Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86799 * 119.99749 * 2 1 4 4 H 1.48504 * 109.47350 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47176 * 119.99774 * 3 2 1 6 6 H 1.48502 * 109.47196 * 239.99984 * 3 2 1 7 7 C 1.40216 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99678 * 206.50981 * 7 2 1 9 9 C 1.41023 * 119.99943 * 26.50935 * 7 2 1 10 10 C 1.40875 * 120.07784 * 25.44731 * 9 7 2 11 11 C 1.36385 * 120.09835 * 180.02562 * 10 9 7 12 12 F 1.35097 * 119.86902 * 179.97438 * 11 10 9 13 13 C 1.40431 * 120.25682 * 359.95494 * 11 10 9 14 14 C 1.47249 * 119.92455 * 179.97438 * 13 11 10 15 15 O 1.21540 * 119.99868 * 89.99500 * 14 13 11 16 16 O 1.34797 * 120.00081 * 270.00243 * 14 13 11 17 17 C 1.40198 * 120.15318 * 0.02562 * 13 11 10 18 18 F 1.35099 * 120.05031 * 179.97438 * 17 13 11 19 19 C 1.37919 * 119.90035 * 359.74552 * 17 13 11 20 20 F 1.35103 * 120.12523 * 180.27660 * 19 17 13 21 21 H 0.97001 * 119.99670 * 185.89025 * 1 2 3 22 22 H 1.08003 * 119.95448 * 359.97438 * 10 9 7 23 23 H 0.96704 * 117.00374 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0943 1.6965 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0078 -1.2143 0.0005 8 1 3.0026 -1.2632 0.4180 9 6 1.4139 -2.3716 -0.5441 10 6 0.4158 -2.2551 -1.5314 11 6 -0.1592 -3.3741 -2.0580 12 9 -1.1163 -3.2570 -3.0043 13 6 0.2400 -4.6475 -1.6207 14 6 -0.3861 -5.8507 -2.1939 15 8 0.0931 -6.3736 -3.1808 16 8 -1.4909 -6.3721 -1.6240 17 6 1.2326 -4.7758 -0.6390 18 9 1.6147 -6.0019 -0.2194 19 6 1.8217 -3.6487 -0.1055 20 9 2.7826 -3.7672 0.8368 21 1 -0.4850 -0.8356 0.0862 22 1 0.1049 -1.2783 -1.8713 23 1 -1.8659 -7.1627 -2.0357 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257991775.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = -240.415748 kcal Electronic energy + Delta-G solvation = -17529.598581 eV Core-core repulsion = 13891.844728 eV Total energy + Delta-G solvation = -3637.753853 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.029 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.44780 -50.10483 -49.34046 -41.20399 -39.36102 -37.15444 -36.13712 -32.13252 -30.84776 -28.47532 -24.98748 -23.68647 -22.73089 -20.61088 -19.49073 -18.92753 -18.68274 -18.51250 -17.34336 -17.25426 -16.75536 -16.53098 -16.13315 -15.98806 -15.88797 -15.47098 -15.24758 -14.94584 -14.47370 -13.67900 -13.39753 -12.95197 -12.91746 -12.68096 -12.42694 -12.11651 -11.87546 -11.72797 -11.16064 -10.15657 -9.83569 -9.51482 -7.02784 -0.05391 0.11837 0.88784 1.46723 1.54397 1.84843 1.98604 2.19637 2.22833 2.73460 2.81971 3.29024 3.62868 3.99197 4.09689 4.25174 4.63933 4.91298 4.94716 5.24965 5.28524 5.35051 5.50339 5.66625 6.10830 6.26153 6.84779 7.58663 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.030783 B = 0.008386 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.383576 B = 3338.207420 C = 4004.418906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.007 3.993 3 Si 1.120 2.880 4 H -0.265 1.265 5 H -0.251 1.251 6 H -0.256 1.256 7 C -0.452 4.452 8 H 0.104 0.896 9 C 0.082 3.918 10 C -0.250 4.250 11 C 0.194 3.806 12 F -0.140 7.140 13 C -0.341 4.341 14 C 0.566 3.434 15 O -0.536 6.536 16 O -0.500 6.500 17 C 0.171 3.829 18 F -0.136 7.136 19 C -0.083 4.083 20 F -0.145 7.145 21 H 0.298 0.702 22 H 0.136 0.864 23 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 0.024 0.044 0.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.217 4.217 3 Si 0.934 3.066 4 H -0.189 1.189 5 H -0.175 1.175 6 H -0.180 1.180 7 C -0.476 4.476 8 H 0.122 0.878 9 C 0.077 3.923 10 C -0.270 4.270 11 C 0.173 3.827 12 F -0.119 7.119 13 C -0.344 4.344 14 C 0.409 3.591 15 O -0.427 6.427 16 O -0.313 6.313 17 C 0.150 3.850 18 F -0.115 7.115 19 C -0.104 4.104 20 F -0.124 7.124 21 H 0.112 0.888 22 H 0.154 0.846 23 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -0.517 1.770 -0.069 1.846 hybrid contribution -0.185 -2.885 -0.152 2.895 sum -0.703 -1.114 -0.221 1.336 Atomic orbital electron populations 1.70515 1.08966 1.34778 1.22789 1.28936 0.95419 1.07670 0.89663 0.82958 0.74963 0.68713 0.79969 1.18881 1.17511 1.18008 1.21329 1.03732 0.93786 1.28710 0.87775 1.17413 0.91832 0.91211 0.91822 1.20524 1.05894 0.97163 1.03387 1.16561 0.87037 0.91836 0.87216 1.91436 1.61374 1.96846 1.62202 1.17695 1.11444 0.91166 1.14137 1.20280 0.77273 0.81894 0.79611 1.90814 1.63640 1.61526 1.26684 1.84717 1.40897 1.47422 1.58303 1.16848 0.95413 0.78584 0.94172 1.91426 1.90063 1.41088 1.88878 1.17392 1.00476 0.92782 0.99757 1.91324 1.61586 1.96616 1.62853 0.88838 0.84586 0.70987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -33.16 12.31 21.87 0.27 -32.89 14 2 C 0.01 0.29 4.90 85.35 0.42 0.71 14 3 Si 1.12 33.89 30.01 68.60 2.06 35.95 14 4 H -0.26 -7.94 7.11 99.48 0.71 -7.23 14 5 H -0.25 -6.97 7.11 99.48 0.71 -6.26 14 6 H -0.26 -7.34 7.11 99.48 0.71 -6.63 14 7 C -0.45 -20.33 8.69 23.43 0.20 -20.12 14 8 H 0.10 4.53 7.80 -2.91 -0.02 4.51 14 9 C 0.08 3.90 5.30 -21.26 -0.11 3.78 14 10 C -0.25 -11.42 7.88 22.48 0.18 -11.24 14 11 C 0.19 8.72 7.23 22.37 0.16 8.88 14 12 F -0.14 -5.98 16.80 44.97 0.76 -5.23 14 13 C -0.34 -15.45 5.78 -19.90 -0.11 -15.56 14 14 C 0.57 23.46 7.01 70.19 0.49 23.95 14 15 O -0.54 -24.00 17.90 19.71 0.35 -23.65 14 16 O -0.50 -16.28 13.44 -57.08 -0.77 -17.05 14 17 C 0.17 7.92 7.28 22.67 0.17 8.09 14 18 F -0.14 -6.06 16.73 44.97 0.75 -5.31 14 19 C -0.08 -3.97 7.30 22.88 0.17 -3.80 14 20 F -0.14 -6.82 16.61 44.97 0.75 -6.07 14 21 H 0.30 13.72 6.78 -92.71 -0.63 13.09 14 22 H 0.14 6.15 6.51 -2.91 -0.02 6.13 14 23 H 0.43 8.56 9.11 -74.05 -0.67 7.89 14 Total: -1.00 -54.56 236.67 6.50 -48.06 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.78 Total: 11.49 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 1.56 Total: -5.31 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.27 Total: -32.89 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.41 Total: -40.69 kcal Atomic # 9 Polarization: -18.86 SS G_CDS: 2.25 Total: -16.60 kcal Atomic # 14 Polarization: 33.89 SS G_CDS: 2.06 Total: 35.95 kcal Total: -54.56 6.50 -48.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257991775.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.356 kcal (2) G-P(sol) polarization free energy of solvation -54.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds