Wall clock time and date at job start Mon Mar 30 2020 03:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30602 * 1 3 3 Si 1.86797 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47421 * 270.00599 * 3 2 1 5 5 H 1.48506 * 109.46977 * 30.00231 * 3 2 1 6 6 H 1.48503 * 109.46940 * 149.99903 * 3 2 1 7 7 C 1.40210 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.41621 * 120.00145 * 359.97438 * 7 2 1 10 10 O 1.21735 * 119.99529 * 5.07390 * 9 7 2 11 11 N 1.34774 * 120.00024 * 185.08070 * 9 7 2 12 12 C 1.39499 * 123.85707 * 174.72106 * 11 9 7 13 13 C 1.39560 * 130.75501 * 359.94282 * 12 11 9 14 14 C 1.37740 * 120.22233 * 180.02562 * 13 12 11 15 15 C 1.39076 * 120.30441 * 0.28078 * 14 13 12 16 16 N 1.39603 * 120.16338 * 179.69583 * 15 14 13 17 17 C 1.39161 * 119.67592 * 359.43106 * 15 14 13 18 18 C 1.37498 * 119.85414 * 0.58354 * 17 15 14 19 19 C 1.51153 * 132.80114 * 179.68565 * 18 17 15 20 20 C 1.34346 * 123.86073 * 354.68848 * 11 9 7 21 21 O 1.21246 * 126.42671 * 0.04280 * 20 11 9 22 22 H 0.96995 * 120.00605 * 359.97438 * 1 2 3 23 23 H 1.07996 * 119.88758 * 0.02562 * 13 12 11 24 24 H 1.08005 * 119.84892 * 180.02562 * 14 13 12 25 25 H 0.97003 * 120.00248 * 0.02562 * 16 15 14 26 26 H 0.97000 * 120.00143 * 179.97438 * 16 15 14 27 27 H 1.08004 * 120.07768 * 180.29489 * 17 15 14 28 28 H 1.08995 * 110.51382 * 298.64582 * 19 18 17 29 29 H 1.09000 * 110.51102 * 61.22296 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.4874 2.0465 -1.4000 5 1 1.4374 2.6526 0.7001 6 1 3.5376 1.4401 0.7001 7 6 2.0071 -1.2143 -0.0005 8 1 3.0871 -1.2143 -0.0001 9 6 1.2990 -2.4407 -0.0005 10 8 0.0852 -2.4427 -0.0933 11 7 1.9689 -3.6056 0.1023 12 6 1.3501 -4.8506 0.2170 13 6 -0.0015 -5.1962 0.2540 14 6 -0.3766 -6.5161 0.3749 15 6 0.5877 -7.5140 0.4667 16 7 0.2042 -8.8502 0.5955 17 6 1.9366 -7.1748 0.4241 18 6 2.3073 -5.8562 0.3038 19 6 3.6521 -5.1694 0.2365 20 6 3.3090 -3.7007 0.1055 21 8 4.0961 -2.7824 0.0198 22 1 -0.4851 0.8400 0.0004 23 1 -0.7559 -4.4262 0.1878 24 1 -1.4243 -6.7768 0.4025 25 1 -0.7367 -9.0845 0.6207 26 1 0.8787 -9.5444 0.6590 27 1 2.6909 -7.9450 0.4901 28 1 4.2189 -5.3492 1.1499 29 1 4.2127 -5.5118 -0.6333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258671338.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:47 Heat of formation + Delta-G solvation = -26.813619 kcal Electronic energy + Delta-G solvation = -17305.828197 eV Core-core repulsion = 14387.319414 eV Total energy + Delta-G solvation = -2918.508783 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.10177 -38.26693 -36.75212 -35.50564 -32.90985 -32.65655 -31.63338 -28.67327 -27.12629 -26.24990 -22.62989 -21.51270 -21.13972 -19.40756 -17.37117 -16.75712 -16.34649 -16.01119 -15.61495 -15.25648 -14.47244 -13.85444 -13.26074 -13.17052 -12.98841 -12.89055 -12.74500 -12.60084 -12.49490 -11.79259 -11.35677 -11.15151 -11.07290 -10.53823 -10.46220 -10.32001 -9.08270 -8.76808 -8.74987 -8.46888 -7.89285 -6.73451 -6.44084 -4.91821 1.71871 1.89733 2.92742 3.15178 3.16805 3.24146 3.87626 3.98850 4.11109 4.14898 4.55394 4.76381 4.88416 5.28913 5.57856 5.62076 5.66204 5.77219 5.91859 6.05170 6.38830 6.56324 6.61384 6.86501 7.06381 7.29943 7.45789 7.56198 7.73994 7.90161 8.21930 8.63665 8.85318 9.12487 10.22846 10.45588 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.039137 B = 0.006912 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.265735 B = 4049.751425 C = 4743.266120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.081 3.919 3 Si 0.919 3.081 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.522 4.522 8 H 0.112 0.888 9 C 0.520 3.480 10 O -0.554 6.554 11 N -0.506 5.506 12 C 0.097 3.903 13 C -0.066 4.066 14 C -0.173 4.173 15 C 0.184 3.816 16 N -0.883 5.883 17 C -0.156 4.156 18 C -0.105 4.105 19 C -0.116 4.116 20 C 0.521 3.479 21 O -0.485 6.485 22 H 0.274 0.726 23 H 0.147 0.853 24 H 0.121 0.879 25 H 0.395 0.605 26 H 0.393 0.607 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.477 -13.495 1.348 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.142 4.142 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.555 4.555 8 H 0.130 0.870 9 C 0.335 3.665 10 O -0.437 6.437 11 N -0.241 5.241 12 C 0.001 3.999 13 C -0.087 4.087 14 C -0.196 4.196 15 C 0.081 3.919 16 N -0.424 5.424 17 C -0.179 4.179 18 C -0.108 4.108 19 C -0.155 4.155 20 C 0.310 3.690 21 O -0.359 6.359 22 H 0.085 0.915 23 H 0.164 0.836 24 H 0.139 0.861 25 H 0.222 0.778 26 H 0.220 0.780 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.076 -12.642 1.231 12.870 hybrid contribution 0.181 0.327 0.039 0.376 sum 2.257 -12.315 1.270 12.584 Atomic orbital electron populations 1.70020 1.07566 1.28272 1.31321 1.25998 0.94661 1.01287 0.92261 0.86153 0.80419 0.79848 0.79291 1.19307 1.20248 1.18216 1.21155 0.97307 0.88890 1.48177 0.87046 1.17439 0.87572 0.81453 0.79995 1.90589 1.13731 1.84962 1.54445 1.45418 1.07992 1.07349 1.63333 1.18287 0.93506 0.84998 1.03097 1.20796 0.94278 0.96048 0.97596 1.20377 0.98160 0.91571 1.09485 1.17549 0.92628 0.84778 0.96956 1.42225 1.09708 1.04280 1.86210 1.19399 0.93700 0.94256 1.10529 1.19637 0.94386 0.92843 1.03967 1.21110 0.96087 0.93193 1.05123 1.20407 0.82309 0.90549 0.75771 1.90626 1.53247 1.44411 1.47602 0.91525 0.83564 0.86080 0.77768 0.77951 0.86282 0.86704 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.79 11.74 55.56 0.65 -21.14 15 2 C 0.08 2.29 5.50 -17.33 -0.10 2.19 15 3 Si 0.92 20.65 29.56 -169.99 -5.02 15.62 15 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 15 7 C -0.52 -15.45 8.68 -37.55 -0.33 -15.78 15 8 H 0.11 3.26 4.94 -52.49 -0.26 3.00 15 9 C 0.52 15.36 7.47 -14.97 -0.11 15.25 15 10 O -0.55 -17.50 13.06 5.16 0.07 -17.44 15 11 N -0.51 -12.61 2.80 -62.11 -0.17 -12.78 15 12 C 0.10 2.09 6.61 -83.56 -0.55 1.54 15 13 C -0.07 -1.34 9.45 -39.27 -0.37 -1.71 15 14 C -0.17 -2.74 9.87 -39.45 -0.39 -3.13 15 15 C 0.18 2.53 6.77 -83.67 -0.57 1.97 15 16 N -0.88 -8.39 9.09 32.48 0.30 -8.10 15 17 C -0.16 -2.21 9.89 -39.51 -0.39 -2.60 15 18 C -0.10 -1.80 6.34 -104.35 -0.66 -2.46 15 19 C -0.12 -1.86 6.88 -28.47 -0.20 -2.05 15 20 C 0.52 11.63 8.07 -10.84 -0.09 11.55 15 21 O -0.48 -12.01 14.75 5.59 0.08 -11.93 15 22 H 0.27 7.19 8.29 -40.82 -0.34 6.85 15 23 H 0.15 3.35 6.34 -52.49 -0.33 3.01 15 24 H 0.12 1.61 8.06 -52.48 -0.42 1.18 15 25 H 0.39 3.06 8.85 -40.82 -0.36 2.70 15 26 H 0.39 2.88 8.85 -40.82 -0.36 2.52 15 27 H 0.12 1.32 8.06 -52.48 -0.42 0.89 15 28 H 0.12 1.54 8.14 -51.93 -0.42 1.12 15 29 H 0.11 1.53 8.14 -51.93 -0.42 1.11 15 LS Contribution 257.50 15.07 3.88 3.88 Total: -1.00 -34.98 257.50 -6.11 -41.09 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -2.14 Total: 6.03 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -3.75 Total: 4.76 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.77 Total: -42.02 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: 0.15 Total: -29.36 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.98 -6.11 -41.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258671338.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.274 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds