Wall clock time and date at job start Mon Mar 30 2020 03:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40063 * 125.89444 * 2 1 4 4 C 1.32913 * 108.08287 * 180.14671 * 3 2 1 5 5 C 1.41385 * 126.08351 * 179.90977 * 4 3 2 6 6 H 1.08005 * 119.99888 * 179.68942 * 5 4 3 7 7 C 1.39841 * 120.00226 * 359.41246 * 5 4 3 8 8 N 1.30900 * 119.99550 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00020 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46935 * 60.00067 * 9 7 5 11 11 H 1.48495 * 109.46983 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47384 * 300.00067 * 9 7 5 13 13 C 1.41771 * 107.83106 * 359.64261 * 4 3 2 14 14 Br 1.89092 * 126.09708 * 180.20593 * 13 4 3 15 15 C 1.35332 * 107.80784 * 0.23199 * 13 4 3 16 16 O 1.35759 * 125.96906 * 179.97438 * 15 13 4 17 17 H 1.09002 * 109.46541 * 270.25658 * 1 2 3 18 18 H 1.09003 * 109.46943 * 30.24728 * 1 2 3 19 19 H 1.08991 * 109.47460 * 150.25215 * 1 2 3 20 20 H 0.97009 * 119.99518 * 179.97438 * 8 7 5 21 21 H 0.96702 * 113.99895 * 90.01846 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2862 1.1346 0.0000 4 6 3.5516 0.7281 -0.0032 5 6 4.6939 1.5612 -0.0062 6 1 5.6814 1.1237 -0.0036 7 6 4.5453 2.9517 -0.0182 8 7 3.3484 3.4818 -0.0262 9 14 6.0545 4.0523 -0.0228 10 1 6.8706 3.7683 -1.2305 11 1 5.6295 5.4751 -0.0365 12 1 6.8633 3.7886 1.1944 13 6 3.5521 -0.6896 0.0031 14 35 5.0804 -1.8031 0.0074 15 6 2.2638 -1.1040 0.0048 16 8 1.8411 -2.3941 0.0100 17 1 -0.3632 0.0046 1.0277 18 1 -0.3633 0.8878 -0.5177 19 1 -0.3634 -0.8921 -0.5099 20 1 3.2453 4.4463 -0.0342 21 1 1.7184 -2.7642 0.8949 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257717979.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:56 Heat of formation + Delta-G solvation = 30.927433 kcal Electronic energy + Delta-G solvation = -10852.002010 eV Core-core repulsion = 8583.303436 eV Total energy + Delta-G solvation = -2268.698573 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.58152 -36.34736 -33.57751 -31.83952 -29.80733 -27.59768 -26.53011 -24.11510 -20.28678 -19.62267 -17.68808 -16.02481 -15.47894 -14.78253 -14.04215 -13.39906 -13.19653 -12.67593 -11.93705 -11.80137 -11.20220 -11.06067 -10.79265 -10.56748 -10.13194 -9.82037 -9.29174 -9.26109 -8.46396 -7.75030 -7.11700 -6.45451 -4.41858 2.77650 2.86061 3.13818 3.19738 3.23630 3.89515 4.11235 4.17124 4.88652 5.50489 5.52594 5.81703 6.01926 6.50330 6.89710 7.16960 7.35657 7.60675 8.31868 8.54413 8.75895 9.03953 9.64043 10.51019 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.024839 B = 0.012861 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.995925 B = 2176.525107 C = 3285.815112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.413 5.413 3 N -0.304 5.304 4 C 0.238 3.762 5 C -0.436 4.436 6 H 0.089 0.911 7 C 0.073 3.927 8 N -0.770 5.770 9 Si 0.911 3.089 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.266 1.266 13 C -0.267 4.267 14 Br -0.062 7.062 15 C 0.256 3.744 16 O -0.475 6.475 17 H 0.054 0.946 18 H 0.079 0.921 19 H 0.067 0.933 20 H 0.274 0.726 21 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 -7.358 1.576 7.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.203 5.203 3 N -0.137 5.137 4 C 0.086 3.914 5 C -0.475 4.475 6 H 0.107 0.893 7 C -0.148 4.148 8 N -0.398 5.398 9 Si 0.736 3.264 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.191 1.191 13 C -0.361 4.361 14 Br 0.020 6.980 15 C 0.085 3.915 16 O -0.277 6.277 17 H 0.072 0.928 18 H 0.098 0.902 19 H 0.086 0.914 20 H 0.084 0.916 21 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.412 -6.652 0.956 6.867 hybrid contribution 0.598 -0.101 0.516 0.796 sum -0.814 -6.753 1.472 6.960 Atomic orbital electron populations 1.21363 0.77066 1.02805 1.01319 1.49427 1.05630 1.04531 1.60662 1.79261 0.99471 0.97289 1.37637 1.19095 0.92752 0.87303 0.92236 1.18704 0.91796 0.89781 1.47244 0.89276 1.25841 0.96846 0.98786 0.93305 1.69932 1.22658 1.12507 1.34681 0.86325 0.81863 0.78443 0.79787 1.19057 1.20622 1.19058 1.21368 0.88555 0.95231 1.30951 1.96243 1.38139 1.65027 1.98574 1.18358 0.88669 0.79849 1.04672 1.84812 1.88787 1.21293 1.32799 0.92795 0.90186 0.91410 0.91564 0.76361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.03 11.42 59.85 0.68 2.72 14 2 N -0.41 -9.64 4.05 -68.14 -0.28 -9.92 14 3 N -0.30 -8.50 10.82 32.26 0.35 -8.15 14 4 C 0.24 6.65 6.76 -84.85 -0.57 6.07 14 5 C -0.44 -12.09 9.21 -37.79 -0.35 -12.44 14 6 H 0.09 2.36 7.63 -52.48 -0.40 1.96 14 7 C 0.07 1.93 5.49 -17.35 -0.10 1.83 14 8 N -0.77 -21.40 11.94 55.54 0.66 -20.73 14 9 Si 0.91 19.65 29.56 -169.99 -5.02 14.62 14 10 H -0.27 -5.65 7.11 56.52 0.40 -5.25 14 11 H -0.28 -5.91 7.11 56.52 0.40 -5.50 14 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 14 13 C -0.27 -6.60 6.58 -39.27 -0.26 -6.86 14 14 Br -0.06 -1.29 33.65 -68.01 -2.29 -3.58 14 15 C 0.26 5.77 7.93 -16.62 -0.13 5.64 14 16 O -0.47 -8.59 13.55 -18.99 -0.26 -8.84 14 17 H 0.05 0.82 8.14 -51.93 -0.42 0.40 14 18 H 0.08 1.36 8.14 -51.93 -0.42 0.94 14 19 H 0.07 0.99 8.14 -51.93 -0.42 0.57 14 20 H 0.27 6.97 8.30 -40.82 -0.34 6.63 14 21 H 0.38 4.97 9.06 45.56 0.41 5.38 14 LS Contribution 221.68 15.07 3.34 3.34 Total: -1.00 -31.79 221.68 -4.61 -36.40 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -0.39 Total: -0.10 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.72 Total: -3.03 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.74 Total: -38.80 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.26 Total: -8.84 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 35 Polarization: -1.29 SS G_CDS: -2.29 Total: -3.58 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -31.79 -4.61 -36.40 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257717979.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.328 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds