Wall clock time and date at job start Mon Mar 30 2020 03:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86799 * 119.99944 * 2 1 4 4 H 1.48506 * 109.46695 * 275.26894 * 3 2 1 5 5 H 1.48501 * 109.47408 * 35.26388 * 3 2 1 6 6 H 1.48494 * 109.47086 * 155.26799 * 3 2 1 7 7 C 1.39934 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00173 * 340.88707 * 7 2 1 9 9 C 1.41332 * 119.99931 * 160.88461 * 7 2 1 10 10 C 1.41412 * 120.68271 * 316.60306 * 9 7 2 11 11 F 1.35102 * 120.93458 * 0.03910 * 10 9 7 12 12 C 1.38394 * 118.12924 * 179.77370 * 10 9 7 13 13 C 1.38423 * 119.38748 * 0.50926 * 12 10 9 14 14 C 1.50703 * 119.31557 * 179.74999 * 13 12 10 15 15 N 1.46902 * 109.47177 * 94.72582 * 14 13 12 16 16 N 1.32122 * 121.36848 * 359.47180 * 13 12 10 17 17 C 1.31502 * 122.05998 * 0.25575 * 16 13 12 18 18 C 1.50692 * 119.78947 * 180.02562 * 17 16 13 19 19 F 1.39903 * 109.47499 * 119.99881 * 18 17 16 20 20 F 1.39902 * 109.47206 * 239.99669 * 18 17 16 21 21 H 0.96999 * 120.00037 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.30985 * 180.25982 * 12 10 9 23 23 H 1.09001 * 109.46983 * 214.72785 * 14 13 12 24 24 H 1.09001 * 109.47271 * 334.72731 * 14 13 12 25 25 H 1.00903 * 111.00144 * 180.02562 * 15 14 13 26 26 H 1.00902 * 110.99947 * 303.95301 * 15 14 13 27 27 H 1.08997 * 109.47402 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3786 2.1106 -1.3942 5 1 1.5000 2.6181 0.8083 6 1 3.5912 1.4106 0.5857 7 6 2.0081 -1.2119 0.0005 8 1 1.5128 -2.1212 0.3072 9 6 3.3630 -1.2458 -0.4003 10 6 3.7967 -0.5289 -1.5394 11 9 2.9290 0.2048 -2.2702 12 6 5.1361 -0.5955 -1.8813 13 6 5.9960 -1.3611 -1.1130 14 6 7.4531 -1.4370 -1.4901 15 7 8.2093 -0.4351 -0.7270 16 7 5.5670 -2.0223 -0.0526 17 6 4.3078 -1.9937 0.3254 18 6 3.8742 -2.7671 1.5439 19 9 3.3384 -1.8860 2.4893 20 9 2.9036 -3.7063 1.1792 21 1 -0.4850 0.8400 -0.0004 22 1 5.5062 -0.0584 -2.7421 23 1 7.8359 -2.4319 -1.2627 24 1 7.5632 -1.2404 -2.5566 25 1 9.1900 -0.4657 -0.9625 26 1 7.8319 0.4895 -0.8708 27 1 4.7343 -3.2809 1.9733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238658989.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:50 Heat of formation + Delta-G solvation = -139.469977 kcal Electronic energy + Delta-G solvation = -18187.864046 eV Core-core repulsion = 14722.613376 eV Total energy + Delta-G solvation = -3465.250670 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.87548 -49.74229 -47.74772 -40.67799 -36.37426 -35.29247 -33.01623 -32.59142 -28.72708 -27.46484 -24.98633 -23.29767 -22.35294 -20.03267 -18.74276 -18.47802 -18.03355 -17.53728 -17.38897 -16.77840 -16.54278 -16.24300 -15.63572 -15.43516 -15.10513 -14.61332 -14.40701 -14.25289 -14.15094 -13.99365 -13.65655 -13.17917 -12.94019 -12.88997 -12.53930 -12.15058 -11.59941 -11.29513 -10.49215 -10.29860 -9.87308 -9.48772 -9.06304 -6.76136 0.06930 0.32988 1.16848 1.22974 1.30218 1.97079 2.36046 2.79301 2.91775 3.30380 3.35821 3.70530 3.99100 4.09492 4.15349 4.31244 4.37299 4.56713 4.71074 4.74789 5.01113 5.16423 5.29427 5.65502 6.03412 6.21734 6.27952 6.49121 6.72781 7.18095 7.99389 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.012534 C = 0.009123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.889261 B = 2233.362436 C = 3068.299475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.062 3.938 3 Si 0.945 3.055 4 H -0.249 1.249 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.467 4.467 8 H 0.080 0.920 9 C 0.024 3.976 10 C -0.003 4.003 11 F -0.141 7.141 12 C -0.135 4.135 13 C 0.034 3.966 14 C 0.139 3.861 15 N -0.853 5.853 16 N -0.424 5.424 17 C -0.047 4.047 18 C 0.345 3.655 19 F -0.208 7.208 20 F -0.212 7.212 21 H 0.299 0.701 22 H 0.161 0.839 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.357 0.643 26 H 0.342 0.658 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.813 0.881 -2.499 12.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.157 4.157 3 Si 0.767 3.233 4 H -0.173 1.173 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.495 4.495 8 H 0.098 0.902 9 C 0.019 3.981 10 C -0.030 4.030 11 F -0.120 7.120 12 C -0.156 4.156 13 C -0.106 4.106 14 C 0.009 3.991 15 N -0.386 5.386 16 N -0.133 5.133 17 C -0.189 4.189 18 C 0.291 3.709 19 F -0.189 7.189 20 F -0.194 7.194 21 H 0.109 0.891 22 H 0.179 0.821 23 H 0.104 0.896 24 H 0.082 0.918 25 H 0.172 0.828 26 H 0.155 0.845 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.808 0.094 -1.386 11.889 hybrid contribution -1.223 1.577 -1.438 2.459 sum 10.585 1.670 -2.824 11.082 Atomic orbital electron populations 1.69682 1.08958 1.31879 1.34026 1.26656 0.95346 1.03587 0.90069 0.85914 0.79782 0.77900 0.79735 1.17308 1.19195 1.18751 1.19308 0.93531 0.96697 1.39984 0.90242 1.18533 0.94907 0.93341 0.91351 1.18482 0.88815 1.02500 0.93166 1.91261 1.69883 1.74840 1.76022 1.21976 0.90844 1.00398 1.02342 1.20860 0.97128 0.99036 0.93583 1.20320 0.85765 0.97586 0.95468 1.58546 1.07357 1.08954 1.63759 1.66521 1.14847 1.17706 1.14220 1.21591 0.89418 1.08047 0.99871 1.19974 0.86695 0.80131 0.84079 1.92943 1.88746 1.71501 1.65746 1.92925 1.67857 1.65876 1.92698 0.89051 0.82139 0.89600 0.91819 0.82832 0.84540 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.00 13.93 21.83 0.30 -44.70 15 2 C 0.06 3.36 5.03 85.25 0.43 3.79 15 3 Si 0.94 43.62 24.71 68.60 1.70 45.31 15 4 H -0.25 -11.03 6.27 99.48 0.62 -10.41 15 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 6 H -0.26 -12.54 7.11 99.48 0.71 -11.84 15 7 C -0.47 -26.07 7.91 23.44 0.19 -25.88 15 8 H 0.08 4.81 6.74 -2.91 -0.02 4.79 15 9 C 0.02 1.24 4.67 -21.14 -0.10 1.14 15 10 C 0.00 -0.13 5.74 23.09 0.13 0.01 15 11 F -0.14 -6.73 13.04 44.97 0.59 -6.15 15 12 C -0.13 -5.02 9.68 22.35 0.22 -4.80 15 13 C 0.03 1.22 6.30 42.56 0.27 1.49 15 14 C 0.14 3.53 7.08 85.56 0.61 4.14 15 15 N -0.85 -19.70 9.61 -190.00 -1.83 -21.53 15 16 N -0.42 -17.44 10.13 -170.13 -1.72 -19.17 15 17 C -0.05 -2.18 6.34 43.20 0.27 -1.90 15 18 C 0.35 14.47 5.13 71.23 0.37 14.83 15 19 F -0.21 -9.49 16.57 44.97 0.75 -8.74 15 20 F -0.21 -9.50 15.79 44.97 0.71 -8.79 15 21 H 0.30 14.66 8.30 -92.71 -0.77 13.89 15 22 H 0.16 4.63 8.06 -2.91 -0.02 4.61 15 23 H 0.09 2.14 8.14 -2.39 -0.02 2.12 15 24 H 0.06 1.26 8.04 -2.39 -0.02 1.24 15 25 H 0.36 5.82 9.08 -89.69 -0.81 5.01 15 26 H 0.34 7.67 8.99 -89.69 -0.81 6.86 15 27 H 0.15 4.99 8.11 -2.39 -0.02 4.97 15 Total: -1.00 -62.82 247.60 2.42 -60.41 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -0.45 Total: 10.56 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 2.38 Total: -7.20 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -3.25 Total: -85.39 kcal Atomic # 9 Polarization: -25.73 SS G_CDS: 2.04 Total: -23.69 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.70 Total: 45.31 kcal Total: -62.82 2.42 -60.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238658989.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.064 kcal (2) G-P(sol) polarization free energy of solvation -62.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds