Wall clock time and date at job start Mon Mar 30 2020 03:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31371 * 1 3 3 Si 1.86804 * 119.99690 * 2 1 4 4 H 1.48496 * 109.46854 * 239.99936 * 3 2 1 5 5 H 1.48498 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47172 * 120.00193 * 3 2 1 7 7 C 1.39042 * 120.00449 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36831 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99753 * 179.97438 * 9 7 2 11 11 O 1.21716 * 120.00050 * 0.02562 * 10 9 7 12 12 C 1.46758 * 119.99745 * 180.02562 * 10 9 7 13 13 C 1.36089 * 125.46279 * 180.02562 * 12 10 9 14 14 C 1.41376 * 107.74409 * 179.97438 * 13 12 10 15 15 C 1.40850 * 107.05887 * 359.97438 * 14 13 12 16 16 C 1.39135 * 119.57181 * 180.02562 * 15 14 13 17 17 C 1.37799 * 120.07890 * 359.97438 * 16 15 14 18 18 C 1.38741 * 120.72604 * 0.02562 * 17 16 15 19 19 C 1.38085 * 120.40017 * 359.97438 * 18 17 16 20 20 O 1.35767 * 120.20182 * 180.27221 * 19 18 17 21 21 N 1.37584 * 107.38968 * 359.97438 * 15 14 13 22 22 H 0.97001 * 125.63513 * 179.97438 * 21 15 14 23 23 H 0.97004 * 120.00327 * 0.02562 * 1 2 3 24 24 H 0.96993 * 120.00314 * 0.02562 * 9 7 2 25 25 H 1.07995 * 126.12552 * 0.02562 * 13 12 10 26 26 H 1.07996 * 119.96363 * 179.97438 * 16 15 14 27 27 H 1.07998 * 119.63481 * 179.97438 * 17 16 15 28 28 H 1.07997 * 119.79667 * 179.97438 * 18 17 16 29 29 H 0.96698 * 114.00704 * 269.72923 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1014 1.6965 -1.2125 5 1 1.2826 2.7465 -0.0006 6 1 3.1014 1.6965 1.2125 7 6 2.0090 -1.2041 0.0005 8 1 3.0890 -1.2040 0.0010 9 7 1.3249 -2.3891 0.0016 10 6 1.9988 -3.5563 0.0016 11 8 3.2160 -3.5562 0.0011 12 6 1.2650 -4.8272 0.0022 13 6 1.8302 -6.0652 0.0027 14 6 0.7842 -7.0164 0.0037 15 6 -0.4274 -6.2981 0.0044 16 6 -1.6351 -6.9889 0.0060 17 6 -1.6426 -8.3669 0.0064 18 6 -0.4538 -9.0822 0.0058 19 6 0.7590 -8.4220 0.0042 20 8 1.9199 -9.1260 -0.0020 21 7 -0.1116 -4.9590 0.0043 22 1 -0.7492 -4.2280 0.0044 23 1 -0.4851 0.8401 -0.0004 24 1 0.3549 -2.3891 0.0016 25 1 2.8881 -6.2822 0.0032 26 1 -2.5679 -6.4446 0.0069 27 1 -2.5842 -8.8958 0.0081 28 1 -0.4772 -10.1619 0.0065 29 1 2.2612 -9.3295 0.8795 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259595064.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:16 Heat of formation + Delta-G solvation = -26.984433 kcal Electronic energy + Delta-G solvation = -16645.521790 eV Core-core repulsion = 13727.005600 eV Total energy + Delta-G solvation = -2918.516190 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21399 -38.48329 -37.53606 -35.58175 -34.26028 -31.64953 -31.08548 -29.24818 -28.14693 -25.53267 -23.01217 -22.00261 -20.91719 -19.35559 -18.76975 -18.07421 -17.03653 -16.13875 -15.52491 -15.05197 -14.69705 -14.65759 -14.17544 -14.05357 -13.50076 -13.12679 -12.89512 -12.56645 -12.18476 -11.74358 -11.33554 -11.21857 -11.06570 -10.60688 -10.55778 -10.42708 -9.76738 -9.47497 -8.82605 -8.26767 -8.04428 -7.38336 -6.69595 -4.04088 1.00072 1.70502 2.56934 3.13641 3.14146 3.18218 3.28278 3.85592 3.97840 4.18752 4.37856 4.65719 4.97698 5.12928 5.18499 5.29051 5.52232 5.59774 5.85052 5.94778 6.14677 6.28690 6.54531 6.61594 6.78379 6.93462 7.17237 7.30753 7.66032 7.80647 7.85769 8.32327 8.90181 9.21648 9.74166 10.47087 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.046060 B = 0.005065 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.754269 B = 5526.536826 C = 6121.934943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.111 0.889 9 N -0.542 5.542 10 C 0.486 3.514 11 O -0.578 6.578 12 C 0.069 3.931 13 C -0.144 4.144 14 C -0.129 4.129 15 C 0.111 3.889 16 C -0.136 4.136 17 C -0.092 4.092 18 C -0.179 4.179 19 C 0.149 3.851 20 O -0.496 6.496 21 N -0.579 5.579 22 H 0.420 0.580 23 H 0.278 0.722 24 H 0.389 0.611 25 H 0.151 0.849 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 -12.173 1.671 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.178 4.178 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.429 4.429 8 H 0.129 0.871 9 N -0.175 5.175 10 C 0.272 3.728 11 O -0.463 6.463 12 C -0.042 4.042 13 C -0.170 4.170 14 C -0.135 4.135 15 C 0.000 4.000 16 C -0.157 4.157 17 C -0.111 4.111 18 C -0.199 4.199 19 C 0.104 3.896 20 O -0.306 6.306 21 N -0.184 5.184 22 H 0.259 0.741 23 H 0.088 0.912 24 H 0.223 0.777 25 H 0.169 0.831 26 H 0.139 0.861 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.792 -11.756 1.062 12.740 hybrid contribution -0.565 1.163 0.480 1.379 sum -5.358 -10.594 1.542 11.971 Atomic orbital electron populations 1.69563 1.06216 1.29110 1.48130 1.25412 0.95732 1.00256 0.96404 0.85786 0.78812 0.79527 0.79455 1.19498 1.20716 1.19500 1.19800 0.93845 0.81860 1.47346 0.87147 1.41835 1.09057 1.04924 1.61716 1.16731 0.87225 0.81707 0.87101 1.90692 1.12204 1.85954 1.57432 1.20943 0.81174 0.96628 1.05412 1.20621 0.98919 0.89029 1.08469 1.18470 0.93372 0.92843 1.08785 1.18170 0.94780 0.83400 1.03604 1.20036 0.94712 0.94040 1.06911 1.20551 0.97551 0.92662 1.00359 1.20996 0.91452 0.99901 1.07562 1.17929 0.85372 0.87192 0.99113 1.84746 1.38109 1.74433 1.33301 1.42244 1.06775 1.05864 1.63557 0.74134 0.91219 0.77749 0.83129 0.86077 0.85600 0.85765 0.75646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.90 13.05 55.50 0.72 -22.18 15 2 C 0.03 0.66 5.50 -17.45 -0.10 0.56 15 3 Si 0.94 20.05 29.55 -169.99 -5.02 15.02 15 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 15 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 7 C -0.30 -8.05 9.68 -15.02 -0.15 -8.19 15 8 H 0.11 3.09 7.15 -52.49 -0.38 2.72 15 9 N -0.54 -13.49 5.27 -12.15 -0.06 -13.56 15 10 C 0.49 11.91 7.74 -12.82 -0.10 11.81 15 11 O -0.58 -16.05 16.41 5.17 0.08 -15.96 15 12 C 0.07 1.41 6.97 -82.28 -0.57 0.84 15 13 C -0.14 -2.79 10.52 -39.16 -0.41 -3.20 15 14 C -0.13 -2.22 6.11 -106.83 -0.65 -2.87 15 15 C 0.11 1.80 7.24 -83.96 -0.61 1.19 15 16 C -0.14 -1.79 10.06 -39.41 -0.40 -2.18 15 17 C -0.09 -1.07 10.01 -39.56 -0.40 -1.46 15 18 C -0.18 -2.24 9.96 -39.45 -0.39 -2.64 15 19 C 0.15 2.21 6.75 -38.75 -0.26 1.95 15 20 O -0.50 -6.61 13.50 -19.01 -0.26 -6.86 15 21 N -0.58 -9.92 6.08 -7.36 -0.04 -9.97 15 22 H 0.42 6.37 8.12 -40.82 -0.33 6.04 15 23 H 0.28 6.74 8.31 -40.82 -0.34 6.40 15 24 H 0.39 9.03 6.95 -40.82 -0.28 8.74 15 25 H 0.15 2.87 8.06 -52.49 -0.42 2.45 15 26 H 0.12 1.30 8.06 -52.49 -0.42 0.88 15 27 H 0.13 1.08 8.06 -52.49 -0.42 0.65 15 28 H 0.12 1.27 8.06 -52.49 -0.42 0.84 15 29 H 0.39 3.26 9.06 45.56 0.41 3.67 15 LS Contribution 267.55 15.07 4.03 4.03 Total: -1.00 -31.44 267.55 -5.99 -37.43 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -1.40 Total: 16.25 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -4.03 Total: -4.21 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.62 Total: -45.70 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.17 Total: -22.82 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.44 -5.99 -37.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259595064.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.443 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds