Wall clock time and date at job start Mon Mar 30 2020 03:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00164 * 2 1 4 4 H 1.48500 * 109.47130 * 240.00090 * 3 2 1 5 5 H 1.48498 * 109.46913 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47188 * 119.99656 * 3 2 1 7 7 C 1.37882 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99672 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.50692 * 109.46999 * 180.02562 * 9 7 2 11 11 N 1.29815 * 125.74132 * 275.52939 * 10 9 7 12 12 O 1.41657 * 108.01827 * 180.02562 * 11 10 9 13 13 N 1.41700 * 107.52144 * 359.76338 * 12 11 10 14 14 C 1.30857 * 107.65046 * 0.40690 * 13 12 11 15 15 C 1.48292 * 125.85479 * 179.86214 * 14 13 12 16 16 C 1.39344 * 120.15762 * 132.16588 * 15 14 13 17 17 C 1.37973 * 119.93312 * 180.02562 * 16 15 14 18 18 C 1.38419 * 120.24511 * 359.97438 * 17 16 15 19 19 C 1.38150 * 120.31419 * 0.02562 * 18 17 16 20 20 C 1.38620 * 120.06079 * 359.97438 * 19 18 17 21 21 O 1.35811 * 120.11765 * 180.02562 * 20 19 18 22 22 H 0.96997 * 119.99812 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46707 * 60.00242 * 9 7 2 24 24 H 1.08998 * 109.47133 * 300.00290 * 9 7 2 25 25 H 1.08006 * 120.03294 * 0.03803 * 16 15 14 26 26 H 1.07991 * 119.87246 * 180.02562 * 17 16 15 27 27 H 1.08002 * 119.84225 * 180.28339 * 18 17 16 28 28 H 1.07999 * 119.96899 * 180.02562 * 19 18 17 29 29 H 0.96695 * 114.00021 * 90.00423 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2304 -3.6445 0.0027 11 7 2.8003 -4.1558 -1.0456 12 8 3.6451 -5.2084 -0.6155 13 7 3.5421 -5.2887 0.7955 14 6 2.6980 -4.3676 1.1847 15 6 2.2905 -4.0988 2.5850 16 6 2.2880 -2.7944 3.0752 17 6 1.9085 -2.5497 4.3789 18 6 1.5293 -3.5954 5.2028 19 6 1.5281 -4.8925 4.7273 20 6 1.9070 -5.1531 3.4196 21 8 1.9056 -6.4277 2.9508 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5563 0.8919 25 1 2.5827 -1.9759 2.4352 26 1 1.9066 -1.5384 4.7577 27 1 1.2291 -3.3958 6.2208 28 1 1.2308 -5.7041 5.3748 29 1 1.0673 -6.6995 2.5529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259615121.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:26 Heat of formation + Delta-G solvation = 40.031156 kcal Electronic energy + Delta-G solvation = -17147.642503 eV Core-core repulsion = 14232.032327 eV Total energy + Delta-G solvation = -2915.610176 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.18400 -40.51773 -37.66339 -36.03942 -34.64702 -33.92429 -31.55614 -30.55501 -30.30440 -25.94669 -25.01352 -23.60503 -22.32938 -21.59720 -19.37453 -18.65976 -18.16779 -17.09766 -16.97568 -16.60978 -16.37454 -16.05489 -15.16784 -15.07983 -14.69020 -14.42699 -13.96421 -13.40293 -13.24810 -13.12618 -12.82921 -12.72804 -12.63531 -12.52109 -12.14010 -12.04264 -11.98657 -11.45281 -11.21112 -10.64275 -9.88593 -9.62551 -8.27836 -6.40811 -0.59580 0.14036 0.34620 1.08602 1.44340 1.46770 1.54211 1.67923 2.22090 2.39342 2.63361 2.78087 3.07746 3.20172 3.74743 3.98074 4.15189 4.30753 4.45172 4.52097 4.56148 4.78272 5.05459 5.12712 5.16331 5.34565 5.41565 5.54796 5.61602 5.86311 5.93215 6.05095 6.64102 6.70506 7.27952 8.82690 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.008908 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.635419 B = 3142.596962 C = 4170.498008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.031 3.969 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.091 3.909 10 C 0.123 3.877 11 N -0.316 5.316 12 O -0.022 6.022 13 N -0.283 5.283 14 C 0.138 3.862 15 C -0.099 4.099 16 C -0.070 4.070 17 C -0.131 4.131 18 C -0.068 4.068 19 C -0.147 4.147 20 C 0.132 3.868 21 O -0.503 6.503 22 H 0.272 0.728 23 H 0.028 0.972 24 H 0.056 0.944 25 H 0.128 0.872 26 H 0.153 0.847 27 H 0.172 0.828 28 H 0.164 0.836 29 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 -5.017 12.769 13.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.171 4.171 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.574 4.574 8 H 0.069 0.931 9 C 0.053 3.947 10 C -0.062 4.062 11 N -0.064 5.064 12 O -0.153 6.153 13 N -0.027 5.027 14 C -0.045 4.045 15 C -0.101 4.101 16 C -0.089 4.089 17 C -0.149 4.149 18 C -0.087 4.087 19 C -0.165 4.165 20 C 0.086 3.914 21 O -0.315 6.315 22 H 0.081 0.919 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.146 0.854 26 H 0.171 0.829 27 H 0.190 0.810 28 H 0.181 0.819 29 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 0.548 -5.872 12.023 13.392 hybrid contribution -0.435 1.138 -0.598 1.357 sum 0.113 -4.734 11.425 12.367 Atomic orbital electron populations 1.69998 1.07240 1.28627 1.49066 1.25613 0.95608 1.02166 0.93697 0.85601 0.78504 0.78476 0.79185 1.20482 1.20155 1.18430 1.20878 0.92692 0.89967 1.53902 0.93116 1.17955 0.90823 0.86640 0.99302 1.26823 0.95874 0.96105 0.87352 1.79728 1.05712 1.00770 1.20219 1.93186 1.59831 1.47444 1.14883 1.80078 1.14578 1.17343 0.90744 1.24296 0.92798 0.91125 0.96272 1.18311 1.08774 0.95519 0.87523 1.21473 0.95910 0.94368 0.97189 1.21440 0.99531 1.01548 0.92335 1.21659 0.94838 0.90937 1.01218 1.21626 1.01793 0.99114 0.93988 1.18637 0.97790 0.82581 0.92389 1.84770 1.41380 1.25324 1.80040 0.91911 0.95414 0.92595 0.85445 0.82904 0.81035 0.81878 0.73525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.72 13.29 21.45 0.28 -48.44 15 2 C 0.03 1.57 5.46 84.66 0.46 2.03 15 3 Si 0.96 40.34 29.54 68.60 2.03 42.36 15 4 H -0.28 -11.95 7.11 99.48 0.71 -11.25 15 5 H -0.28 -11.26 7.11 99.48 0.71 -10.56 15 6 H -0.26 -10.33 7.11 99.48 0.71 -9.63 15 7 C -0.54 -27.73 7.93 25.60 0.20 -27.52 15 8 H 0.05 2.67 7.74 -2.91 -0.02 2.64 15 9 C 0.09 4.45 4.87 29.10 0.14 4.59 15 10 C 0.12 5.63 6.56 44.94 0.30 5.92 15 11 N -0.32 -15.13 12.93 -43.67 -0.56 -15.70 15 12 O -0.02 -1.02 13.63 71.06 0.97 -0.06 15 13 N -0.28 -12.15 12.68 -45.01 -0.57 -12.72 15 14 C 0.14 5.69 6.43 44.05 0.28 5.98 15 15 C -0.10 -3.43 5.61 -19.95 -0.11 -3.54 15 16 C -0.07 -2.30 8.78 22.47 0.20 -2.10 15 17 C -0.13 -3.17 10.03 22.25 0.22 -2.95 15 18 C -0.07 -1.27 10.03 22.29 0.22 -1.05 15 19 C -0.15 -3.05 9.98 22.34 0.22 -2.82 15 20 C 0.13 3.74 6.71 22.75 0.15 3.90 15 21 O -0.50 -13.68 12.69 -91.43 -1.16 -14.84 15 22 H 0.27 13.67 8.31 -92.71 -0.77 12.90 15 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 15 24 H 0.06 2.69 7.45 -2.39 -0.02 2.67 15 25 H 0.13 4.85 6.67 -2.91 -0.02 4.83 15 26 H 0.15 3.01 8.06 -2.92 -0.02 2.99 15 27 H 0.17 1.76 8.06 -2.91 -0.02 1.74 15 28 H 0.16 2.35 8.06 -2.91 -0.02 2.32 15 29 H 0.41 7.66 9.06 -74.06 -0.67 6.99 15 Total: -1.00 -63.65 270.02 3.81 -59.84 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.53 Total: 7.10 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 2.29 Total: -17.56 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -0.85 Total: -76.85 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.19 Total: -14.89 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.36 kcal Total: -63.65 3.81 -59.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615121.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.874 kcal (2) G-P(sol) polarization free energy of solvation -63.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds