Wall clock time and date at job start Mon Mar 30 2020 03:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48493 * 109.46859 * 150.00112 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 11 11 N 1.30147 * 125.07824 * 90.02945 * 10 9 7 12 12 C 1.34948 * 109.73152 * 179.97438 * 11 10 9 13 13 C 1.41798 * 126.51006 * 180.02562 * 12 11 10 14 14 O 1.21705 * 119.99915 * 179.97438 * 13 12 11 15 15 O 1.34972 * 120.00313 * 359.97244 * 13 12 11 16 16 C 1.40253 * 106.97907 * 359.97438 * 12 11 10 17 17 C 1.40127 * 133.57069 * 179.97438 * 16 12 11 18 18 C 1.36369 * 119.20090 * 179.97438 * 17 16 12 19 19 C 1.40364 * 119.54714 * 0.02562 * 18 17 16 20 20 C 1.35057 * 120.43362 * 359.97438 * 19 18 17 21 21 N 1.36285 * 125.07756 * 269.71739 * 10 9 7 22 22 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46670 * 60.00337 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 0.96701 * 113.99978 * 180.02562 * 15 13 12 26 26 H 1.08002 * 120.40504 * 0.02562 * 17 16 12 27 27 H 1.08004 * 120.22645 * 179.97438 * 18 17 16 28 28 H 1.07996 * 119.78365 * 180.02562 * 19 18 17 29 29 H 1.08001 * 119.69730 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 7 2.7162 -4.2134 1.0645 12 6 3.5616 -5.2027 0.7074 13 6 4.2855 -6.0510 1.5832 14 8 5.0190 -6.9100 1.1301 15 8 4.1611 -5.9060 2.9193 16 6 3.5874 -5.2332 -0.6946 17 6 4.2648 -6.0254 -1.6311 18 6 4.0688 -5.7975 -2.9612 19 6 3.1953 -4.7765 -3.3671 20 6 2.5508 -4.0228 -2.4502 21 7 2.7353 -4.2434 -1.1158 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 4.6929 -6.5286 3.4337 26 1 4.9335 -6.8077 -1.3035 27 1 4.5827 -6.3979 -3.6973 28 1 3.0369 -4.5929 -4.4195 29 1 1.8811 -3.2406 -2.7758 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259271243.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:51 Heat of formation + Delta-G solvation = -36.031322 kcal Electronic energy + Delta-G solvation = -17031.174132 eV Core-core repulsion = 14112.265639 eV Total energy + Delta-G solvation = -2918.908493 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.96999 -40.94030 -38.54637 -37.02003 -35.56756 -34.41886 -32.44935 -31.23795 -29.05773 -26.00088 -25.24097 -24.73880 -22.00118 -21.87281 -19.40224 -18.70425 -18.38945 -17.58599 -17.23453 -17.18975 -16.69294 -16.30544 -16.17726 -15.39992 -14.81390 -14.41076 -14.22101 -13.63340 -13.20521 -13.13154 -12.82573 -12.65166 -12.60617 -12.51353 -12.04278 -11.80809 -11.78090 -11.52489 -11.43235 -10.66091 -10.41593 -8.61902 -8.22554 -6.40456 -0.46050 0.02783 1.01681 1.38767 1.41982 1.46105 1.52952 2.20807 2.39276 2.41255 2.49573 3.05023 3.41555 3.46244 3.76963 3.83327 3.99519 4.16215 4.56589 4.73674 4.80833 5.04459 5.07265 5.18384 5.21758 5.38409 5.46792 5.60594 5.63378 5.94027 6.12777 6.65195 6.68436 7.08769 7.28502 8.82498 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.007350 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.264993 B = 3808.389031 C = 4629.943921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.534 4.534 8 H 0.044 0.956 9 C 0.112 3.888 10 C 0.200 3.800 11 N -0.437 5.437 12 C -0.143 4.143 13 C 0.580 3.420 14 O -0.547 6.547 15 O -0.497 6.497 16 C 0.091 3.909 17 C -0.117 4.117 18 C -0.062 4.062 19 C -0.125 4.125 20 C 0.051 3.949 21 N -0.361 5.361 22 H 0.270 0.730 23 H 0.038 0.962 24 H 0.027 0.973 25 H 0.424 0.576 26 H 0.163 0.837 27 H 0.193 0.807 28 H 0.202 0.798 29 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.229 -10.582 -8.662 15.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.063 0.937 9 C 0.073 3.927 10 C -0.060 4.060 11 N -0.152 5.152 12 C -0.270 4.270 13 C 0.428 3.572 14 O -0.440 6.440 15 O -0.308 6.308 16 C -0.025 4.025 17 C -0.136 4.136 18 C -0.083 4.083 19 C -0.145 4.145 20 C -0.071 4.071 21 N -0.030 5.030 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.283 0.717 26 H 0.180 0.820 27 H 0.210 0.790 28 H 0.219 0.781 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.746 -10.120 -8.052 14.586 hybrid contribution 0.541 0.468 0.258 0.760 sum 7.287 -9.652 -7.794 14.388 Atomic orbital electron populations 1.70023 1.07297 1.28424 1.50024 1.25729 0.95717 1.02530 0.93986 0.85460 0.78256 0.78532 0.78891 1.18787 1.20242 1.20217 1.21088 0.92598 0.90827 1.52763 0.93735 1.17558 0.90407 0.86505 0.98231 1.24267 1.03164 0.99964 0.78636 1.70128 1.09368 1.06973 1.28687 1.18594 1.11969 1.06198 0.90222 1.17590 0.77959 0.80188 0.81436 1.90833 1.39499 1.35482 1.78187 1.85165 1.67213 1.60459 1.17914 1.19681 0.95697 0.93145 0.93936 1.20931 1.00580 0.99929 0.92159 1.21890 0.95307 0.96027 0.95120 1.21564 0.96383 0.94964 1.01578 1.22567 1.02708 1.02585 0.79278 1.43234 1.28943 1.22939 1.07879 0.92061 0.94433 0.95523 0.71675 0.81988 0.79007 0.78080 0.80288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.28 13.29 21.45 0.28 -51.99 15 2 C 0.02 1.12 5.46 84.65 0.46 1.58 15 3 Si 0.96 42.98 29.54 68.60 2.03 45.01 15 4 H -0.26 -10.98 7.11 99.48 0.71 -10.28 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 15 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 7 C -0.53 -29.85 9.09 25.60 0.23 -29.62 15 8 H 0.04 2.55 7.74 -2.91 -0.02 2.53 15 9 C 0.11 5.87 5.41 29.10 0.16 6.02 15 10 C 0.20 9.56 7.13 137.83 0.98 10.54 15 11 N -0.44 -21.70 11.20 -178.90 -2.00 -23.70 15 12 C -0.14 -6.19 6.88 40.03 0.28 -5.91 15 13 C 0.58 22.19 8.09 68.70 0.56 22.74 15 14 O -0.55 -20.26 16.33 19.17 0.31 -19.95 15 15 O -0.50 -16.51 13.52 -58.90 -0.80 -17.31 15 16 C 0.09 3.41 6.70 39.25 0.26 3.67 15 17 C -0.12 -3.17 9.69 22.29 0.22 -2.95 15 18 C -0.06 -1.10 10.08 22.35 0.23 -0.88 15 19 C -0.13 -2.30 9.98 22.05 0.22 -2.08 15 20 C 0.05 1.47 10.77 83.23 0.90 2.37 15 21 N -0.36 -14.07 2.94 -337.17 -0.99 -15.06 15 22 H 0.27 14.38 8.31 -92.71 -0.77 13.61 15 23 H 0.04 1.91 7.98 -2.39 -0.02 1.89 15 24 H 0.03 1.53 8.14 -2.39 -0.02 1.51 15 25 H 0.42 8.53 8.98 -74.06 -0.67 7.86 15 26 H 0.16 4.11 7.11 -2.91 -0.02 4.09 15 27 H 0.19 1.52 8.06 -2.91 -0.02 1.50 15 28 H 0.20 1.71 8.06 -2.91 -0.02 1.69 15 29 H 0.18 4.85 7.93 -2.91 -0.02 4.83 15 Total: -1.00 -75.22 269.73 3.85 -71.36 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 0.53 Total: 6.15 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 4.49 Total: 5.48 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -2.71 Total: -90.76 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.48 Total: -37.25 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -75.22 3.85 -71.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259271243.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.330 kcal (2) G-P(sol) polarization free energy of solvation -75.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds