Wall clock time and date at job start Mon Mar 30 2020 03:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86799 * 119.99944 * 2 1 4 4 H 1.48506 * 109.46695 * 275.26894 * 3 2 1 5 5 H 1.48501 * 109.47408 * 35.26388 * 3 2 1 6 6 H 1.48494 * 109.47086 * 155.26799 * 3 2 1 7 7 C 1.39934 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00173 * 340.88707 * 7 2 1 9 9 C 1.41332 * 119.99931 * 160.88461 * 7 2 1 10 10 C 1.41412 * 120.68271 * 316.60306 * 9 7 2 11 11 F 1.35102 * 120.93458 * 0.03910 * 10 9 7 12 12 C 1.38394 * 118.12924 * 179.77370 * 10 9 7 13 13 C 1.38423 * 119.38748 * 0.50926 * 12 10 9 14 14 C 1.50703 * 119.31557 * 179.74999 * 13 12 10 15 15 N 1.46902 * 109.47177 * 94.72582 * 14 13 12 16 16 N 1.32122 * 121.36848 * 359.47180 * 13 12 10 17 17 C 1.31502 * 122.05998 * 0.25575 * 16 13 12 18 18 C 1.50692 * 119.78947 * 180.02562 * 17 16 13 19 19 F 1.39903 * 109.47499 * 119.99881 * 18 17 16 20 20 F 1.39902 * 109.47206 * 239.99669 * 18 17 16 21 21 H 0.96999 * 120.00037 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.30985 * 180.25982 * 12 10 9 23 23 H 1.09001 * 109.46983 * 214.72785 * 14 13 12 24 24 H 1.09001 * 109.47271 * 334.72731 * 14 13 12 25 25 H 1.00903 * 111.00144 * 180.02562 * 15 14 13 26 26 H 1.00902 * 110.99947 * 303.95301 * 15 14 13 27 27 H 1.08997 * 109.47402 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3786 2.1106 -1.3942 5 1 1.5000 2.6181 0.8083 6 1 3.5912 1.4106 0.5857 7 6 2.0081 -1.2119 0.0005 8 1 1.5128 -2.1212 0.3072 9 6 3.3630 -1.2458 -0.4003 10 6 3.7967 -0.5289 -1.5394 11 9 2.9290 0.2048 -2.2702 12 6 5.1361 -0.5955 -1.8813 13 6 5.9960 -1.3611 -1.1130 14 6 7.4531 -1.4370 -1.4901 15 7 8.2093 -0.4351 -0.7270 16 7 5.5670 -2.0223 -0.0526 17 6 4.3078 -1.9937 0.3254 18 6 3.8742 -2.7671 1.5439 19 9 3.3384 -1.8860 2.4893 20 9 2.9036 -3.7063 1.1792 21 1 -0.4850 0.8400 -0.0004 22 1 5.5062 -0.0584 -2.7421 23 1 7.8359 -2.4319 -1.2627 24 1 7.5632 -1.2404 -2.5566 25 1 9.1900 -0.4657 -0.9625 26 1 7.8319 0.4895 -0.8708 27 1 4.7343 -3.2809 1.9733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238658989.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:50 Heat of formation + Delta-G solvation = -118.144441 kcal Electronic energy + Delta-G solvation = -18186.939301 eV Core-core repulsion = 14722.613376 eV Total energy + Delta-G solvation = -3464.325925 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.02815 -47.99201 -46.00112 -38.92808 -34.80356 -33.67315 -31.21527 -30.96038 -26.97896 -25.91178 -23.32674 -21.54466 -20.70680 -18.13634 -16.99736 -16.82851 -16.29043 -15.75128 -15.67676 -15.35833 -14.75453 -14.50495 -14.11555 -13.91197 -13.30317 -12.97642 -12.82093 -12.50578 -12.39690 -12.22826 -11.93231 -11.58578 -11.31288 -11.06659 -10.77359 -10.35940 -9.82901 -9.42867 -8.72699 -8.56986 -8.43624 -8.00878 -7.17534 -4.81351 1.84090 2.15175 3.04707 3.06597 3.16834 3.83837 4.14424 4.45849 4.74053 4.95135 4.99879 5.16312 5.32099 5.59561 5.74957 5.80545 5.97510 6.04485 6.28153 6.51460 6.66058 6.90878 7.05522 7.31238 7.46866 7.66162 8.02065 8.09137 8.40770 8.95044 9.80757 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.012534 C = 0.009123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.889261 B = 2233.362436 C = 3068.299475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.092 3.908 3 Si 0.904 3.096 4 H -0.256 1.256 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.425 4.425 8 H 0.113 0.887 9 C 0.043 3.957 10 C 0.013 3.987 11 F -0.135 7.135 12 C -0.140 4.140 13 C 0.012 3.988 14 C 0.138 3.862 15 N -0.843 5.843 16 N -0.416 5.416 17 C -0.039 4.039 18 C 0.351 3.649 19 F -0.197 7.197 20 F -0.204 7.204 21 H 0.291 0.709 22 H 0.119 0.881 23 H 0.079 0.921 24 H 0.030 0.970 25 H 0.334 0.666 26 H 0.338 0.662 27 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.531 0.313 -1.542 8.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.181 1.181 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.452 4.452 8 H 0.131 0.869 9 C 0.036 3.964 10 C -0.014 4.014 11 F -0.114 7.114 12 C -0.162 4.162 13 C -0.127 4.127 14 C 0.007 3.993 15 N -0.373 5.373 16 N -0.125 5.125 17 C -0.183 4.183 18 C 0.296 3.704 19 F -0.178 7.178 20 F -0.185 7.185 21 H 0.102 0.898 22 H 0.137 0.863 23 H 0.097 0.903 24 H 0.048 0.952 25 H 0.146 0.854 26 H 0.150 0.850 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.520 -0.468 -0.438 8.544 hybrid contribution -0.548 1.858 -1.644 2.541 sum 7.972 1.390 -2.082 8.356 Atomic orbital electron populations 1.69667 1.08194 1.30988 1.31080 1.26152 0.94842 1.01766 0.90384 0.86511 0.81358 0.79903 0.79375 1.18081 1.20946 1.17307 1.19537 0.92245 0.97281 1.36151 0.86893 1.18298 0.95035 0.92328 0.90715 1.18104 0.87441 1.02480 0.93332 1.91280 1.69351 1.74711 1.76021 1.21506 0.92458 1.00858 1.01337 1.19796 0.94664 1.02454 0.95766 1.20229 0.89103 0.96556 0.93413 1.58676 1.05910 1.09088 1.63661 1.66313 1.15952 1.16905 1.13301 1.21185 0.89018 1.08693 0.99426 1.19526 0.85925 0.80304 0.84621 1.92971 1.88428 1.70925 1.65486 1.92946 1.67217 1.65741 1.92585 0.89788 0.86322 0.90301 0.95212 0.85359 0.84960 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.42 13.93 55.55 0.77 -19.65 15 2 C 0.09 2.41 5.03 -17.34 -0.09 2.32 15 3 Si 0.90 21.15 24.71 -169.99 -4.20 16.94 15 4 H -0.26 -5.88 6.27 56.52 0.35 -5.52 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 6 H -0.25 -6.05 7.11 56.52 0.40 -5.65 15 7 C -0.43 -11.40 7.91 -37.77 -0.30 -11.70 15 8 H 0.11 3.19 6.74 -52.49 -0.35 2.84 15 9 C 0.04 1.07 4.67 -106.60 -0.50 0.58 15 10 C 0.01 0.31 5.74 -38.32 -0.22 0.09 15 11 F -0.13 -3.27 13.04 2.25 0.03 -3.25 15 12 C -0.14 -2.88 9.68 -39.46 -0.38 -3.26 15 13 C 0.01 0.24 6.30 -82.40 -0.52 -0.28 15 14 C 0.14 2.12 7.08 -4.97 -0.04 2.08 15 15 N -0.84 -11.84 9.61 -11.40 -0.11 -11.95 15 16 N -0.42 -9.15 10.13 -5.13 -0.05 -9.20 15 17 C -0.04 -0.92 6.34 -81.82 -0.52 -1.44 15 18 C 0.35 7.42 5.13 36.00 0.18 7.61 15 19 F -0.20 -4.44 16.57 2.25 0.04 -4.40 15 20 F -0.20 -4.47 15.79 2.25 0.04 -4.44 15 21 H 0.29 6.89 8.30 -40.82 -0.34 6.55 15 22 H 0.12 2.05 8.06 -52.49 -0.42 1.62 15 23 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.03 0.39 8.04 -51.93 -0.42 -0.02 15 25 H 0.33 3.59 9.08 -39.29 -0.36 3.23 15 26 H 0.34 4.62 8.99 -39.29 -0.35 4.27 15 27 H 0.11 1.90 8.11 -51.93 -0.42 1.48 15 LS Contribution 247.60 15.07 3.73 3.73 Total: -1.00 -28.44 247.60 -4.06 -32.50 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -1.93 Total: 3.71 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -2.37 Total: -4.01 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.61 Total: -40.80 kcal Atomic # 9 Polarization: -12.18 SS G_CDS: 0.10 Total: -12.08 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.20 Total: 16.94 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.44 -4.06 -32.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238658989.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.642 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds