Wall clock time and date at job start Mon Mar 30 2020 03:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86794 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47324 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47247 * 300.00033 * 3 2 1 6 6 H 1.48501 * 109.47281 * 59.99875 * 3 2 1 7 7 C 1.40056 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99984 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00266 * 0.02562 * 9 7 2 11 11 N 1.34779 * 120.00057 * 179.97438 * 9 7 2 12 12 C 1.46491 * 120.00311 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.47436 * 180.02562 * 12 11 9 14 14 C 1.38721 * 119.76369 * 269.98262 * 13 12 11 15 15 C 1.37687 * 120.41872 * 180.02562 * 14 13 12 16 16 C 1.39589 * 119.73142 * 0.03901 * 15 14 13 17 17 N 1.36054 * 133.80448 * 179.97438 * 16 15 14 18 18 C 1.29910 * 108.79957 * 179.97438 * 17 16 15 19 19 O 1.34224 * 110.28497 * 0.27100 * 18 17 16 20 20 C 1.35112 * 108.16577 * 359.56020 * 19 18 17 21 21 C 1.37912 * 119.75862 * 90.00107 * 13 12 11 22 22 H 0.97004 * 120.00153 * 359.97438 * 1 2 3 23 23 H 0.97000 * 119.99663 * 0.02562 * 11 9 7 24 24 H 1.09003 * 109.46995 * 60.00416 * 12 11 9 25 25 H 1.09000 * 109.47642 * 300.01068 * 12 11 9 26 26 H 1.07995 * 119.78942 * 0.02562 * 14 13 12 27 27 H 1.08005 * 120.13042 * 179.97438 * 15 14 13 28 28 H 1.08002 * 124.85387 * 179.97438 * 18 17 16 29 29 H 1.07995 * 120.06587 * 0.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9488 -3.6478 -0.0016 12 6 1.2164 -4.9164 -0.0010 13 6 2.1956 -6.0619 -0.0018 14 6 2.6419 -6.5856 -1.2063 15 6 3.5360 -7.6325 -1.2228 16 6 3.9950 -8.1698 -0.0190 17 7 4.8543 -9.1765 0.2961 18 6 4.9345 -9.2691 1.5894 19 8 4.1451 -8.3527 2.1714 20 6 3.5414 -7.6371 1.1972 21 6 2.6413 -6.5823 1.1951 22 1 -0.4850 0.8401 0.0004 23 1 2.9188 -3.6478 -0.0020 24 1 0.5887 -4.9740 -0.8904 25 1 0.5906 -4.9744 0.8896 26 1 2.2856 -6.1695 -2.1371 27 1 3.8801 -8.0369 -2.1633 28 1 5.5449 -9.9846 2.1203 29 1 2.2890 -6.1699 2.1290 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258725228.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:36 Heat of formation + Delta-G solvation = -1.726616 kcal Electronic energy + Delta-G solvation = -16428.085001 eV Core-core repulsion = 13510.664072 eV Total energy + Delta-G solvation = -2917.420929 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.28713 -38.61758 -37.01895 -34.92826 -33.29381 -32.31570 -30.70996 -30.00222 -26.85170 -25.08513 -23.67944 -21.97972 -21.80142 -19.72539 -18.02329 -17.58663 -17.12450 -16.71960 -15.74390 -15.31940 -14.69564 -14.37648 -14.06594 -14.01270 -13.30403 -13.11899 -12.47754 -12.33193 -11.82317 -11.62766 -11.42221 -11.31705 -11.11925 -10.93188 -10.56395 -10.47841 -10.21639 -8.88606 -8.84940 -8.53824 -7.63197 -7.58359 -6.21526 -4.67014 0.61869 1.20271 2.34316 2.50249 3.11838 3.20282 3.24760 3.57237 3.82937 4.10274 4.46610 4.55564 4.78698 4.98996 5.06136 5.16595 5.19875 5.34774 5.70865 5.85913 5.94195 6.00438 6.17143 6.21617 6.32353 6.60884 6.64880 7.41360 7.46972 7.87500 8.01619 8.29593 8.99940 9.47499 10.56077 10.74139 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.043033 B = 0.004372 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.500859 B = 6402.767970 C = 6568.976295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.580 6.580 11 N -0.763 5.763 12 C 0.170 3.830 13 C -0.056 4.056 14 C -0.102 4.102 15 C -0.064 4.064 16 C 0.012 3.988 17 N -0.485 5.485 18 C 0.221 3.779 19 O -0.218 6.218 20 C 0.011 3.989 21 C -0.081 4.081 22 H 0.268 0.732 23 H 0.382 0.618 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.141 0.859 27 H 0.135 0.865 28 H 0.253 0.747 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.719 -14.575 1.520 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.420 5.420 12 C 0.046 3.954 13 C -0.057 4.057 14 C -0.121 4.121 15 C -0.083 4.083 16 C -0.099 4.099 17 N -0.214 5.214 18 C -0.010 4.010 19 O -0.109 6.109 20 C -0.039 4.039 21 C -0.100 4.100 22 H 0.079 0.921 23 H 0.214 0.786 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.159 0.841 27 H 0.153 0.847 28 H 0.269 0.731 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.915 -14.824 1.086 16.840 hybrid contribution 0.761 0.967 0.601 1.369 sum 8.676 -13.857 1.687 16.436 Atomic orbital electron populations 1.70026 1.07058 1.27229 1.35309 1.25716 0.94635 1.00332 0.92604 0.86307 0.80493 0.81684 0.78226 1.18768 1.20134 1.20162 1.20906 0.93644 0.89221 1.54257 0.91328 1.18265 0.87212 0.82287 0.76358 1.90607 1.14063 1.86644 1.54944 1.46231 1.08691 1.04051 1.82997 1.19832 0.91769 0.81664 1.02155 1.20093 0.97241 0.96736 0.91605 1.21087 0.96863 0.95623 0.98556 1.20285 0.96673 0.95776 0.95524 1.19840 0.99055 0.96181 0.94867 1.70579 1.18754 1.18559 1.13520 1.28195 0.92851 0.91799 0.88187 1.84520 1.49593 1.40503 1.36318 1.20293 0.99773 0.97469 0.86402 1.19833 0.96550 0.93933 0.99712 0.92110 0.78648 0.91690 0.92010 0.84134 0.84699 0.73124 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.82 11.83 55.55 0.66 -22.17 15 2 C 0.09 2.40 5.50 -17.37 -0.10 2.31 15 3 Si 0.91 19.98 29.56 -169.99 -5.02 14.96 15 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 7 C -0.54 -15.17 9.54 -35.63 -0.34 -15.51 15 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 15 9 C 0.55 15.50 7.75 -12.99 -0.10 15.40 15 10 O -0.58 -18.49 15.02 5.20 0.08 -18.41 15 11 N -0.76 -16.61 5.54 -62.91 -0.35 -16.96 15 12 C 0.17 3.12 5.79 -5.20 -0.03 3.09 15 13 C -0.06 -0.83 5.25 -104.56 -0.55 -1.38 15 14 C -0.10 -1.34 9.67 -39.60 -0.38 -1.72 15 15 C -0.06 -0.82 10.10 -39.28 -0.40 -1.21 15 16 C 0.01 0.16 7.24 -84.71 -0.61 -0.45 15 17 N -0.49 -6.31 11.34 -12.55 -0.14 -6.45 15 18 C 0.22 2.15 13.13 51.95 0.68 2.84 15 19 O -0.22 -2.71 10.77 3.64 0.04 -2.68 15 20 C 0.01 0.15 7.43 -38.64 -0.29 -0.14 15 21 C -0.08 -1.16 9.70 -39.54 -0.38 -1.54 15 22 H 0.27 7.20 8.29 -40.82 -0.34 6.86 15 23 H 0.38 7.48 8.44 -40.82 -0.34 7.13 15 24 H 0.06 1.22 8.08 -51.93 -0.42 0.80 15 25 H 0.06 1.18 8.08 -51.93 -0.42 0.76 15 26 H 0.14 1.66 8.06 -52.49 -0.42 1.23 15 27 H 0.14 1.44 8.06 -52.48 -0.42 1.02 15 28 H 0.25 0.91 8.06 -52.49 -0.42 0.49 15 29 H 0.14 1.87 8.06 -52.49 -0.42 1.44 15 LS Contribution 269.43 15.07 4.06 4.06 Total: -1.00 -35.59 269.43 -5.60 -41.19 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -2.42 Total: 4.78 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.50 Total: 1.67 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.17 Total: -45.57 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.12 Total: -21.08 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -35.59 -5.60 -41.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258725228.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.460 kcal (2) G-P(sol) polarization free energy of solvation -35.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds