280 0.720 22 H 0.111 0.889 23 H 0.115 0.885 24 H 0.059 0.941 25 H 0.034 0.966 26 H 0.327 0.673 27 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.218 -1.199 0.814 2.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.164 4.164 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.446 4.446 8 H 0.107 0.893 9 C 0.128 3.872 10 N -0.148 5.148 11 C -0.087 4.087 12 C 0.274 3.726 13 F -0.168 7.168 14 F -0.184 7.184 15 C -0.115 4.115 16 F -0.137 7.137 17 C -0.089 4.089 18 C -0.212 4.212 19 C -0.001 4.001 20 N -0.378 5.378 21 H 0.091 0.909 22 H 0.129 0.871 23 H 0.133 0.867 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.138 0.862 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.193 -0.941 0.994 1.816 hybrid contribution 1.010 0.609 -0.560 1.306 sum 2.204 -0.332 0.434 2.271 Atomic orbital electron populations 1.70088 1.07157 1.28708 1.25914 1.26131 0.95038 1.01388 0.93817 0.86244 0.80374 0.80612 0.79319 1.19288 1.19810 1.18468 1.19594 0.94643 0.89202 1.41198 0.89347 1.18370 0.87084 0.91824 0.89970 1.68435 1.07908 1.22880 1.15578 1.21644 0.95050 0.90091 1.01914 1.19959 0.89217 0.71367 0.92101 1.93003 1.90597 1.44340 1.88856 1.92968 1.88285 1.58599 1.78571 1.17920 0.89911 0.81955 1.21745 1.91336 1.77996 1.49159 1.95229 1.20747 0.91402 0.97995 0.98744 1.20334 0.94911 0.93251 1.12675 1.20222 0.91485 0.99269 0.89107 1.58859 1.11701 1.49858 1.17426 0.90880 0.87146 0.86666 0.92284 0.94785 0.86167 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.43 11.49 55.55 0.64 -16.79 15 2 C 0.06 1.49 5.49 -17.34 -0.10 1.39 15 3 Si 0.91 17.10 29.56 -169.99 -5.03 12.08 15 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 6 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 7 C -0.42 -9.90 8.17 -37.75 -0.31 -10.21 15 8 H 0.09 1.91 5.81 -52.49 -0.31 1.61 15 9 C 0.25 6.31 6.54 -84.98 -0.56 5.75 15 10 N -0.44 -11.42 7.48 -7.30 -0.05 -11.47 15 11 C 0.06 1.51 6.59 -82.46 -0.54 0.97 15 12 C 0.33 6.98 5.66 36.01 0.20 7.18 15 13 F -0.19 -4.27 17.06 2.25 0.04 -4.23 15 14 F -0.20 -4.28 15.46 2.25 0.03 -4.24 15 15 C -0.09 -2.11 7.19 -38.89 -0.28 -2.39 15 16 F -0.16 -3.55 15.43 2.25 0.03 -3.52 15 17 C -0.06 -1.41 9.79 -39.29 -0.38 -1.80 15 18 C -0.21 -4.62 5.47 -103.77 -0.57 -5.19 15 19 C 0.13 2.40 6.17 -4.97 -0.03 2.37 15 20 N -0.85 -14.37 9.61 -11.41 -0.11 -14.48 15 21 H 0.28 6.37 8.29 -40.82 -0.34 6.03 15 22 H 0.11 1.97 8.14 -51.93 -0.42 1.55 15 23 H 0.12 2.26 8.06 -52.49 -0.42 1.84 15 24 H 0.06 1.00 8.03 -51.93 -0.42 0.58 15 25 H 0.03 0.63 7.02 -51.93 -0.36 0.26 15 26 H 0.33 4.47 9.08 -39.29 -0.36 4.11 15 27 H 0.35 6.20 7.91 -39.29 -0.31 5.89 15 LS Contribution 250.84 15.07 3.78 3.78 Total: -1.00 -27.65 250.84 -4.96 -32.60 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -1.73 Total: 8.20 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.56 Total: -1.92 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.47 Total: -42.74 kcal Atomic # 9 Polarization: -12.10 SS G_CDS: 0.11 Total: -11.99 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.08 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.65 -4.96 -32.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238658634.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.339 kcal (2) G-P(sol) polarization free energy of solvation -27.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds