Wall clock time and date at job start Mon Mar 30 2020 03:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99803 * 2 1 4 4 H 1.48492 * 109.46997 * 269.99951 * 3 2 1 5 5 H 1.48497 * 109.47244 * 30.00065 * 3 2 1 6 6 H 1.48501 * 109.46540 * 149.99997 * 3 2 1 7 7 C 1.37874 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99830 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99999 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.46851 * 179.97438 * 9 7 2 11 11 C 1.35615 * 119.82872 * 90.00136 * 10 9 7 12 12 O 1.34769 * 118.45926 * 359.97438 * 11 10 9 13 13 N 1.31328 * 123.07899 * 179.72197 * 11 10 9 14 14 C 1.34209 * 121.74386 * 0.27377 * 13 11 10 15 15 O 1.21941 * 120.84434 * 180.02562 * 14 13 11 16 16 C 1.47484 * 118.31695 * 0.02562 * 14 13 11 17 17 C 1.39272 * 121.92722 * 180.02562 * 16 14 13 18 18 C 1.37826 * 119.48110 * 180.02562 * 17 16 14 19 19 C 1.38744 * 120.46443 * 359.95751 * 18 17 16 20 20 C 1.37929 * 120.66091 * 0.02562 * 19 18 17 21 21 C 1.38281 * 119.82897 * 270.26593 * 10 9 7 22 22 H 0.97006 * 119.99803 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47196 * 59.99426 * 9 7 2 24 24 H 1.09006 * 109.46911 * 299.99237 * 9 7 2 25 25 H 0.96700 * 117.00462 * 269.74234 * 12 11 10 26 26 H 1.07999 * 120.26231 * 359.97050 * 17 16 14 27 27 H 1.08005 * 119.76951 * 179.97438 * 18 17 16 28 28 H 1.07999 * 119.66662 * 180.02562 * 19 18 17 29 29 H 1.07997 * 120.15297 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9998 -2.5752 -0.0001 11 6 4.2251 -3.2109 -1.1766 12 8 3.9890 -2.5429 -2.3230 13 7 4.6672 -4.4453 -1.2512 14 6 4.9237 -5.1711 -0.1518 15 8 5.3343 -6.3159 -0.2401 16 6 4.6965 -4.5490 1.1660 17 6 4.9382 -5.2329 2.3549 18 6 4.7079 -4.6027 3.5588 19 6 4.2396 -3.2971 3.5911 20 6 3.9963 -2.6080 2.4213 21 6 4.2234 -3.2258 1.1995 22 1 -0.4850 0.8401 0.0004 23 1 3.8745 -0.6807 0.8904 24 1 3.8752 -0.6796 -0.8896 25 1 3.1010 -2.6159 -2.6988 26 1 5.3025 -6.2494 2.3336 27 1 4.8934 -5.1289 4.4836 28 1 4.0640 -2.8156 4.5417 29 1 3.6315 -1.5921 2.4560 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259451017.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:43 Heat of formation + Delta-G solvation = -38.430538 kcal Electronic energy + Delta-G solvation = -17455.292606 eV Core-core repulsion = 14536.280076 eV Total energy + Delta-G solvation = -2919.012531 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.60304 -39.84745 -39.22212 -37.33922 -35.73025 -34.44660 -32.00113 -31.40758 -29.88560 -25.54455 -25.14631 -24.81552 -22.33657 -20.66656 -20.12834 -19.30706 -18.88730 -17.85705 -17.10241 -16.78322 -16.09843 -15.79021 -15.53431 -15.31379 -15.06190 -14.62254 -14.51936 -13.83897 -13.41739 -13.34798 -13.08696 -12.76630 -12.52781 -12.25674 -12.05586 -11.89574 -11.75566 -10.88584 -10.88138 -10.37944 -10.12930 -9.09763 -8.38812 -6.52093 -0.47974 -0.15214 0.58568 1.20285 1.41130 1.43688 1.51141 2.08330 2.28632 2.43754 2.93525 2.95125 3.27060 3.60032 3.66305 3.97511 4.26640 4.29407 4.38785 4.52679 4.62593 4.88633 4.93950 5.19097 5.20968 5.39919 5.42152 5.55501 5.87207 6.07754 6.37242 6.53526 6.66708 6.95017 7.14365 8.76032 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024442 B = 0.008765 C = 0.007056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.301747 B = 3193.772726 C = 3967.144261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.036 3.964 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.236 1.236 7 C -0.551 4.551 8 H 0.035 0.965 9 C 0.197 3.803 10 N -0.492 5.492 11 C 0.639 3.361 12 O -0.470 6.470 13 N -0.652 5.652 14 C 0.535 3.465 15 O -0.549 6.549 16 C -0.242 4.242 17 C -0.042 4.042 18 C -0.138 4.138 19 C -0.047 4.047 20 C -0.156 4.156 21 C 0.173 3.827 22 H 0.273 0.727 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.448 0.552 26 H 0.142 0.858 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.536 0.661 7.160 10.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.166 4.166 3 Si 0.760 3.240 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.159 1.159 7 C -0.589 4.589 8 H 0.054 0.946 9 C 0.076 3.924 10 N -0.199 5.199 11 C 0.336 3.664 12 O -0.280 6.280 13 N -0.410 5.410 14 C 0.326 3.674 15 O -0.430 6.430 16 C -0.250 4.250 17 C -0.062 4.062 18 C -0.156 4.156 19 C -0.066 4.066 20 C -0.177 4.177 21 C 0.073 3.927 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.317 0.683 26 H 0.160 0.840 27 H 0.190 0.810 28 H 0.192 0.808 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.246 -0.021 6.459 10.475 hybrid contribution -0.962 0.926 -0.032 1.336 sum 7.284 0.904 6.427 9.756 Atomic orbital electron populations 1.70010 1.08392 1.28904 1.49497 1.25626 0.95313 1.02749 0.92905 0.85858 0.79866 0.78413 0.79829 1.18781 1.20993 1.15868 1.21096 0.89502 0.93786 1.54511 0.94632 1.20287 0.94589 0.76110 1.01375 1.45468 1.54002 1.16620 1.03816 1.19941 0.82380 0.83507 0.80534 1.83885 1.40777 1.69739 1.33577 1.68961 1.32753 1.05145 1.34170 1.19039 0.76605 0.86834 0.84963 1.90681 1.45379 1.18341 1.88562 1.20960 1.11447 0.94752 0.97856 1.21238 0.94535 0.99883 0.90523 1.21595 1.00480 0.95325 0.98218 1.21700 0.92544 0.93973 0.98359 1.21132 1.04190 1.02380 0.89953 1.18270 0.96876 0.91086 0.86498 0.91764 0.91153 0.91096 0.68328 0.83999 0.80986 0.80764 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.27 13.96 21.45 0.30 -49.97 15 2 C 0.04 1.71 5.47 84.65 0.46 2.18 15 3 Si 0.94 35.27 27.47 68.60 1.88 37.15 15 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 5 H -0.28 -10.91 7.11 99.48 0.71 -10.21 15 6 H -0.24 -7.74 6.54 99.48 0.65 -7.09 15 7 C -0.55 -25.85 9.94 25.60 0.25 -25.60 15 8 H 0.04 1.96 8.06 -2.91 -0.02 1.94 15 9 C 0.20 7.45 3.69 85.63 0.32 7.77 15 10 N -0.49 -18.69 2.66 -637.14 -1.69 -20.39 15 11 C 0.64 24.63 8.49 179.84 1.53 26.16 15 12 O -0.47 -15.21 12.11 -80.35 -0.97 -16.18 15 13 N -0.65 -28.28 10.44 -432.43 -4.51 -32.79 15 14 C 0.54 23.69 7.96 86.77 0.69 24.38 15 15 O -0.55 -26.62 17.46 -5.12 -0.09 -26.71 15 16 C -0.24 -9.06 5.89 -20.03 -0.12 -9.18 15 17 C -0.04 -1.25 9.67 22.42 0.22 -1.04 15 18 C -0.14 -2.96 10.02 22.29 0.22 -2.73 15 19 C -0.05 -1.03 10.02 22.32 0.22 -0.81 15 20 C -0.16 -4.66 9.23 22.33 0.21 -4.45 15 21 C 0.17 6.28 6.52 38.82 0.25 6.53 15 22 H 0.27 13.81 8.31 -92.70 -0.77 13.04 15 23 H 0.07 2.45 5.37 -2.39 -0.01 2.44 15 24 H 0.07 2.53 6.73 -2.38 -0.02 2.51 15 25 H 0.45 11.03 9.15 -74.06 -0.68 10.35 15 26 H 0.14 3.97 7.82 -2.91 -0.02 3.95 15 27 H 0.17 2.23 8.06 -2.91 -0.02 2.21 15 28 H 0.17 2.36 8.06 -2.91 -0.02 2.34 15 29 H 0.15 4.31 6.33 -2.91 -0.02 4.29 15 Total: -1.00 -68.49 259.63 -0.35 -68.85 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.48 Total: 16.82 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: 4.26 Total: 23.22 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -5.91 Total: -103.15 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -1.06 Total: -42.89 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 1.88 Total: 37.15 kcal Total: -68.49 -0.35 -68.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259451017.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.417 kcal (2) G-P(sol) polarization free energy of solvation -68.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds