Wall clock time and date at job start Mon Mar 30 2020 03:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86794 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47324 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47247 * 300.00033 * 3 2 1 6 6 H 1.48501 * 109.47281 * 59.99875 * 3 2 1 7 7 C 1.40056 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99984 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00266 * 0.02562 * 9 7 2 11 11 N 1.34779 * 120.00057 * 179.97438 * 9 7 2 12 12 C 1.46491 * 120.00311 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.47436 * 180.02562 * 12 11 9 14 14 C 1.38721 * 119.76369 * 269.98262 * 13 12 11 15 15 C 1.37687 * 120.41872 * 180.02562 * 14 13 12 16 16 C 1.39589 * 119.73142 * 0.03901 * 15 14 13 17 17 N 1.36054 * 133.80448 * 179.97438 * 16 15 14 18 18 C 1.29910 * 108.79957 * 179.97438 * 17 16 15 19 19 O 1.34224 * 110.28497 * 0.27100 * 18 17 16 20 20 C 1.35112 * 108.16577 * 359.56020 * 19 18 17 21 21 C 1.37912 * 119.75862 * 90.00107 * 13 12 11 22 22 H 0.97004 * 120.00153 * 359.97438 * 1 2 3 23 23 H 0.97000 * 119.99663 * 0.02562 * 11 9 7 24 24 H 1.09003 * 109.46995 * 60.00416 * 12 11 9 25 25 H 1.09000 * 109.47642 * 300.01068 * 12 11 9 26 26 H 1.07995 * 119.78942 * 0.02562 * 14 13 12 27 27 H 1.08005 * 120.13042 * 179.97438 * 15 14 13 28 28 H 1.08002 * 124.85387 * 179.97438 * 18 17 16 29 29 H 1.07995 * 120.06587 * 0.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9488 -3.6478 -0.0016 12 6 1.2164 -4.9164 -0.0010 13 6 2.1956 -6.0619 -0.0018 14 6 2.6419 -6.5856 -1.2063 15 6 3.5360 -7.6325 -1.2228 16 6 3.9950 -8.1698 -0.0190 17 7 4.8543 -9.1765 0.2961 18 6 4.9345 -9.2691 1.5894 19 8 4.1451 -8.3527 2.1714 20 6 3.5414 -7.6371 1.1972 21 6 2.6413 -6.5823 1.1951 22 1 -0.4850 0.8401 0.0004 23 1 2.9188 -3.6478 -0.0020 24 1 0.5887 -4.9740 -0.8904 25 1 0.5906 -4.9744 0.8896 26 1 2.2856 -6.1695 -2.1371 27 1 3.8801 -8.0369 -2.1633 28 1 5.5449 -9.9846 2.1203 29 1 2.2890 -6.1699 2.1290 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258725228.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:35 Heat of formation + Delta-G solvation = -30.193636 kcal Electronic energy + Delta-G solvation = -16429.319424 eV Core-core repulsion = 13510.664072 eV Total energy + Delta-G solvation = -2918.655352 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.24345 -39.96764 -38.83281 -36.02487 -35.02018 -34.36641 -31.79985 -31.35028 -28.69661 -26.61771 -24.71170 -23.10399 -22.86685 -21.71217 -19.51811 -18.75583 -18.42214 -17.69159 -17.47184 -16.85276 -16.07315 -15.82551 -15.78535 -15.06688 -14.80623 -14.51251 -14.21011 -13.53067 -13.29909 -13.13441 -12.94790 -12.74495 -12.62568 -12.49750 -12.44771 -11.97446 -11.54527 -10.94392 -10.01741 -9.85615 -9.51611 -9.47289 -8.28906 -6.85348 -0.38469 0.14132 1.39679 1.41057 1.42512 1.58800 1.59583 2.25184 2.47060 2.49458 3.05577 3.29544 3.46151 3.60940 3.66185 3.96719 4.12559 4.17895 4.34030 4.62031 4.75597 4.90087 4.91711 5.14724 5.23421 5.33030 5.44430 5.57589 5.87143 6.17682 6.25600 6.54213 6.87267 7.51668 8.47885 8.66906 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.043033 B = 0.004372 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.500859 B = 6402.767970 C = 6568.976295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.571 4.571 8 H 0.087 0.913 9 C 0.539 3.461 10 O -0.630 6.630 11 N -0.750 5.750 12 C 0.177 3.823 13 C -0.067 4.067 14 C -0.097 4.097 15 C -0.064 4.064 16 C 0.004 3.996 17 N -0.519 5.519 18 C 0.250 3.750 19 O -0.225 6.225 20 C -0.009 4.009 21 C -0.081 4.081 22 H 0.275 0.725 23 H 0.394 0.606 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.153 0.847 27 H 0.157 0.843 28 H 0.310 0.690 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.210 -15.215 1.693 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.171 1.171 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.608 4.608 8 H 0.105 0.895 9 C 0.344 3.656 10 O -0.518 6.518 11 N -0.405 5.405 12 C 0.053 3.947 13 C -0.067 4.067 14 C -0.117 4.117 15 C -0.083 4.083 16 C -0.106 4.106 17 N -0.247 5.247 18 C 0.020 3.980 19 O -0.116 6.116 20 C -0.059 4.059 21 C -0.100 4.100 22 H 0.085 0.915 23 H 0.228 0.772 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.171 0.829 27 H 0.175 0.825 28 H 0.325 0.675 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.454 -15.518 1.252 18.753 hybrid contribution 0.060 0.964 0.612 1.143 sum 10.514 -14.554 1.864 18.051 Atomic orbital electron populations 1.70184 1.09474 1.28933 1.36446 1.26965 0.95538 1.04926 0.91242 0.84969 0.79307 0.75457 0.78541 1.17108 1.19287 1.19397 1.21440 0.94707 0.90001 1.54615 0.89535 1.18598 0.86812 0.84147 0.76052 1.90561 1.16117 1.87834 1.57245 1.45865 1.09239 1.04054 1.81317 1.19765 0.92329 0.81445 1.01181 1.19663 0.97863 0.96448 0.92765 1.21173 0.96617 0.95583 0.98294 1.20503 0.96180 0.95332 0.96265 1.20182 0.98936 0.96316 0.95170 1.70622 1.19814 1.19108 1.15195 1.29560 0.90550 0.90261 0.87637 1.84543 1.49938 1.40906 1.36251 1.20291 1.00463 0.98006 0.87104 1.19800 0.96562 0.94134 0.99515 0.91514 0.77228 0.92407 0.93281 0.82933 0.82511 0.67527 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.02 11.83 21.84 0.26 -49.76 15 2 C 0.03 1.58 5.50 85.31 0.47 2.05 15 3 Si 1.00 40.73 29.56 68.60 2.03 42.76 15 4 H -0.25 -9.39 7.11 99.48 0.71 -8.68 15 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 6 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 7 C -0.57 -32.17 9.54 24.83 0.24 -31.93 15 8 H 0.09 4.39 7.85 -2.91 -0.02 4.37 15 9 C 0.54 31.02 7.75 86.36 0.67 31.69 15 10 O -0.63 -41.90 15.02 -4.32 -0.06 -41.96 15 11 N -0.75 -33.27 5.54 -471.16 -2.61 -35.89 15 12 C 0.18 6.68 5.79 85.63 0.50 7.18 15 13 C -0.07 -1.97 5.25 -19.83 -0.10 -2.08 15 14 C -0.10 -2.48 9.67 22.25 0.22 -2.26 15 15 C -0.06 -1.54 10.10 22.47 0.23 -1.32 15 16 C 0.00 0.12 7.24 39.32 0.28 0.40 15 17 N -0.52 -12.15 11.34 -308.43 -3.50 -15.64 15 18 C 0.25 4.00 13.13 130.53 1.71 5.72 15 19 O -0.22 -5.08 10.77 -9.87 -0.11 -5.19 15 20 C -0.01 -0.23 7.43 22.88 0.17 -0.06 15 21 C -0.08 -2.30 9.70 22.30 0.22 -2.08 15 22 H 0.27 15.10 8.29 -92.71 -0.77 14.33 15 23 H 0.39 15.46 8.44 -92.71 -0.78 14.68 15 24 H 0.06 2.26 8.08 -2.39 -0.02 2.24 15 25 H 0.05 1.97 8.08 -2.39 -0.02 1.95 15 26 H 0.15 3.45 8.06 -2.91 -0.02 3.43 15 27 H 0.16 3.01 8.06 -2.91 -0.02 2.98 15 28 H 0.31 0.59 8.06 -2.91 -0.02 0.57 15 29 H 0.14 3.80 8.06 -2.91 -0.02 3.77 15 Total: -1.00 -79.44 269.43 1.01 -78.43 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.41 Total: 19.95 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 4.59 Total: 7.30 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -5.85 Total: -101.29 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -0.17 Total: -47.15 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -79.44 1.01 -78.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258725228.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.234 kcal (2) G-P(sol) polarization free energy of solvation -79.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds