Wall clock time and date at job start Mon Mar 30 2020 03:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00036 * 2 1 4 4 H 1.48507 * 109.47022 * 179.72544 * 3 2 1 5 5 H 1.48496 * 109.47458 * 299.72976 * 3 2 1 6 6 H 1.48502 * 109.46944 * 59.73092 * 3 2 1 7 7 C 1.37880 * 119.99769 * 179.73361 * 2 1 3 8 8 H 1.07992 * 120.00087 * 180.27539 * 7 2 1 9 9 C 1.50698 * 119.99995 * 0.26796 * 7 2 1 10 10 C 1.50697 * 109.47104 * 180.02562 * 9 7 2 11 11 N 1.29829 * 125.74352 * 84.34509 * 10 9 7 12 12 O 1.41658 * 108.00687 * 179.97438 * 11 10 9 13 13 N 1.41708 * 107.50845 * 359.97438 * 12 11 10 14 14 C 1.30812 * 107.66043 * 359.73349 * 13 12 11 15 15 C 1.48414 * 125.84777 * 180.25155 * 14 13 12 16 16 C 1.39377 * 120.09413 * 41.94842 * 15 14 13 17 17 C 1.38029 * 119.98827 * 180.02562 * 16 15 14 18 18 C 1.38250 * 120.17958 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.18944 * 0.02562 * 18 17 16 20 20 O 1.35904 * 119.99502 * 180.02562 * 19 18 17 21 21 C 1.38542 * 120.00614 * 359.72070 * 19 18 17 22 22 H 0.96997 * 119.99709 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47652 * 300.00425 * 9 7 2 24 24 H 1.09002 * 109.47023 * 60.00322 * 9 7 2 25 25 H 1.08001 * 120.00585 * 359.97438 * 16 15 14 26 26 H 1.07997 * 119.90786 * 180.02562 * 17 16 15 27 27 H 1.07998 * 119.90582 * 180.02562 * 18 17 16 28 28 H 0.96699 * 114.00202 * 90.00009 * 20 19 18 29 29 H 1.08006 * 120.08989 * 180.27875 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0067 5 1 1.8955 2.3936 -1.2157 6 1 1.8855 2.3992 1.2092 7 6 2.0046 -1.1941 0.0056 8 1 3.0845 -1.1941 0.0100 9 6 1.2510 -2.4991 0.0055 10 6 2.2303 -3.6446 0.0128 11 7 2.7973 -4.1509 1.0652 12 8 3.6432 -5.2056 0.6422 13 7 3.5389 -5.2962 -0.7681 14 6 2.6960 -4.3774 -1.1636 15 6 2.2858 -4.1202 -2.5665 16 6 2.0184 -5.1865 -3.4232 17 6 1.6376 -4.9448 -4.7277 18 6 1.5208 -3.6465 -5.1884 19 6 1.7863 -2.5790 -4.3420 20 8 1.6698 -1.3044 -4.7988 21 6 2.1640 -2.8127 -3.0297 22 1 -0.4849 -0.8400 -0.0004 23 1 0.6207 -2.5549 0.8930 24 1 0.6280 -2.5589 -0.8869 25 1 2.1100 -6.2019 -3.0667 26 1 1.4304 -5.7720 -5.3903 27 1 1.2222 -3.4624 -6.2098 28 1 0.7889 -0.9233 -4.6808 29 1 2.3665 -1.9830 -2.3686 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259608051.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:05 Heat of formation + Delta-G solvation = 54.579437 kcal Electronic energy + Delta-G solvation = -17097.060294 eV Core-core repulsion = 14182.080978 eV Total energy + Delta-G solvation = -2914.979316 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.66638 -39.39979 -36.63220 -34.53121 -33.10259 -32.20692 -30.44191 -29.44633 -28.11310 -24.12817 -23.58279 -22.51216 -21.00406 -20.24572 -18.10354 -17.17813 -16.47729 -16.09933 -15.63309 -15.27470 -14.88855 -14.16405 -13.87009 -13.72709 -13.56827 -12.93935 -12.44131 -12.19585 -12.13924 -11.74802 -11.38568 -11.19486 -10.80721 -10.72691 -10.57188 -10.37845 -10.28881 -10.22194 -8.90706 -8.78582 -8.62629 -8.58294 -6.66621 -4.41636 0.70868 1.32440 1.49379 2.57826 3.16732 3.34459 3.36022 3.51072 3.58460 3.81922 4.19431 4.34487 4.37205 4.92844 5.01307 5.09864 5.19506 5.32535 5.51019 5.73951 5.81072 6.05358 6.13133 6.33952 6.46864 6.53164 6.72585 6.78191 6.80967 7.60048 7.66584 7.79248 8.12273 8.52486 9.28526 10.73128 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.015965 B = 0.010259 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.392169 B = 2728.675073 C = 4102.710497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.030 3.970 3 Si 1.074 2.926 4 H -0.287 1.287 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.602 4.602 8 H 0.056 0.944 9 C 0.064 3.936 10 C 0.132 3.868 11 N -0.292 5.292 12 O -0.002 6.002 13 N -0.289 5.289 14 C 0.124 3.876 15 C -0.024 4.024 16 C -0.095 4.095 17 C -0.113 4.113 18 C -0.130 4.130 19 C 0.107 3.893 20 O -0.495 6.495 21 C -0.097 4.097 22 H 0.271 0.729 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.127 0.873 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.395 0.605 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 -5.798 -10.126 11.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.901 3.099 4 H -0.213 1.213 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.641 4.641 8 H 0.074 0.926 9 C 0.025 3.975 10 C -0.052 4.052 11 N -0.040 5.040 12 O -0.137 6.137 13 N -0.032 5.032 14 C -0.059 4.059 15 C -0.026 4.026 16 C -0.115 4.115 17 C -0.131 4.131 18 C -0.149 4.149 19 C 0.062 3.938 20 O -0.306 6.306 21 C -0.116 4.116 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.145 0.855 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.252 0.748 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.132 -5.162 -9.346 10.737 hybrid contribution -0.653 -1.231 -0.180 1.405 sum 0.479 -6.393 -9.527 11.483 Atomic orbital electron populations 1.70766 1.06790 1.30815 1.44936 1.25872 0.96309 1.02535 0.92871 0.83450 0.74639 0.74405 0.77387 1.21269 1.20818 1.20989 1.21749 0.94546 0.89845 1.57948 0.92587 1.18351 0.91657 0.88146 0.99323 1.26563 0.96163 0.96005 0.86472 1.79809 1.04943 0.99999 1.19235 1.93218 1.59580 1.47487 1.13377 1.79926 1.13918 1.17066 0.92287 1.24124 0.93753 0.92368 0.95673 1.17560 1.03010 0.93836 0.88163 1.21184 0.98593 0.98305 0.93412 1.20862 1.00529 0.96490 0.95251 1.21571 1.00587 0.92409 1.00354 1.18280 0.99974 0.84490 0.91067 1.84795 1.37485 1.25211 1.83101 1.22075 0.96615 0.97320 0.95616 0.91846 0.93918 0.93628 0.85465 0.85128 0.85185 0.74831 0.81885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 13.65 55.43 0.76 -23.63 15 2 C 0.03 0.78 5.46 -17.82 -0.10 0.68 15 3 Si 1.07 23.52 29.90 -169.99 -5.08 18.43 15 4 H -0.29 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 15 6 H -0.28 -6.18 7.11 56.52 0.40 -5.77 15 7 C -0.60 -15.43 7.70 -34.44 -0.27 -15.69 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 15 9 C 0.06 1.48 4.01 -29.04 -0.12 1.36 15 10 C 0.13 2.92 6.55 -80.24 -0.53 2.40 15 11 N -0.29 -6.72 12.93 34.84 0.45 -6.27 15 12 O 0.00 -0.05 13.63 12.21 0.17 0.11 15 13 N -0.29 -5.87 13.00 34.44 0.45 -5.42 15 14 C 0.12 2.46 6.82 -80.91 -0.55 1.90 15 15 C -0.02 -0.41 5.68 -104.91 -0.60 -1.01 15 16 C -0.10 -1.34 9.77 -39.23 -0.38 -1.72 15 17 C -0.11 -1.32 10.03 -39.65 -0.40 -1.72 15 18 C -0.13 -1.60 9.98 -39.37 -0.39 -1.99 15 19 C 0.11 1.59 6.70 -39.26 -0.26 1.33 15 20 O -0.50 -7.05 13.50 -19.44 -0.26 -7.31 15 21 C -0.10 -1.69 8.45 -39.10 -0.33 -2.02 15 22 H 0.27 7.24 7.22 -40.82 -0.29 6.94 15 23 H 0.04 1.05 8.00 -51.93 -0.42 0.63 15 24 H 0.05 1.02 7.02 -51.93 -0.36 0.66 15 25 H 0.13 1.62 8.06 -52.49 -0.42 1.20 15 26 H 0.13 1.10 8.06 -52.49 -0.42 0.68 15 27 H 0.13 1.26 8.06 -52.49 -0.42 0.84 15 28 H 0.40 4.06 9.06 45.56 0.41 4.47 15 29 H 0.16 3.28 6.07 -52.48 -0.32 2.96 15 LS Contribution 268.39 15.07 4.04 4.04 Total: -1.00 -29.27 268.39 -4.85 -34.12 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -1.45 Total: 2.39 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -3.92 Total: -16.47 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 1.65 Total: -35.31 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.10 Total: -7.20 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.08 Total: 18.43 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.27 -4.85 -34.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259608051.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.700 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds