Wall clock time and date at job start Mon Mar 30 2020 03:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99803 * 2 1 4 4 H 1.48492 * 109.46997 * 269.99951 * 3 2 1 5 5 H 1.48497 * 109.47244 * 30.00065 * 3 2 1 6 6 H 1.48501 * 109.46540 * 149.99997 * 3 2 1 7 7 C 1.37874 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99830 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99999 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.46851 * 179.97438 * 9 7 2 11 11 C 1.35615 * 119.82872 * 90.00136 * 10 9 7 12 12 O 1.34769 * 118.45926 * 359.97438 * 11 10 9 13 13 N 1.31328 * 123.07899 * 179.72197 * 11 10 9 14 14 C 1.34209 * 121.74386 * 0.27377 * 13 11 10 15 15 O 1.21941 * 120.84434 * 180.02562 * 14 13 11 16 16 C 1.47484 * 118.31695 * 0.02562 * 14 13 11 17 17 C 1.39272 * 121.92722 * 180.02562 * 16 14 13 18 18 C 1.37826 * 119.48110 * 180.02562 * 17 16 14 19 19 C 1.38744 * 120.46443 * 359.95751 * 18 17 16 20 20 C 1.37929 * 120.66091 * 0.02562 * 19 18 17 21 21 C 1.38281 * 119.82897 * 270.26593 * 10 9 7 22 22 H 0.97006 * 119.99803 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47196 * 59.99426 * 9 7 2 24 24 H 1.09006 * 109.46911 * 299.99237 * 9 7 2 25 25 H 0.96700 * 117.00462 * 269.74234 * 12 11 10 26 26 H 1.07999 * 120.26231 * 359.97050 * 17 16 14 27 27 H 1.08005 * 119.76951 * 179.97438 * 18 17 16 28 28 H 1.07999 * 119.66662 * 180.02562 * 19 18 17 29 29 H 1.07997 * 120.15297 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9998 -2.5752 -0.0001 11 6 4.2251 -3.2109 -1.1766 12 8 3.9890 -2.5429 -2.3230 13 7 4.6672 -4.4453 -1.2512 14 6 4.9237 -5.1711 -0.1518 15 8 5.3343 -6.3159 -0.2401 16 6 4.6965 -4.5490 1.1660 17 6 4.9382 -5.2329 2.3549 18 6 4.7079 -4.6027 3.5588 19 6 4.2396 -3.2971 3.5911 20 6 3.9963 -2.6080 2.4213 21 6 4.2234 -3.2258 1.1995 22 1 -0.4850 0.8401 0.0004 23 1 3.8745 -0.6807 0.8904 24 1 3.8752 -0.6796 -0.8896 25 1 3.1010 -2.6159 -2.6988 26 1 5.3025 -6.2494 2.3336 27 1 4.8934 -5.1289 4.4836 28 1 4.0640 -2.8156 4.5417 29 1 3.6315 -1.5921 2.4560 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259451017.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:44 Heat of formation + Delta-G solvation = -14.062180 kcal Electronic energy + Delta-G solvation = -17454.235915 eV Core-core repulsion = 14536.280076 eV Total energy + Delta-G solvation = -2917.955839 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.17251 -38.46232 -37.73258 -35.99298 -34.07808 -32.68304 -30.73831 -30.05363 -28.23548 -24.04386 -23.77771 -23.27562 -20.91583 -19.28925 -18.70649 -17.59119 -17.45467 -16.37264 -15.59306 -15.27547 -14.57774 -14.43188 -14.12411 -13.99116 -13.70084 -13.05069 -12.82389 -12.34350 -12.04415 -11.93664 -11.86745 -11.26340 -11.03147 -10.93895 -10.46580 -10.32363 -9.92825 -9.44582 -9.03861 -8.88679 -8.83525 -7.68505 -6.51963 -4.60405 0.91051 1.13685 1.91283 2.65492 2.98960 3.05147 3.10234 3.42454 3.84591 3.99781 4.35270 4.64866 4.77523 4.89558 5.01303 5.13944 5.38669 5.49104 5.70248 5.93810 6.04556 6.13652 6.25945 6.39822 6.57795 6.73825 6.89274 6.97389 7.11740 7.69300 7.96739 8.18963 8.46198 8.49710 9.02012 10.59253 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024442 B = 0.008765 C = 0.007056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.301747 B = 3193.772726 C = 3967.144261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.087 3.913 3 Si 0.873 3.127 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.189 3.811 10 N -0.492 5.492 11 C 0.637 3.363 12 O -0.474 6.474 13 N -0.624 5.624 14 C 0.548 3.452 15 O -0.511 6.511 16 C -0.222 4.222 17 C -0.033 4.033 18 C -0.160 4.160 19 C -0.065 4.065 20 C -0.144 4.144 21 C 0.201 3.799 22 H 0.272 0.728 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.434 0.566 26 H 0.137 0.863 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 -0.725 4.952 8.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.120 4.120 3 Si 0.698 3.302 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.597 4.597 8 H 0.099 0.901 9 C 0.069 3.931 10 N -0.199 5.199 11 C 0.334 3.666 12 O -0.281 6.281 13 N -0.381 5.381 14 C 0.336 3.664 15 O -0.388 6.388 16 C -0.230 4.230 17 C -0.052 4.052 18 C -0.179 4.179 19 C -0.084 4.084 20 C -0.165 4.165 21 C 0.099 3.901 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.299 0.701 26 H 0.154 0.846 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.991 -1.418 4.245 8.301 hybrid contribution -0.516 1.416 0.571 1.612 sum 6.475 -0.002 4.816 8.070 Atomic orbital electron populations 1.69862 1.06259 1.27874 1.47270 1.24793 0.94762 0.98955 0.93468 0.86902 0.80287 0.83562 0.79415 1.19340 1.20427 1.18829 1.21077 0.87583 0.95616 1.55454 0.90103 1.20413 0.97273 0.75394 1.00049 1.45462 1.54271 1.16796 1.03348 1.19920 0.82963 0.83826 0.79846 1.83914 1.39455 1.70371 1.34405 1.69057 1.31442 1.04160 1.33393 1.18641 0.77090 0.87073 0.83593 1.90731 1.43155 1.17020 1.87887 1.21030 1.09546 0.94225 0.98192 1.20976 0.94411 0.99444 0.90414 1.21104 1.03468 0.95576 0.97784 1.21164 0.95316 0.94158 0.97751 1.20909 1.03718 1.02004 0.89819 1.17950 0.95345 0.90807 0.86001 0.91760 0.93009 0.92477 0.70112 0.84563 0.85463 0.85103 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.33 13.96 55.43 0.77 -22.56 15 2 C 0.09 2.10 5.47 -17.82 -0.10 2.01 15 3 Si 0.87 17.83 27.47 -169.99 -4.67 13.16 15 4 H -0.27 -5.44 7.11 56.52 0.40 -5.03 15 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 6 H -0.26 -5.05 6.54 56.52 0.37 -4.68 15 7 C -0.56 -13.13 9.94 -34.44 -0.34 -13.47 15 8 H 0.08 2.16 8.06 -52.49 -0.42 1.73 15 9 C 0.19 3.72 3.69 -5.19 -0.02 3.70 15 10 N -0.49 -9.44 2.66 -117.47 -0.31 -9.75 15 11 C 0.64 12.16 8.49 -89.16 -0.76 11.40 15 12 O -0.47 -7.72 12.11 -16.05 -0.19 -7.91 15 13 N -0.62 -13.13 10.44 -14.62 -0.15 -13.29 15 14 C 0.55 11.76 7.96 -12.75 -0.10 11.66 15 15 O -0.51 -11.92 17.46 4.97 0.09 -11.83 15 16 C -0.22 -4.16 5.89 -104.87 -0.62 -4.78 15 17 C -0.03 -0.52 9.67 -39.35 -0.38 -0.90 15 18 C -0.16 -2.07 10.02 -39.54 -0.40 -2.47 15 19 C -0.06 -0.86 10.02 -39.51 -0.40 -1.25 15 20 C -0.14 -2.33 9.23 -39.49 -0.36 -2.70 15 21 C 0.20 3.72 6.52 -83.88 -0.55 3.17 15 22 H 0.27 6.78 8.31 -40.82 -0.34 6.44 15 23 H 0.05 0.98 5.37 -51.93 -0.28 0.70 15 24 H 0.06 1.09 6.73 -51.93 -0.35 0.74 15 25 H 0.43 5.31 9.15 45.56 0.42 5.72 15 26 H 0.14 1.99 7.82 -52.49 -0.41 1.58 15 27 H 0.13 1.23 8.06 -52.48 -0.42 0.81 15 28 H 0.13 1.31 8.06 -52.49 -0.42 0.89 15 29 H 0.15 2.35 6.33 -52.49 -0.33 2.02 15 LS Contribution 259.63 15.07 3.91 3.91 Total: -1.00 -30.38 259.63 -5.96 -36.35 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -1.39 Total: 5.54 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -4.02 Total: 6.38 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.31 Total: -45.59 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.11 Total: -19.74 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -4.67 Total: 13.16 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.38 -5.96 -36.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259451017.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.285 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds