Wall clock time and date at job start Mon Mar 30 2020 03:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86802 * 120.00417 * 2 1 4 4 H 1.48495 * 109.47497 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47371 * 300.00247 * 3 2 1 6 6 H 1.48510 * 109.46785 * 60.00024 * 3 2 1 7 7 C 1.40038 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00332 * 180.02562 * 7 2 1 9 9 C 1.41376 * 119.99470 * 359.97438 * 7 2 1 10 10 N 1.33682 * 119.81209 * 7.01174 * 9 7 2 11 11 C 1.31573 * 121.48071 * 179.97438 * 10 9 7 12 12 F 1.35099 * 119.53103 * 180.02562 * 11 10 9 13 13 C 1.39176 * 120.94177 * 359.97438 * 11 10 9 14 14 C 1.38793 * 119.53429 * 0.02562 * 13 11 10 15 15 C 1.50695 * 120.68748 * 180.25547 * 14 13 11 16 16 N 1.46905 * 109.47209 * 257.89144 * 15 14 13 17 17 C 1.38267 * 118.62324 * 359.97438 * 14 13 11 18 18 C 1.50694 * 120.47829 * 180.02562 * 17 14 13 19 19 F 1.39898 * 109.47355 * 118.15479 * 18 17 14 20 20 F 1.39897 * 109.47101 * 238.15381 * 18 17 14 21 21 H 0.96996 * 119.99676 * 0.02562 * 1 2 3 22 22 H 1.08010 * 120.23021 * 179.97438 * 13 11 10 23 23 H 1.08992 * 109.47767 * 17.88788 * 15 14 13 24 24 H 1.09004 * 109.47695 * 137.89387 * 15 14 13 25 25 H 1.00900 * 111.00648 * 174.48975 * 16 15 14 26 26 H 1.00907 * 110.99593 * 298.44551 * 16 15 14 27 27 H 1.09003 * 109.47370 * 358.15140 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8828 2.3965 -1.2125 6 1 1.8827 2.3964 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2128 -0.0001 9 6 1.3006 -2.4371 -0.0005 10 7 -0.0287 -2.4369 -0.1416 11 6 -0.7192 -3.5569 -0.1468 12 9 -2.0616 -3.5109 -0.2925 13 6 -0.0865 -4.7884 -0.0053 14 6 1.2926 -4.8358 0.1440 15 6 2.0051 -6.1553 0.2934 16 7 2.3478 -6.3695 1.7058 17 6 1.9998 -3.6477 0.1467 18 6 3.4984 -3.6506 0.3054 19 9 4.0893 -3.1002 -0.8370 20 9 3.8502 -2.8894 1.4251 21 1 -0.4849 0.8400 -0.0004 22 1 -0.6646 -5.7006 -0.0107 23 1 1.3547 -6.9602 -0.0486 24 1 2.9166 -6.1459 -0.3042 25 1 2.7457 -7.2860 1.8464 26 1 2.9711 -5.6496 2.0398 27 1 3.8478 -4.6745 0.4378 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238661778.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:38 Heat of formation + Delta-G solvation = -115.973985 kcal Electronic energy + Delta-G solvation = -18139.374134 eV Core-core repulsion = 14675.142327 eV Total energy + Delta-G solvation = -3464.231807 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.09414 -47.76640 -46.04086 -38.59488 -35.16118 -33.55006 -30.91509 -30.36324 -26.78136 -25.26157 -24.11685 -21.20952 -20.61481 -17.68982 -17.31504 -16.33193 -16.16650 -15.95220 -15.49947 -14.97837 -14.85827 -14.71909 -14.31093 -13.23528 -13.03455 -12.98566 -12.77982 -12.45243 -11.97976 -11.88740 -11.78881 -11.58712 -11.19583 -11.04260 -10.82682 -10.32535 -9.94821 -9.53527 -8.70592 -8.37538 -8.00174 -7.80115 -6.69067 -4.85562 2.28129 2.53301 3.01346 3.04418 3.08174 3.81706 4.40747 4.53404 4.87851 4.98055 5.11880 5.38564 5.42203 5.46481 5.64193 5.84224 6.04974 6.27725 6.44401 6.85837 7.00063 7.06350 7.20462 7.32988 7.53967 7.72472 7.97948 8.33448 8.58083 9.58993 10.03000 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.011447 C = 0.007873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.526815 B = 2445.364340 C = 3555.384119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.063 3.937 3 Si 0.914 3.086 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.397 4.397 8 H 0.099 0.901 9 C 0.298 3.702 10 N -0.508 5.508 11 C 0.343 3.657 12 F -0.139 7.139 13 C -0.330 4.330 14 C 0.042 3.958 15 C 0.099 3.901 16 N -0.842 5.842 17 C -0.346 4.346 18 C 0.340 3.660 19 F -0.209 7.209 20 F -0.205 7.205 21 H 0.280 0.720 22 H 0.112 0.888 23 H 0.081 0.919 24 H 0.033 0.967 25 H 0.338 0.662 26 H 0.342 0.658 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.248 -5.928 0.502 7.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.318 5.318 2 C -0.165 4.165 3 Si 0.737 3.263 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.117 0.883 9 C 0.176 3.824 10 N -0.226 5.226 11 C 0.178 3.822 12 F -0.118 7.118 13 C -0.355 4.355 14 C 0.035 3.965 15 C -0.031 4.031 16 N -0.373 5.373 17 C -0.352 4.352 18 C 0.285 3.715 19 F -0.190 7.190 20 F -0.186 7.186 21 H 0.091 0.909 22 H 0.131 0.869 23 H 0.100 0.900 24 H 0.051 0.949 25 H 0.151 0.849 26 H 0.155 0.845 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.873 -4.838 0.541 6.221 hybrid contribution 1.358 -0.090 -0.277 1.388 sum 5.230 -4.929 0.264 7.191 Atomic orbital electron populations 1.70112 1.07483 1.28769 1.25412 1.26227 0.95015 1.01836 0.93407 0.86134 0.81094 0.80175 0.78866 1.17846 1.19428 1.19419 1.20020 0.95181 0.89019 1.38430 0.88318 1.17786 0.85842 0.91226 0.87551 1.68151 1.08310 1.25397 1.20750 1.18587 0.77986 0.91043 0.94623 1.91468 1.30242 1.97299 1.92813 1.20673 0.94207 0.96312 1.24289 1.19001 0.92757 0.92325 0.92383 1.20707 0.97946 0.95689 0.88779 1.58622 1.52871 1.07254 1.18563 1.20551 0.93382 0.95399 1.25869 1.19760 0.90236 0.89771 0.71695 1.92943 1.85629 1.88299 1.52164 1.92957 1.93155 1.79381 1.53104 0.90891 0.86947 0.90039 0.94855 0.84924 0.84494 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.44 11.49 55.55 0.64 -17.80 15 2 C 0.06 1.59 5.49 -17.34 -0.10 1.49 15 3 Si 0.91 18.46 29.56 -169.99 -5.02 13.44 15 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 7 C -0.40 -10.49 8.16 -37.71 -0.31 -10.80 15 8 H 0.10 2.52 5.55 -52.49 -0.29 2.23 15 9 C 0.30 8.01 6.53 -84.99 -0.55 7.45 15 10 N -0.51 -14.17 7.91 -11.45 -0.09 -14.26 15 11 C 0.34 8.70 8.41 -17.31 -0.15 8.56 15 12 F -0.14 -3.36 17.29 2.25 0.04 -3.32 15 13 C -0.33 -7.35 9.76 -39.03 -0.38 -7.73 15 14 C 0.04 0.88 5.47 -104.41 -0.57 0.30 15 15 C 0.10 1.54 6.14 -4.98 -0.03 1.51 15 16 N -0.84 -11.92 9.58 -11.41 -0.11 -12.03 15 17 C -0.35 -8.00 5.44 -103.73 -0.56 -8.56 15 18 C 0.34 6.79 4.31 36.00 0.16 6.95 15 19 F -0.21 -4.42 16.08 2.25 0.04 -4.39 15 20 F -0.20 -4.32 16.01 2.25 0.04 -4.28 15 21 H 0.28 6.62 8.29 -40.82 -0.34 6.28 15 22 H 0.11 2.22 8.06 -52.48 -0.42 1.80 15 23 H 0.08 1.16 8.03 -51.93 -0.42 0.74 15 24 H 0.03 0.47 6.95 -51.93 -0.36 0.11 15 25 H 0.34 3.60 9.08 -39.29 -0.36 3.24 15 26 H 0.34 4.89 7.72 -39.29 -0.30 4.59 15 27 H 0.08 1.33 5.12 -51.93 -0.27 1.06 15 LS Contribution 247.73 15.07 3.73 3.73 Total: -1.00 -29.42 247.73 -4.79 -34.21 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -1.55 Total: 5.54 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -2.49 Total: -0.83 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.44 Total: -44.10 kcal Atomic # 9 Polarization: -12.10 SS G_CDS: 0.11 Total: -11.99 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.42 -4.79 -34.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238661778.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.765 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds