Wall clock time and date at job start Mon Mar 30 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40004 * 126.14726 * 2 1 4 4 C 1.31503 * 109.11957 * 180.02562 * 3 2 1 5 5 O 1.35987 * 125.51795 * 179.97438 * 4 3 2 6 6 C 1.39226 * 108.97063 * 359.97438 * 4 3 2 7 7 Br 1.89105 * 126.26869 * 179.97438 * 6 4 3 8 8 C 1.37566 * 126.14681 * 180.02562 * 2 1 3 9 9 C 1.40160 * 126.63098 * 0.22092 * 8 2 1 10 10 H 1.08008 * 119.99506 * 144.35260 * 9 8 2 11 11 C 1.40137 * 120.00257 * 324.34626 * 9 8 2 12 12 N 1.30781 * 120.00098 * 339.01448 * 11 9 8 13 13 Si 1.86803 * 120.00175 * 159.01492 * 11 9 8 14 14 H 1.48497 * 109.47152 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47169 * 120.00176 * 13 11 9 16 16 H 1.48497 * 109.47146 * 240.00112 * 13 11 9 17 17 H 1.09000 * 109.47046 * 269.94308 * 1 2 3 18 18 H 1.08997 * 109.46837 * 29.94379 * 1 2 3 19 19 H 1.08999 * 109.46984 * 149.94265 * 1 2 3 20 20 H 0.96701 * 113.99913 * 270.02550 * 5 4 3 21 21 H 0.96999 * 120.00028 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2909 1.1305 0.0000 4 6 3.5483 0.7454 -0.0006 5 8 4.6278 1.5724 -0.0012 6 6 3.5955 -0.6460 -0.0004 7 35 5.1572 -1.7124 -0.0016 8 6 2.2765 -1.1109 -0.0005 9 6 1.8615 -2.4496 -0.0054 10 1 2.4294 -3.1889 -0.5508 11 6 0.7100 -2.8289 0.6973 12 7 0.2572 -2.0757 1.6659 13 14 -0.1784 -4.4103 0.2508 14 1 0.5306 -5.0765 -0.8711 15 1 -0.2009 -5.3149 1.4282 16 1 -1.5708 -4.0970 -0.1594 17 1 -0.3633 -0.0010 1.0277 18 1 -0.3633 0.8905 -0.5130 19 1 -0.3633 -0.8895 -0.5147 20 1 4.9393 1.8118 -0.8848 21 1 -0.5401 -2.3380 2.1521 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257719681.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:57 Heat of formation + Delta-G solvation = 0.028917 kcal Electronic energy + Delta-G solvation = -11008.787922 eV Core-core repulsion = 8738.749488 eV Total energy + Delta-G solvation = -2270.038434 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.23341 -38.04594 -35.61975 -32.98075 -31.87122 -30.45996 -27.06589 -26.43735 -22.07566 -21.46215 -19.46701 -17.81855 -17.04271 -16.57927 -15.97541 -15.14012 -14.76711 -14.43756 -13.61031 -13.39983 -13.01285 -12.90445 -12.81122 -12.36560 -11.91944 -11.42872 -11.12733 -11.04015 -10.40669 -9.66072 -8.89251 -8.79266 -6.71074 1.15406 1.37124 1.44936 1.53559 1.60128 1.91054 2.19027 2.21847 2.93874 3.51586 4.25053 4.62704 4.84098 4.96662 5.16439 5.26455 5.55665 5.85139 6.28617 6.61546 6.88853 6.97830 7.27393 8.19447 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.029276 B = 0.012626 C = 0.009192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.190377 B = 2217.196238 C = 3045.231138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.143 3.857 2 N -0.391 5.391 3 N -0.400 5.400 4 C 0.283 3.717 5 O -0.470 6.470 6 C -0.391 4.391 7 Br -0.049 7.049 8 C 0.295 3.705 9 C -0.478 4.478 10 H 0.101 0.899 11 C 0.049 3.951 12 N -0.814 5.814 13 Si 0.985 3.015 14 H -0.257 1.257 15 H -0.269 1.269 16 H -0.255 1.255 17 H 0.065 0.935 18 H 0.075 0.925 19 H 0.076 0.924 20 H 0.406 0.594 21 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.008 -2.285 -3.918 4.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.181 5.181 3 N -0.233 5.233 4 C 0.078 3.922 5 O -0.275 6.275 6 C -0.483 4.483 7 Br 0.033 6.967 8 C 0.172 3.828 9 C -0.513 4.513 10 H 0.119 0.881 11 C -0.169 4.169 12 N -0.441 5.441 13 Si 0.805 3.195 14 H -0.181 1.181 15 H -0.194 1.194 16 H -0.179 1.179 17 H 0.083 0.917 18 H 0.094 0.906 19 H 0.095 0.905 20 H 0.263 0.737 21 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.565 -1.564 -3.139 3.552 hybrid contribution -0.007 -0.741 -0.318 0.807 sum 0.558 -2.305 -3.457 4.192 Atomic orbital electron populations 1.21601 0.74003 1.01916 1.02376 1.48464 1.05581 1.01781 1.62274 1.76808 1.00721 1.10648 1.35118 1.19263 0.86428 0.87174 0.99321 1.84750 1.41373 1.66809 1.34546 1.21844 0.91837 0.92230 1.42401 1.96110 1.31879 1.69775 1.98972 1.18543 0.86729 0.89129 0.88439 1.18977 1.10622 0.91328 1.30421 0.88132 1.26702 0.95884 1.02356 0.92001 1.69897 1.20922 1.39299 1.14008 0.85097 0.78416 0.76576 0.79445 1.18062 1.19430 1.17917 0.91702 0.90639 0.90547 0.73695 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.00 9.53 127.77 1.22 7.22 14 2 N -0.39 -19.81 4.04 -360.69 -1.46 -21.26 14 3 N -0.40 -20.62 12.55 -170.79 -2.14 -22.77 14 4 C 0.28 14.01 8.36 84.98 0.71 14.72 14 5 O -0.47 -19.49 13.66 -93.40 -1.28 -20.77 14 6 C -0.39 -19.84 6.66 22.90 0.15 -19.68 14 7 Br -0.05 -2.12 33.86 -20.37 -0.69 -2.81 14 8 C 0.30 15.46 6.21 39.10 0.24 15.70 14 9 C -0.48 -23.67 8.88 23.20 0.21 -23.47 14 10 H 0.10 4.90 7.93 -2.91 -0.02 4.88 14 11 C 0.05 2.21 4.05 85.31 0.35 2.55 14 12 N -0.81 -37.84 10.43 21.86 0.23 -37.61 14 13 Si 0.98 33.76 29.61 68.60 2.03 35.79 14 14 H -0.26 -8.81 7.11 99.48 0.71 -8.10 14 15 H -0.27 -9.12 7.11 99.48 0.71 -8.41 14 16 H -0.26 -8.11 7.11 99.48 0.71 -7.40 14 17 H 0.06 2.80 6.94 -2.39 -0.02 2.78 14 18 H 0.08 2.76 8.14 -2.39 -0.02 2.74 14 19 H 0.08 3.07 6.94 -2.39 -0.02 3.05 14 20 H 0.41 12.19 9.06 -74.06 -0.67 11.52 14 21 H 0.30 12.26 8.29 -92.71 -0.77 11.49 14 Total: -1.00 -60.01 216.48 0.17 -59.84 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.60 Total: 12.55 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 2.88 Total: -2.97 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -3.37 Total: -81.64 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -1.28 Total: -20.77 kcal Atomic # 14 Polarization: 33.76 SS G_CDS: 2.03 Total: 35.79 kcal Atomic # 35 Polarization: -2.12 SS G_CDS: -0.69 Total: -2.81 kcal Total: -60.01 0.17 -59.84 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257719681.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.865 kcal (2) G-P(sol) polarization free energy of solvation -60.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds