Wall clock time and date at job start Mon Mar 30 2020 03:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86793 * 119.99776 * 2 1 4 4 H 1.48501 * 109.47213 * 274.98965 * 3 2 1 5 5 H 1.48501 * 109.47233 * 34.98925 * 3 2 1 6 6 H 1.48501 * 109.47168 * 154.98815 * 3 2 1 7 7 C 1.40019 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00136 * 186.40499 * 7 2 1 9 9 C 1.41305 * 119.99859 * 6.13549 * 7 2 1 10 10 N 1.33657 * 119.79497 * 353.03210 * 9 7 2 11 11 C 1.31356 * 121.53518 * 179.71038 * 10 9 7 12 12 C 1.50699 * 119.51720 * 180.29063 * 11 10 9 13 13 F 1.39905 * 109.47436 * 30.27332 * 12 11 10 14 14 F 1.39895 * 109.47313 * 150.27494 * 12 11 10 15 15 C 1.39130 * 120.95845 * 0.56676 * 11 10 9 16 16 F 1.35098 * 120.24992 * 179.69747 * 15 11 10 17 17 C 1.39215 * 119.49556 * 359.71994 * 15 11 10 18 18 C 1.38052 * 118.57164 * 0.02562 * 17 15 11 19 19 C 1.50698 * 120.48481 * 180.02562 * 18 17 15 20 20 N 1.46905 * 109.47182 * 259.97119 * 19 18 17 21 21 H 0.96990 * 120.00266 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46987 * 270.27383 * 12 11 10 23 23 H 1.07994 * 120.71078 * 179.97438 * 17 15 11 24 24 H 1.08997 * 109.47466 * 19.97710 * 19 18 17 25 25 H 1.09000 * 109.46970 * 139.97398 * 19 18 17 26 26 H 1.00895 * 111.00111 * 179.97438 * 20 19 18 27 27 H 1.00899 * 110.99582 * 303.96064 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4957 2.6199 0.8028 6 1 3.5878 1.4121 0.5920 7 6 2.0078 -1.2126 -0.0005 8 1 3.0826 -1.2155 0.1038 9 6 1.3073 -2.4328 -0.1319 10 7 -0.0291 -2.4365 -0.1150 11 6 -0.7147 -3.5500 -0.2399 12 6 -2.2208 -3.5007 -0.2212 13 9 -2.6540 -2.2771 -0.7432 14 9 -2.7313 -4.5461 -0.9981 15 6 -0.0705 -4.7748 -0.3836 16 9 -0.7897 -5.9119 -0.5050 17 6 1.3208 -4.8196 -0.4010 18 6 2.0211 -3.6368 -0.2734 19 6 3.5281 -3.6352 -0.2871 20 7 4.0302 -3.5487 1.0908 21 1 -0.4850 0.8399 0.0004 22 1 -2.5749 -3.6039 0.8045 23 1 1.8410 -5.7595 -0.5111 24 1 3.8882 -4.5549 -0.7480 25 1 3.8853 -2.7784 -0.8584 26 1 5.0390 -3.5464 1.1085 27 1 3.6580 -2.7372 1.5609 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238658634.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:30 Heat of formation + Delta-G solvation = -138.159695 kcal Electronic energy + Delta-G solvation = -17987.927732 eV Core-core repulsion = 14522.733880 eV Total energy + Delta-G solvation = -3465.193852 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.95836 -49.26259 -47.82961 -40.39669 -36.03307 -35.54845 -32.43849 -31.94230 -28.48992 -27.47638 -24.59442 -23.76435 -21.88574 -19.76345 -18.61114 -18.39727 -18.04962 -17.55534 -16.91275 -16.71068 -16.26345 -16.10980 -15.33668 -15.22096 -14.73454 -14.55420 -14.22873 -14.10347 -13.95621 -13.58497 -13.14377 -12.91386 -12.81980 -12.77793 -12.56059 -12.13753 -11.72634 -11.21821 -10.30371 -9.81488 -9.66745 -9.35104 -8.44660 -6.59853 0.38756 0.80097 1.42048 1.48400 1.55762 2.17917 2.59436 2.78222 3.21880 3.48936 3.60353 3.80893 4.02660 4.12562 4.26813 4.44270 4.53700 4.72547 4.76000 5.10822 5.14777 5.23252 5.64106 5.90116 6.08052 6.31024 6.54942 6.71845 6.80935 7.78381 8.32140 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.010634 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.277130 B = 2632.487684 C = 3901.437050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.021 3.979 3 Si 0.987 3.013 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.246 1.246 7 C -0.431 4.431 8 H 0.106 0.894 9 C 0.220 3.780 10 N -0.469 5.469 11 C 0.039 3.961 12 C 0.328 3.672 13 F -0.199 7.199 14 F -0.203 7.203 15 C -0.101 4.101 16 F -0.155 7.155 17 C -0.072 4.072 18 C -0.206 4.206 19 C 0.134 3.866 20 N -0.849 5.849 21 H 0.283 0.717 22 H 0.147 0.853 23 H 0.141 0.859 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.348 0.652 27 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.792 -1.029 1.076 4.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.203 4.203 3 Si 0.807 3.193 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.461 4.461 8 H 0.124 0.876 9 C 0.096 3.904 10 N -0.182 5.182 11 C -0.109 4.109 12 C 0.273 3.727 13 F -0.180 7.180 14 F -0.184 7.184 15 C -0.127 4.127 16 F -0.135 7.135 17 C -0.096 4.096 18 C -0.211 4.211 19 C 0.004 3.996 20 N -0.380 5.380 21 H 0.094 0.906 22 H 0.164 0.836 23 H 0.159 0.841 24 H 0.097 0.903 25 H 0.053 0.947 26 H 0.162 0.838 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.781 -0.808 1.259 3.158 hybrid contribution 0.538 0.480 -0.648 0.969 sum 3.318 -0.328 0.611 3.390 Atomic orbital electron populations 1.70202 1.08975 1.29807 1.27082 1.27070 0.95680 1.04827 0.92744 0.85106 0.79409 0.75730 0.79075 1.19388 1.19660 1.16926 1.19997 0.95551 0.89405 1.41152 0.87631 1.18904 0.87356 0.93420 0.90766 1.68426 1.08844 1.23845 1.17063 1.22074 0.96451 0.90188 1.02157 1.20232 0.88068 0.70798 0.93563 1.92971 1.90580 1.45261 1.89199 1.92960 1.88113 1.58499 1.78848 1.18112 0.90672 0.81923 1.21960 1.91333 1.78041 1.48846 1.95234 1.21069 0.91095 0.99122 0.98348 1.20736 0.97043 0.92430 1.10913 1.20202 0.88958 1.00371 0.90086 1.58777 1.13377 1.49570 1.16274 0.90603 0.83576 0.84111 0.90273 0.94658 0.83802 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.34 11.49 21.84 0.25 -37.09 15 2 C 0.02 0.96 5.49 85.28 0.47 1.43 15 3 Si 0.99 34.31 29.56 68.60 2.03 36.34 15 4 H -0.27 -9.33 7.11 99.48 0.71 -8.62 15 5 H -0.27 -9.30 7.11 99.48 0.71 -8.59 15 6 H -0.25 -7.90 7.11 99.48 0.71 -7.19 15 7 C -0.43 -20.27 8.17 23.46 0.19 -20.08 15 8 H 0.11 4.41 5.81 -2.91 -0.02 4.39 15 9 C 0.22 11.02 6.54 40.22 0.26 11.28 15 10 N -0.47 -24.85 7.48 -177.01 -1.32 -26.18 15 11 C 0.04 1.92 6.59 42.84 0.28 2.20 15 12 C 0.33 13.89 5.66 71.24 0.40 14.29 15 13 F -0.20 -9.20 17.06 44.97 0.77 -8.43 15 14 F -0.20 -8.47 15.46 44.97 0.70 -7.77 15 15 C -0.10 -4.69 7.19 22.72 0.16 -4.53 15 16 F -0.16 -6.86 15.43 44.97 0.69 -6.17 15 17 C -0.07 -3.09 9.79 22.46 0.22 -2.87 15 18 C -0.21 -9.00 5.47 -19.31 -0.11 -9.11 15 19 C 0.13 4.67 6.17 85.56 0.53 5.20 15 20 N -0.85 -26.64 9.61 -190.00 -1.83 -28.47 15 21 H 0.28 13.08 8.29 -92.72 -0.77 12.31 15 22 H 0.15 5.10 8.14 -2.39 -0.02 5.08 15 23 H 0.14 5.20 8.06 -2.91 -0.02 5.18 15 24 H 0.08 2.43 8.03 -2.39 -0.02 2.41 15 25 H 0.04 1.22 7.02 -2.39 -0.02 1.20 15 26 H 0.35 8.45 9.08 -89.70 -0.81 7.63 15 27 H 0.34 11.57 7.91 -89.69 -0.71 10.86 15 Total: -1.00 -58.72 250.84 3.43 -55.29 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -0.27 Total: 24.67 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 2.41 Total: -2.19 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -2.90 Total: -91.74 kcal Atomic # 9 Polarization: -24.53 SS G_CDS: 2.16 Total: -22.38 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 2.03 Total: 36.34 kcal Total: -58.72 3.43 -55.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238658634.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.869 kcal (2) G-P(sol) polarization free energy of solvation -58.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds