Wall clock time and date at job start Mon Mar 30 2020 04:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34905 * 116.99908 * 2 1 4 4 O 1.21611 * 119.99940 * 359.97438 * 3 2 1 5 5 C 1.46838 * 120.00278 * 180.02562 * 3 2 1 6 6 N 1.33425 * 126.19343 * 0.02562 * 5 3 2 7 7 C 1.32842 * 109.69446 * 180.02562 * 6 5 3 8 8 C 1.39617 * 125.43093 * 179.97438 * 7 6 5 9 9 H 1.07994 * 120.00598 * 174.17550 * 8 7 6 10 10 C 1.40082 * 119.99964 * 354.17151 * 8 7 6 11 11 N 1.30815 * 119.99454 * 6.08965 * 10 8 7 12 12 Si 1.86793 * 120.00268 * 186.08738 * 10 8 7 13 13 H 1.48499 * 109.47279 * 94.98367 * 12 10 8 14 14 H 1.48501 * 109.47059 * 214.98384 * 12 10 8 15 15 H 1.48505 * 109.47025 * 334.98517 * 12 10 8 16 16 N 1.38206 * 109.14320 * 0.02562 * 7 6 5 17 17 C 1.35926 * 132.66940 * 180.02562 * 16 7 6 18 18 C 1.35581 * 120.73518 * 179.21146 * 17 16 7 19 19 C 1.39934 * 120.26037 * 0.63984 * 18 17 16 20 20 C 1.37977 * 119.33454 * 359.59451 * 19 18 17 21 21 C 1.36998 * 106.96818 * 359.72756 * 16 7 6 22 22 H 1.08991 * 109.47414 * 60.00316 * 1 2 3 23 23 H 1.09007 * 109.47084 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47198 * 299.99905 * 1 2 3 25 25 H 0.97003 * 119.99460 * 179.97438 * 11 10 8 26 26 H 1.08006 * 119.63044 * 359.95182 * 17 16 7 27 27 H 1.07996 * 119.86863 * 180.21326 * 18 17 16 28 28 H 1.07998 * 120.33226 * 179.61205 * 19 18 17 29 29 H 1.07997 * 120.43800 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5307 1.2790 -0.0006 6 7 4.3740 0.2450 -0.0016 7 6 5.6262 0.6884 -0.0013 8 6 6.7689 -0.1137 -0.0016 9 1 7.7455 0.3376 -0.0962 10 6 6.6488 -1.5040 0.1209 11 7 5.4652 -2.0611 0.1157 12 14 8.1786 -2.5622 0.2916 13 1 8.4481 -2.8143 1.7300 14 1 7.9661 -3.8557 -0.4063 15 1 9.3377 -1.8579 -0.3132 16 7 5.6175 2.0705 0.0006 17 6 6.6111 2.9980 0.0012 18 6 6.3225 4.3226 -0.0129 19 6 4.9914 4.7544 -0.0147 20 6 3.9774 3.8187 -0.0107 21 6 4.3047 2.4621 -0.0048 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 5.3821 -3.0238 0.2001 26 1 7.6421 2.6761 0.0008 27 1 7.1231 5.0475 -0.0157 28 1 4.7602 5.8093 -0.0196 29 1 2.9438 4.1321 -0.0116 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259372524.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:43 Heat of formation + Delta-G solvation = -22.402117 kcal Electronic energy + Delta-G solvation = -17244.395855 eV Core-core repulsion = 14326.078369 eV Total energy + Delta-G solvation = -2918.317486 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.02692 -40.94200 -37.92522 -37.27887 -35.32171 -33.93282 -31.43797 -30.23465 -28.80174 -27.07876 -24.55460 -24.30631 -22.68479 -21.41981 -19.34009 -18.73740 -17.84250 -17.29142 -17.27388 -16.85413 -16.37374 -16.21146 -16.00910 -15.14797 -14.83920 -14.32573 -14.17884 -13.32315 -13.12716 -13.00275 -12.88876 -12.58351 -12.45501 -12.34359 -11.87556 -11.70967 -11.57624 -11.39976 -11.05046 -10.36014 -9.93345 -8.61546 -8.43446 -6.28140 -0.10558 0.36519 1.28937 1.45327 1.60650 1.61345 1.82458 2.16734 2.38141 2.50332 2.84176 3.43304 3.79567 3.96746 4.12653 4.24885 4.31234 4.33508 4.34164 4.41190 4.63030 4.92575 5.09166 5.26684 5.30694 5.36303 5.44391 5.54277 5.90365 6.10206 6.17786 6.76852 6.88219 7.00711 7.78685 8.52046 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.009961 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.776849 B = 2810.287235 C = 4407.661612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.555 3.445 4 O -0.547 6.547 5 C -0.113 4.113 6 N -0.474 5.474 7 C 0.314 3.686 8 C -0.475 4.475 9 H 0.104 0.896 10 C 0.028 3.972 11 N -0.785 5.785 12 Si 1.002 2.998 13 H -0.266 1.266 14 H -0.273 1.273 15 H -0.247 1.247 16 N -0.403 5.403 17 C 0.062 3.938 18 C -0.160 4.160 19 C -0.105 4.105 20 C -0.111 4.111 21 C 0.011 3.989 22 H 0.064 0.936 23 H 0.127 0.873 24 H 0.064 0.936 25 H 0.281 0.719 26 H 0.178 0.822 27 H 0.188 0.812 28 H 0.172 0.828 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 7.131 0.121 7.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.404 3.596 4 O -0.441 6.441 5 C -0.244 4.244 6 N -0.193 5.193 7 C 0.073 3.927 8 C -0.515 4.515 9 H 0.122 0.878 10 C -0.192 4.192 11 N -0.411 5.411 12 Si 0.822 3.178 13 H -0.191 1.191 14 H -0.198 1.198 15 H -0.170 1.170 16 N -0.077 5.077 17 C -0.061 4.061 18 C -0.181 4.181 19 C -0.126 4.126 20 C -0.131 4.131 21 C -0.101 4.101 22 H 0.083 0.917 23 H 0.145 0.855 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.195 0.805 27 H 0.206 0.794 28 H 0.189 0.811 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.258 6.272 0.122 6.398 hybrid contribution 0.098 0.017 0.068 0.120 sum 1.356 6.289 0.190 6.437 Atomic orbital electron populations 1.23533 0.74941 1.05353 1.02538 1.86761 1.24792 1.32045 1.84078 1.19691 0.86863 0.81162 0.71864 1.90674 1.66547 1.36153 1.50714 1.19784 0.91265 0.90323 1.22994 1.71160 0.98386 1.26276 1.23520 1.20778 0.94098 0.76383 1.01398 1.18560 0.91172 0.91617 1.50108 0.87793 1.26839 1.00783 0.99022 0.92527 1.70204 1.26264 1.12469 1.32119 0.84897 0.76874 0.76942 0.79095 1.19086 1.19834 1.16999 1.43414 1.06061 1.08206 1.50064 1.22307 0.94006 0.89313 1.00483 1.21208 0.98586 0.93444 1.04815 1.21762 0.91600 1.00585 0.98695 1.20903 1.01459 0.88403 1.02305 1.19196 0.84547 0.94814 1.11516 0.91687 0.85467 0.91718 0.90882 0.80475 0.79440 0.81063 0.84298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 10.57 113.37 1.20 2.16 15 2 O -0.36 -17.12 10.58 -58.20 -0.62 -17.74 15 3 C 0.55 28.35 7.94 70.07 0.56 28.90 15 4 O -0.55 -26.71 15.51 19.47 0.30 -26.41 15 5 C -0.11 -6.31 7.09 41.93 0.30 -6.02 15 6 N -0.47 -28.72 9.34 -181.44 -1.69 -30.41 15 7 C 0.31 17.60 7.45 133.32 0.99 18.59 15 8 C -0.48 -24.92 9.17 23.05 0.21 -24.71 15 9 H 0.10 4.78 7.64 -2.91 -0.02 4.76 15 10 C 0.03 1.44 5.49 85.29 0.47 1.91 15 11 N -0.79 -44.12 11.88 21.85 0.26 -43.86 15 12 Si 1.00 37.47 29.57 68.60 2.03 39.50 15 13 H -0.27 -9.67 7.11 99.48 0.71 -8.96 15 14 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 15 H -0.25 -8.46 7.11 99.48 0.71 -7.76 15 16 N -0.40 -19.27 2.97 -344.35 -1.02 -20.29 15 17 C 0.06 2.21 10.77 83.44 0.90 3.11 15 18 C -0.16 -4.33 9.99 22.07 0.22 -4.11 15 19 C -0.10 -3.02 10.15 22.62 0.23 -2.79 15 20 C -0.11 -4.37 9.78 22.53 0.22 -4.15 15 21 C 0.01 0.56 6.72 39.43 0.27 0.83 15 22 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.13 3.21 8.14 -2.38 -0.02 3.19 15 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 15 25 H 0.28 14.33 8.30 -92.71 -0.77 13.56 15 26 H 0.18 5.22 7.84 -2.91 -0.02 5.19 15 27 H 0.19 3.10 8.06 -2.91 -0.02 3.07 15 28 H 0.17 3.35 8.06 -2.91 -0.02 3.33 15 29 H 0.14 5.34 7.13 -2.91 -0.02 5.32 15 Total: -1.00 -75.18 267.71 6.00 -69.18 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.18 Total: 16.31 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 5.56 Total: 13.72 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -2.46 Total: -94.57 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.31 Total: -44.15 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Total: -75.18 6.00 -69.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259372524.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.782 kcal (2) G-P(sol) polarization free energy of solvation -75.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds