Wall clock time and date at job start Mon Mar 30 2020 03:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86789 * 120.00161 * 2 1 4 4 H 1.48498 * 109.47488 * 270.00237 * 3 2 1 5 5 H 1.48502 * 109.47367 * 30.00016 * 3 2 1 6 6 H 1.48502 * 109.47429 * 149.99979 * 3 2 1 7 7 C 1.39915 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00019 * 161.16470 * 7 2 1 9 9 C 1.41357 * 120.00084 * 341.16730 * 7 2 1 10 10 C 1.41163 * 120.62603 * 130.47664 * 9 7 2 11 11 C 1.50700 * 120.82898 * 359.74209 * 10 9 7 12 12 N 1.46903 * 109.46902 * 80.00268 * 11 10 9 13 13 C 1.36853 * 118.34826 * 179.72640 * 10 9 7 14 14 C 1.39003 * 119.53193 * 359.97438 * 13 10 9 15 15 F 1.35100 * 119.36790 * 179.97438 * 14 13 10 16 16 N 1.32289 * 121.26487 * 0.02562 * 14 13 10 17 17 C 1.31549 * 121.79953 * 359.97438 * 16 14 13 18 18 C 1.50703 * 119.84835 * 180.02562 * 17 16 14 19 19 F 1.39899 * 109.46817 * 20.24774 * 18 17 16 20 20 F 1.39896 * 109.47040 * 140.25132 * 18 17 16 21 21 H 0.97004 * 119.99852 * 358.21535 * 1 2 3 22 22 H 1.08996 * 109.47656 * 200.00423 * 11 10 9 23 23 H 1.09004 * 109.47166 * 320.00523 * 11 10 9 24 24 H 1.00901 * 110.99737 * 179.97438 * 12 11 10 25 25 H 1.00895 * 111.00375 * 303.95566 * 12 11 10 26 26 H 1.07998 * 120.23885 * 180.02562 * 13 10 9 27 27 H 1.09002 * 109.46886 * 260.25358 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.4901 2.0464 -1.4000 5 1 1.4401 2.6526 0.7000 6 1 3.5401 1.4401 0.7000 7 6 2.0081 -1.2117 -0.0005 8 1 3.0447 -1.2367 -0.3025 9 6 1.3580 -2.4033 0.3941 10 6 1.4336 -3.5630 -0.4072 11 6 2.2027 -3.5576 -1.7031 12 7 3.6363 -3.7123 -1.4223 13 6 0.7913 -4.6926 0.0223 14 6 0.0903 -4.6678 1.2224 15 9 -0.5430 -5.7847 1.6429 16 7 0.0306 -3.5714 1.9601 17 6 0.6287 -2.4576 1.5963 18 6 0.5323 -1.2342 2.4709 19 9 0.1853 -1.6168 3.7711 20 9 1.7674 -0.5776 2.4920 21 1 -0.4850 0.8397 0.0262 22 1 1.8642 -4.3824 -2.3301 23 1 2.0339 -2.6139 -2.2219 24 1 4.1741 -3.7121 -2.2761 25 1 3.9604 -2.9957 -0.7903 26 1 0.8294 -5.5971 -0.5666 27 1 -0.2294 -0.5630 2.0742 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238661200.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:35 Heat of formation + Delta-G solvation = -116.922042 kcal Electronic energy + Delta-G solvation = -18331.687945 eV Core-core repulsion = 14867.415027 eV Total energy + Delta-G solvation = -3464.272918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.87624 -47.82843 -45.88802 -38.94525 -34.76075 -34.03309 -30.98725 -30.32688 -26.80628 -25.34843 -23.89667 -21.67947 -20.22716 -17.86826 -16.91013 -16.66313 -16.39093 -15.64376 -15.36065 -15.04473 -14.89642 -14.63259 -14.05701 -13.85725 -12.98462 -12.74431 -12.65834 -12.32657 -12.16965 -11.90025 -11.74829 -11.47835 -11.29725 -11.05035 -10.95826 -10.54689 -10.24708 -9.26394 -8.79647 -8.55768 -8.15410 -7.59780 -7.09292 -4.84857 2.06431 2.27725 2.92522 2.98225 3.05699 3.77454 4.23961 4.50639 4.79381 5.04532 5.29169 5.31702 5.54044 5.93440 5.97997 6.09435 6.13358 6.30089 6.36872 6.69116 6.80498 7.05046 7.26102 7.55382 7.57542 7.90545 7.94912 8.15850 8.46726 8.87080 9.87883 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.020563 B = 0.012382 C = 0.008687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.362425 B = 2260.841702 C = 3222.395693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.080 3.920 3 Si 0.911 3.089 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.457 4.457 8 H 0.089 0.911 9 C 0.101 3.899 10 C -0.103 4.103 11 C 0.124 3.876 12 N -0.848 5.848 13 C -0.133 4.133 14 C 0.184 3.816 15 F -0.141 7.141 16 N -0.470 5.470 17 C 0.016 3.984 18 C 0.338 3.662 19 F -0.213 7.213 20 F -0.190 7.190 21 H 0.288 0.712 22 H 0.064 0.936 23 H 0.046 0.954 24 H 0.331 0.669 25 H 0.346 0.654 26 H 0.122 0.878 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 0.559 -2.770 3.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.487 4.487 8 H 0.107 0.893 9 C 0.096 3.904 10 C -0.111 4.111 11 C -0.006 4.006 12 N -0.378 5.378 13 C -0.155 4.155 14 C 0.029 3.971 15 F -0.120 7.120 16 N -0.183 5.183 17 C -0.126 4.126 18 C 0.284 3.716 19 F -0.194 7.194 20 F -0.172 7.172 21 H 0.099 0.901 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.143 0.857 25 H 0.159 0.841 26 H 0.140 0.860 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.810 -0.064 -1.687 2.475 hybrid contribution 0.623 1.455 -1.012 1.879 sum 2.433 1.391 -2.699 3.891 Atomic orbital electron populations 1.69789 1.07585 1.30433 1.35611 1.25814 0.94769 1.01314 0.91764 0.86251 0.81261 0.80122 0.78904 1.19834 1.19701 1.17920 1.19164 0.98491 0.90384 1.40636 0.89319 1.17937 0.89979 0.93143 0.89368 1.19907 1.00910 0.93736 0.96519 1.20309 0.87169 0.99819 0.93293 1.58874 1.03595 1.56705 1.18602 1.21012 0.99504 0.99172 0.95838 1.17499 1.02466 0.83040 0.94050 1.91448 1.81189 1.48445 1.90959 1.65972 1.19283 0.98829 1.34226 1.21221 1.04637 0.91388 0.95387 1.20092 0.83607 0.90773 0.77159 1.92901 1.92256 1.92818 1.41470 1.92899 1.46282 1.81703 1.96267 0.90116 0.91796 0.93621 0.85724 0.84060 0.86037 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -18.64 10.83 55.55 0.60 -18.04 15 2 C 0.08 1.78 3.31 -17.34 -0.06 1.72 15 3 Si 0.91 17.49 28.99 -169.99 -4.93 12.56 15 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 7 C -0.46 -10.44 6.23 -37.77 -0.24 -10.67 15 8 H 0.09 1.91 6.65 -52.49 -0.35 1.57 15 9 C 0.10 2.40 5.15 -106.67 -0.55 1.85 15 10 C -0.10 -2.22 5.45 -104.01 -0.57 -2.79 15 11 C 0.12 2.23 6.44 -4.97 -0.03 2.19 15 12 N -0.85 -13.73 9.61 -11.41 -0.11 -13.84 15 13 C -0.13 -2.85 9.66 -39.80 -0.38 -3.24 15 14 C 0.18 4.36 8.41 -17.07 -0.14 4.21 15 15 F -0.14 -3.15 17.28 2.25 0.04 -3.11 15 16 N -0.47 -11.97 9.86 -9.09 -0.09 -12.06 15 17 C 0.02 0.39 6.32 -81.78 -0.52 -0.12 15 18 C 0.34 7.96 4.48 36.01 0.16 8.12 15 19 F -0.21 -5.01 16.97 2.25 0.04 -4.98 15 20 F -0.19 -4.43 13.76 2.25 0.03 -4.40 15 21 H 0.29 6.09 8.30 -40.82 -0.34 5.75 15 22 H 0.06 1.03 8.04 -51.93 -0.42 0.62 15 23 H 0.05 0.85 7.59 -51.93 -0.39 0.45 15 24 H 0.33 4.32 9.08 -39.29 -0.36 3.96 15 25 H 0.35 5.87 7.54 -39.29 -0.30 5.58 15 26 H 0.12 2.24 8.06 -52.49 -0.42 1.81 15 27 H 0.12 2.84 6.18 -51.93 -0.32 2.52 15 LS Contribution 245.51 15.07 3.70 3.70 Total: -1.00 -25.95 245.51 -4.73 -30.68 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -1.69 Total: 8.20 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.32 Total: 1.28 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.40 Total: -43.94 kcal Atomic # 9 Polarization: -12.59 SS G_CDS: 0.11 Total: -12.48 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -4.93 Total: 12.56 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -25.95 -4.73 -30.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238661200.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.243 kcal (2) G-P(sol) polarization free energy of solvation -25.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds