Wall clock time and date at job start Mon Mar 30 2020 03:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31371 * 1 3 3 Si 1.86804 * 119.99690 * 2 1 4 4 H 1.48496 * 109.46854 * 239.99936 * 3 2 1 5 5 H 1.48498 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47172 * 120.00193 * 3 2 1 7 7 C 1.39042 * 120.00449 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36831 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99753 * 179.97438 * 9 7 2 11 11 O 1.21716 * 120.00050 * 0.02562 * 10 9 7 12 12 C 1.46758 * 119.99745 * 180.02562 * 10 9 7 13 13 C 1.36089 * 125.46279 * 180.02562 * 12 10 9 14 14 C 1.41376 * 107.74409 * 179.97438 * 13 12 10 15 15 C 1.40850 * 107.05887 * 359.97438 * 14 13 12 16 16 C 1.39135 * 119.57181 * 180.02562 * 15 14 13 17 17 C 1.37799 * 120.07890 * 359.97438 * 16 15 14 18 18 C 1.38741 * 120.72604 * 0.02562 * 17 16 15 19 19 C 1.38085 * 120.40017 * 359.97438 * 18 17 16 20 20 O 1.35767 * 120.20182 * 180.27221 * 19 18 17 21 21 N 1.37584 * 107.38968 * 359.97438 * 15 14 13 22 22 H 0.97001 * 125.63513 * 179.97438 * 21 15 14 23 23 H 0.97004 * 120.00327 * 0.02562 * 1 2 3 24 24 H 0.96993 * 120.00314 * 0.02562 * 9 7 2 25 25 H 1.07995 * 126.12552 * 0.02562 * 13 12 10 26 26 H 1.07996 * 119.96363 * 179.97438 * 16 15 14 27 27 H 1.07998 * 119.63481 * 179.97438 * 17 16 15 28 28 H 1.07997 * 119.79667 * 179.97438 * 18 17 16 29 29 H 0.96698 * 114.00704 * 269.72923 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1014 1.6965 -1.2125 5 1 1.2826 2.7465 -0.0006 6 1 3.1014 1.6965 1.2125 7 6 2.0090 -1.2041 0.0005 8 1 3.0890 -1.2040 0.0010 9 7 1.3249 -2.3891 0.0016 10 6 1.9988 -3.5563 0.0016 11 8 3.2160 -3.5562 0.0011 12 6 1.2650 -4.8272 0.0022 13 6 1.8302 -6.0652 0.0027 14 6 0.7842 -7.0164 0.0037 15 6 -0.4274 -6.2981 0.0044 16 6 -1.6351 -6.9889 0.0060 17 6 -1.6426 -8.3669 0.0064 18 6 -0.4538 -9.0822 0.0058 19 6 0.7590 -8.4220 0.0042 20 8 1.9199 -9.1260 -0.0020 21 7 -0.1116 -4.9590 0.0043 22 1 -0.7492 -4.2280 0.0044 23 1 -0.4851 0.8401 -0.0004 24 1 0.3549 -2.3891 0.0016 25 1 2.8881 -6.2822 0.0032 26 1 -2.5679 -6.4446 0.0069 27 1 -2.5842 -8.8958 0.0081 28 1 -0.4772 -10.1619 0.0065 29 1 2.2612 -9.3295 0.8795 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259595064.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:15 Heat of formation + Delta-G solvation = -51.098225 kcal Electronic energy + Delta-G solvation = -16646.567443 eV Core-core repulsion = 13727.005600 eV Total energy + Delta-G solvation = -2919.561843 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.52929 -40.12823 -38.88555 -36.69092 -36.24340 -33.54207 -32.46202 -30.52212 -29.38170 -27.37079 -24.50605 -23.18952 -22.23847 -21.00047 -20.38819 -19.58656 -18.56465 -17.37682 -16.80322 -16.65231 -16.16440 -16.05564 -15.82281 -15.45692 -15.00878 -14.72280 -14.48978 -13.94732 -13.62322 -13.18561 -13.01750 -12.58079 -12.40746 -12.18323 -12.15857 -11.68164 -11.60205 -10.83540 -10.75337 -10.24268 -9.27260 -8.64231 -8.63533 -6.09713 -0.23334 0.59732 1.09147 1.39432 1.46579 1.50554 1.95296 2.21241 2.36608 2.79227 2.90978 3.14770 3.34527 3.86631 4.07880 4.17706 4.18861 4.41846 4.54593 4.83997 4.91565 5.00601 5.27417 5.46199 5.52224 5.57450 5.63381 5.82109 6.00242 6.35904 6.46222 6.91013 6.92320 7.27124 7.80840 8.52448 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.046060 B = 0.005065 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.754269 B = 5526.536826 C = 6121.934943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.005 4.005 3 Si 1.001 2.999 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.342 4.342 8 H 0.088 0.912 9 N -0.546 5.546 10 C 0.487 3.513 11 O -0.621 6.621 12 C 0.033 3.967 13 C -0.137 4.137 14 C -0.163 4.163 15 C 0.109 3.891 16 C -0.145 4.145 17 C -0.068 4.068 18 C -0.172 4.172 19 C 0.143 3.857 20 O -0.507 6.507 21 N -0.573 5.573 22 H 0.426 0.574 23 H 0.285 0.715 24 H 0.395 0.605 25 H 0.141 0.859 26 H 0.149 0.851 27 H 0.170 0.830 28 H 0.155 0.845 29 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.635 -13.912 1.766 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.207 4.207 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.471 4.471 8 H 0.106 0.894 9 N -0.180 5.180 10 C 0.275 3.725 11 O -0.509 6.509 12 C -0.077 4.077 13 C -0.165 4.165 14 C -0.168 4.168 15 C -0.002 4.002 16 C -0.165 4.165 17 C -0.087 4.087 18 C -0.192 4.192 19 C 0.098 3.902 20 O -0.320 6.320 21 N -0.179 5.179 22 H 0.266 0.734 23 H 0.095 0.905 24 H 0.230 0.770 25 H 0.159 0.841 26 H 0.166 0.834 27 H 0.188 0.812 28 H 0.173 0.827 29 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -7.093 -13.507 1.171 15.301 hybrid contribution 0.049 1.384 0.460 1.459 sum -7.044 -12.123 1.631 14.115 Atomic orbital electron populations 1.69611 1.07027 1.30272 1.47764 1.26208 0.96651 1.02751 0.95113 0.84872 0.77829 0.75714 0.79287 1.19417 1.19015 1.19326 1.19789 0.93308 0.83430 1.50554 0.89401 1.41778 1.09228 1.04724 1.62237 1.17263 0.87012 0.82841 0.85375 1.90631 1.14226 1.87027 1.59045 1.20241 0.82890 0.94842 1.09767 1.20721 0.99217 0.89608 1.06925 1.18675 0.92893 0.94092 1.11099 1.18607 0.95838 0.82576 1.03134 1.20458 0.94432 0.94923 1.06734 1.21139 0.99069 0.92040 0.96477 1.21416 0.90597 1.01558 1.05609 1.18154 0.86745 0.86338 0.99007 1.84689 1.38049 1.73957 1.35270 1.42058 1.05367 1.06838 1.63597 0.73417 0.90537 0.77041 0.84081 0.83365 0.81216 0.82700 0.73270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.94 13.05 21.68 0.28 -46.66 15 2 C -0.01 -0.27 5.50 84.95 0.47 0.20 15 3 Si 1.00 41.34 29.55 68.60 2.03 43.37 15 4 H -0.27 -11.03 7.11 99.48 0.71 -10.33 15 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 15 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 7 C -0.34 -19.24 9.68 84.11 0.81 -18.43 15 8 H 0.09 5.24 7.15 -2.91 -0.02 5.22 15 9 N -0.55 -28.58 5.27 -310.56 -1.64 -30.22 15 10 C 0.49 25.30 7.74 86.47 0.67 25.97 15 11 O -0.62 -36.77 16.41 -4.40 -0.07 -36.84 15 12 C 0.03 1.41 6.97 39.85 0.28 1.69 15 13 C -0.14 -5.50 10.52 22.54 0.24 -5.26 15 14 C -0.16 -5.48 6.11 -21.30 -0.13 -5.61 15 15 C 0.11 3.37 7.24 39.10 0.28 3.65 15 16 C -0.14 -3.25 10.06 22.38 0.23 -3.02 15 17 C -0.07 -1.22 10.01 22.29 0.22 -0.99 15 18 C -0.17 -3.52 9.96 22.35 0.22 -3.30 15 19 C 0.14 3.90 6.75 22.81 0.15 4.05 15 20 O -0.51 -12.54 13.50 -90.95 -1.23 -13.77 15 21 N -0.57 -19.81 6.08 -177.19 -1.08 -20.89 15 22 H 0.43 13.09 8.12 -92.71 -0.75 12.33 15 23 H 0.28 13.66 8.31 -92.71 -0.77 12.89 15 24 H 0.40 19.15 6.95 -92.71 -0.64 18.51 15 25 H 0.14 5.71 8.06 -2.91 -0.02 5.69 15 26 H 0.15 2.52 8.06 -2.91 -0.02 2.49 15 27 H 0.17 1.66 8.06 -2.91 -0.02 1.63 15 28 H 0.16 2.26 8.06 -2.91 -0.02 2.24 15 29 H 0.41 6.11 9.06 -74.06 -0.67 5.44 15 Total: -1.00 -70.63 267.55 0.91 -69.73 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -0.83 Total: 36.35 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 3.44 Total: -1.07 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -2.43 Total: -97.77 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -1.30 Total: -50.61 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -70.63 0.91 -69.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259595064.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.627 kcal (2) G-P(sol) polarization free energy of solvation -70.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds