Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86799 * 119.99749 * 2 1 4 4 H 1.48504 * 109.47350 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47176 * 119.99774 * 3 2 1 6 6 H 1.48502 * 109.47196 * 239.99984 * 3 2 1 7 7 C 1.40216 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99678 * 206.50981 * 7 2 1 9 9 C 1.41023 * 119.99943 * 26.50935 * 7 2 1 10 10 C 1.40875 * 120.07784 * 25.44731 * 9 7 2 11 11 C 1.36385 * 120.09835 * 180.02562 * 10 9 7 12 12 F 1.35097 * 119.86902 * 179.97438 * 11 10 9 13 13 C 1.40431 * 120.25682 * 359.95494 * 11 10 9 14 14 C 1.47249 * 119.92455 * 179.97438 * 13 11 10 15 15 O 1.21540 * 119.99868 * 89.99500 * 14 13 11 16 16 O 1.34797 * 120.00081 * 270.00243 * 14 13 11 17 17 C 1.40198 * 120.15318 * 0.02562 * 13 11 10 18 18 F 1.35099 * 120.05031 * 179.97438 * 17 13 11 19 19 C 1.37919 * 119.90035 * 359.74552 * 17 13 11 20 20 F 1.35103 * 120.12523 * 180.27660 * 19 17 13 21 21 H 0.97001 * 119.99670 * 185.89025 * 1 2 3 22 22 H 1.08003 * 119.95448 * 359.97438 * 10 9 7 23 23 H 0.96704 * 117.00374 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0943 1.6965 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0078 -1.2143 0.0005 8 1 3.0026 -1.2632 0.4180 9 6 1.4139 -2.3716 -0.5441 10 6 0.4158 -2.2551 -1.5314 11 6 -0.1592 -3.3741 -2.0580 12 9 -1.1163 -3.2570 -3.0043 13 6 0.2400 -4.6475 -1.6207 14 6 -0.3861 -5.8507 -2.1939 15 8 0.0931 -6.3736 -3.1808 16 8 -1.4909 -6.3721 -1.6240 17 6 1.2326 -4.7758 -0.6390 18 9 1.6147 -6.0019 -0.2194 19 6 1.8217 -3.6487 -0.1055 20 9 2.7826 -3.7672 0.8368 21 1 -0.4850 -0.8356 0.0862 22 1 0.1049 -1.2783 -1.8713 23 1 -1.8659 -7.1627 -2.0357 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257991775.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = -225.310870 kcal Electronic energy + Delta-G solvation = -17528.943584 eV Core-core repulsion = 13891.844728 eV Total energy + Delta-G solvation = -3637.098856 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.029 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.62458 -48.33013 -47.49423 -39.56626 -37.59223 -35.58810 -34.40528 -30.36655 -29.03461 -26.71473 -23.27513 -21.87396 -21.03850 -18.87694 -17.86322 -17.13655 -16.97880 -16.72769 -15.54679 -15.46465 -15.01208 -14.74793 -14.47164 -14.45327 -14.05709 -13.84259 -13.46151 -13.22381 -12.82763 -11.95981 -11.73329 -11.35125 -11.15840 -11.08391 -10.75899 -10.67355 -10.36926 -10.05488 -9.55893 -8.35710 -8.05872 -7.72767 -5.22502 1.72537 1.94741 2.56633 2.86016 2.90932 3.10578 3.52266 3.59708 3.83330 4.53756 4.58308 5.09288 5.43440 5.75837 5.81261 5.99920 6.41744 6.68857 6.71779 6.84290 7.05146 7.09950 7.27866 7.47208 7.90706 8.02310 8.30264 9.33637 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.030783 B = 0.008386 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.383576 B = 3338.207420 C = 4004.418906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.032 3.968 3 Si 1.072 2.928 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.443 4.443 8 H 0.101 0.899 9 C 0.100 3.900 10 C -0.250 4.250 11 C 0.196 3.804 12 F -0.145 7.145 13 C -0.328 4.328 14 C 0.561 3.439 15 O -0.516 6.516 16 O -0.511 6.511 17 C 0.173 3.827 18 F -0.139 7.139 19 C -0.064 4.064 20 F -0.142 7.142 21 H 0.309 0.691 22 H 0.137 0.863 23 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 -0.633 0.006 0.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.196 4.196 3 Si 0.893 3.107 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.467 4.467 8 H 0.119 0.881 9 C 0.095 3.905 10 C -0.270 4.270 11 C 0.175 3.825 12 F -0.124 7.124 13 C -0.332 4.332 14 C 0.404 3.596 15 O -0.404 6.404 16 O -0.321 6.321 17 C 0.152 3.848 18 F -0.117 7.117 19 C -0.085 4.085 20 F -0.121 7.121 21 H 0.123 0.877 22 H 0.154 0.846 23 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.530 1.165 -0.114 1.285 hybrid contribution -0.109 -2.635 -0.166 2.642 sum -0.639 -1.470 -0.280 1.627 Atomic orbital electron populations 1.70422 1.08331 1.35439 1.21981 1.27600 0.95521 1.05228 0.91264 0.83511 0.75793 0.72506 0.78939 1.19046 1.19217 1.19088 1.21029 1.03534 0.93226 1.28936 0.88118 1.17194 0.91275 0.90845 0.91159 1.20545 1.05938 0.97090 1.03422 1.16543 0.86947 0.91805 0.87159 1.91431 1.61640 1.96861 1.62447 1.17496 1.11159 0.90202 1.14296 1.20582 0.76648 0.82324 0.80027 1.90821 1.62732 1.60989 1.25818 1.84804 1.42564 1.46047 1.58720 1.16787 0.95387 0.78576 0.94062 1.91428 1.90080 1.41340 1.88899 1.17253 0.99817 0.92348 0.99107 1.91344 1.61479 1.96579 1.62730 0.87675 0.84569 0.74285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -16.64 12.31 55.56 0.68 -15.96 14 2 C 0.03 0.67 4.90 -17.30 -0.08 0.59 14 3 Si 1.07 17.84 30.01 -169.99 -5.10 12.74 14 4 H -0.27 -4.42 7.11 56.52 0.40 -4.02 14 5 H -0.27 -4.22 7.11 56.52 0.40 -3.82 14 6 H -0.27 -4.29 7.11 56.52 0.40 -3.89 14 7 C -0.44 -10.11 8.69 -37.78 -0.33 -10.44 14 8 H 0.10 2.23 7.80 -52.49 -0.41 1.82 14 9 C 0.10 2.38 5.30 -106.78 -0.57 1.81 14 10 C -0.25 -5.73 7.88 -39.25 -0.31 -6.04 14 11 C 0.20 4.45 7.23 -39.42 -0.28 4.16 14 12 F -0.15 -3.16 16.80 2.25 0.04 -3.13 14 13 C -0.33 -7.53 5.78 -104.67 -0.60 -8.13 14 14 C 0.56 12.01 7.01 34.39 0.24 12.25 14 15 O -0.52 -11.84 17.90 -19.30 -0.35 -12.19 14 16 O -0.51 -8.89 13.44 -40.76 -0.55 -9.44 14 17 C 0.17 4.03 7.28 -38.96 -0.28 3.75 14 18 F -0.14 -3.13 16.73 2.25 0.04 -3.09 14 19 C -0.06 -1.53 7.30 -38.63 -0.28 -1.82 14 20 F -0.14 -3.36 16.61 2.25 0.04 -3.32 14 21 H 0.31 7.11 6.78 -40.82 -0.28 6.83 14 22 H 0.14 3.09 6.51 -52.48 -0.34 2.75 14 23 H 0.40 4.58 9.11 45.56 0.42 4.99 14 LS Contribution 236.67 15.07 3.57 3.57 Total: -1.00 -26.48 236.67 -3.54 -30.02 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 0.59 Total: 4.66 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -2.50 Total: -3.86 kcal Atomic # 7 Polarization: -16.64 SS G_CDS: 0.68 Total: -15.96 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.89 Total: -21.63 kcal Atomic # 9 Polarization: -9.65 SS G_CDS: 0.11 Total: -9.54 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.10 Total: 12.74 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -26.48 -3.54 -30.02 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257991775.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.291 kcal (2) G-P(sol) polarization free energy of solvation -26.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds