Wall clock time and date at job start Mon Mar 30 2020 03:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38672 * 126.00428 * 2 1 4 4 C 1.33246 * 107.83097 * 179.72357 * 3 2 1 5 5 Br 1.89108 * 126.04328 * 180.24240 * 4 3 2 6 6 N 1.38358 * 107.90792 * 0.37662 * 4 3 2 7 7 C 1.37303 * 125.94929 * 179.88538 * 6 4 3 8 8 H 1.07991 * 120.00506 * 140.78132 * 7 6 4 9 9 C 1.38779 * 119.99577 * 320.78584 * 7 6 4 10 10 N 1.31480 * 119.99885 * 322.37154 * 9 7 6 11 11 Si 1.86799 * 119.99832 * 142.64677 * 9 7 6 12 12 H 1.48499 * 109.47062 * 179.72015 * 11 9 7 13 13 H 1.48494 * 109.47267 * 299.72560 * 11 9 7 14 14 H 1.48501 * 109.46913 * 59.72380 * 11 9 7 15 15 C 1.34746 * 108.10460 * 359.61801 * 6 4 3 16 16 O 1.21720 * 125.91842 * 180.22441 * 15 6 4 17 17 H 1.09001 * 109.47180 * 270.04677 * 1 2 3 18 18 H 1.09003 * 109.46591 * 30.04462 * 1 2 3 19 19 H 1.08997 * 109.47180 * 150.04059 * 1 2 3 20 20 H 1.08001 * 126.08302 * 359.97438 * 3 2 1 21 21 H 0.96995 * 120.00155 * 354.59659 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2802 1.1218 0.0000 4 6 3.5462 0.7062 0.0061 5 35 5.0803 1.8120 0.0154 6 7 3.5398 -0.6773 0.0014 7 6 4.6476 -1.4885 0.0030 8 1 4.6530 -2.3941 0.5912 9 6 5.7606 -1.1445 -0.7513 10 7 5.6076 -0.5901 -1.9337 11 14 7.4758 -1.4762 -0.0901 12 1 8.4845 -1.0260 -1.0826 13 1 7.6679 -0.7348 1.1821 14 1 7.6386 -2.9316 0.1557 15 6 2.2572 -1.0901 0.0009 16 8 1.8795 -2.2472 0.0010 17 1 -0.3633 0.0008 1.0277 18 1 -0.3632 0.8896 -0.5146 19 1 -0.3633 -0.8903 -0.5132 20 1 1.9481 2.1495 -0.0004 21 1 4.7200 -0.4930 -2.3126 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257760070.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:00 Heat of formation + Delta-G solvation = 0.751315 kcal Electronic energy + Delta-G solvation = -11182.544141 eV Core-core repulsion = 8912.537033 eV Total energy + Delta-G solvation = -2270.007108 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.03598 -37.64189 -36.81493 -34.05388 -32.30152 -30.16053 -27.65478 -26.26968 -22.74201 -21.82556 -20.13919 -17.90068 -17.42803 -16.43507 -16.05545 -15.61447 -15.31322 -14.70210 -14.29666 -13.81838 -13.31924 -13.09058 -12.88699 -12.21350 -11.93202 -11.50189 -11.38257 -11.12688 -10.97688 -10.24833 -9.12091 -8.60983 -6.37718 0.61128 1.15918 1.47385 1.54108 1.71045 1.82842 2.05936 2.42198 2.78699 3.31426 4.08411 4.42530 4.50241 4.54643 4.71109 5.05250 5.64683 5.78831 5.84994 6.50130 6.72551 7.02704 7.73673 8.19243 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.029554 B = 0.015393 C = 0.010865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.190405 B = 1818.581453 C = 2576.533050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.522 5.522 3 C -0.001 4.001 4 C -0.019 4.019 5 Br 0.024 6.976 6 N -0.353 5.353 7 C -0.477 4.477 8 H 0.066 0.934 9 C 0.027 3.973 10 N -0.820 5.820 11 Si 1.094 2.906 12 H -0.263 1.263 13 H -0.254 1.254 14 H -0.270 1.270 15 C 0.563 3.437 16 O -0.651 6.651 17 H 0.080 0.920 18 H 0.122 0.878 19 H 0.065 0.935 20 H 0.229 0.771 21 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 10.803 3.201 11.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.240 5.240 3 C -0.130 4.130 4 C -0.207 4.207 5 Br 0.107 6.893 6 N -0.056 5.056 7 C -0.602 4.602 8 H 0.084 0.916 9 C -0.186 4.186 10 N -0.445 5.445 11 Si 0.911 3.089 12 H -0.187 1.187 13 H -0.179 1.179 14 H -0.195 1.195 15 C 0.267 3.733 16 O -0.538 6.538 17 H 0.099 0.901 18 H 0.141 0.859 19 H 0.084 0.916 20 H 0.245 0.755 21 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.548 10.568 2.828 10.953 hybrid contribution -2.177 -0.915 0.162 2.367 sum -2.724 9.653 2.990 10.466 Atomic orbital electron populations 1.21979 0.73336 1.05002 1.04011 1.45478 1.08384 1.05231 1.64890 1.22006 0.85606 0.93871 1.11527 1.22388 0.94558 0.85400 1.18390 1.96487 1.36718 1.58113 1.98023 1.41104 1.05042 1.04174 1.55318 1.20005 0.92926 1.10862 1.36401 0.91612 1.27678 1.06724 0.92927 0.91291 1.70838 1.26306 1.35564 1.11784 0.83292 0.70135 0.78170 0.77306 1.18723 1.17856 1.19502 1.17036 0.82556 0.85219 0.88470 1.90751 1.78115 1.18596 1.66375 0.90126 0.85943 0.91582 0.75502 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.68 11.07 127.77 1.41 4.10 14 2 N -0.52 -21.24 3.18 -679.54 -2.16 -23.40 14 3 C 0.00 -0.02 11.46 82.48 0.95 0.93 14 4 C -0.02 -0.84 6.75 82.54 0.56 -0.28 14 5 Br 0.02 0.93 31.45 -20.37 -0.64 0.29 14 6 N -0.35 -19.49 2.57 -476.37 -1.22 -20.71 14 7 C -0.48 -28.00 9.40 83.97 0.79 -27.21 14 8 H 0.07 4.14 8.04 -2.92 -0.02 4.12 14 9 C 0.03 1.44 3.58 84.88 0.30 1.74 14 10 N -0.82 -45.06 12.50 21.63 0.27 -44.79 14 11 Si 1.09 46.27 30.04 68.60 2.06 48.34 14 12 H -0.26 -10.61 7.11 99.48 0.71 -9.90 14 13 H -0.25 -9.97 7.11 99.48 0.71 -9.26 14 14 H -0.27 -10.96 7.11 99.48 0.71 -10.25 14 15 C 0.56 30.90 8.46 179.07 1.51 32.42 14 16 O -0.65 -40.78 17.64 -4.41 -0.08 -40.86 14 17 H 0.08 1.92 8.14 -2.39 -0.02 1.90 14 18 H 0.12 2.23 8.14 -2.39 -0.02 2.21 14 19 H 0.07 2.01 8.07 -2.39 -0.02 1.99 14 20 H 0.23 5.50 8.06 -2.91 -0.02 5.48 14 21 H 0.26 15.34 8.38 -92.71 -0.78 14.56 14 Total: -1.00 -73.60 218.23 4.99 -68.61 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: 1.24 Total: 0.84 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 5.52 Total: 11.69 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -3.11 Total: -88.91 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.08 Total: -40.86 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.06 Total: 48.34 kcal Atomic # 35 Polarization: 0.93 SS G_CDS: -0.64 Total: 0.29 kcal Total: -73.60 4.99 -68.61 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257760070.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.360 kcal (2) G-P(sol) polarization free energy of solvation -73.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds