Wall clock time and date at job start Mon Mar 30 2020 03:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31359 * 1 3 3 Si 1.86794 * 119.99932 * 2 1 4 4 H 1.48504 * 109.47423 * 269.99947 * 3 2 1 5 5 H 1.48498 * 109.47295 * 30.00410 * 3 2 1 6 6 H 1.48502 * 109.47097 * 150.00066 * 3 2 1 7 7 C 1.39062 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99816 * 180.02562 * 7 2 1 9 9 N 1.36809 * 119.99897 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99555 * 180.02562 * 9 7 2 11 11 O 1.21701 * 120.00492 * 359.97438 * 10 9 7 12 12 C 1.46893 * 119.99829 * 180.02562 * 10 9 7 13 13 C 1.36025 * 125.44200 * 179.97438 * 12 10 9 14 14 C 1.41548 * 107.74673 * 179.73718 * 13 12 10 15 15 C 1.40164 * 133.26741 * 179.97438 * 14 13 12 16 16 C 1.37853 * 119.66293 * 180.02562 * 15 14 13 17 17 O 1.35984 * 119.81850 * 179.97438 * 16 15 14 18 18 C 1.39377 * 120.35753 * 359.93573 * 16 15 14 19 19 C 1.37620 * 120.60645 * 0.04126 * 18 16 15 20 20 C 1.39178 * 120.02743 * 0.02562 * 19 18 16 21 21 N 1.37731 * 133.01649 * 179.97438 * 20 19 18 22 22 H 0.96995 * 125.62271 * 0.06090 * 21 20 19 23 23 H 0.97003 * 120.00428 * 0.02562 * 1 2 3 24 24 H 0.96992 * 120.00208 * 0.02562 * 9 7 2 25 25 H 1.07999 * 126.12194 * 359.75173 * 13 12 10 26 26 H 1.07998 * 120.17157 * 0.02562 * 15 14 13 27 27 H 0.96705 * 114.00297 * 269.97822 * 17 16 15 28 28 H 1.08001 * 119.69309 * 180.02562 * 18 16 15 29 29 H 1.08001 * 119.98770 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4951 2.0464 -1.4001 5 1 1.4451 2.6526 0.7001 6 1 3.5451 1.4401 0.7000 7 6 2.0089 -1.2043 -0.0005 8 1 3.0889 -1.2043 -0.0001 9 7 1.3248 -2.3891 -0.0005 10 6 1.9988 -3.5563 -0.0005 11 8 3.2158 -3.5563 -0.0010 12 6 1.2643 -4.8284 -0.0011 13 6 1.8297 -6.0656 -0.0017 14 6 0.7829 -7.0184 0.0041 15 6 0.7594 -8.4198 0.0058 16 6 -0.4497 -9.0818 0.0114 17 8 -0.4762 -10.4414 0.0125 18 6 -1.6452 -8.3652 0.0168 19 6 -1.6371 -6.9890 0.0157 20 6 -0.4281 -6.2996 0.0086 21 7 -0.1107 -4.9594 0.0054 22 1 -0.7478 -4.2279 0.0087 23 1 -0.4851 0.8400 -0.0004 24 1 0.3549 -2.3891 -0.0005 25 1 2.8878 -6.2821 -0.0055 26 1 1.6838 -8.9782 0.0027 27 1 -0.4880 -10.8354 -0.8706 28 1 -2.5864 -8.8948 0.0215 29 1 -2.5694 -6.4438 0.0194 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259637383.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:55 Heat of formation + Delta-G solvation = -51.078703 kcal Electronic energy + Delta-G solvation = -16500.832923 eV Core-core repulsion = 13581.271927 eV Total energy + Delta-G solvation = -2919.560996 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.49954 -40.13887 -39.12393 -36.25132 -36.10683 -33.55617 -33.03570 -30.04559 -29.59713 -27.32679 -24.60822 -23.11559 -22.27271 -21.01041 -20.31768 -19.18221 -18.84411 -17.96409 -16.84413 -16.32042 -16.10107 -15.99098 -15.81687 -15.17309 -14.84838 -14.73326 -14.52077 -13.96091 -13.67011 -13.54668 -13.01318 -12.63605 -12.55698 -12.16083 -12.14695 -11.67795 -11.34718 -10.90639 -10.82438 -10.23490 -9.11354 -8.75040 -8.63881 -6.09011 -0.21669 0.51236 1.10016 1.40330 1.45458 1.53424 1.96172 2.21741 2.37175 2.77181 2.90558 3.15607 3.40850 3.73840 4.03317 4.14338 4.28214 4.44162 4.54522 4.68018 4.93597 5.06957 5.26772 5.30047 5.48441 5.53614 5.67805 5.80860 5.97668 6.36138 6.46143 6.91948 6.99440 7.28078 7.81640 8.52985 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.056894 B = 0.004623 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.025330 B = 6055.050014 C = 6534.668277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.006 4.006 3 Si 1.001 2.999 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.088 0.912 9 N -0.546 5.546 10 C 0.487 3.513 11 O -0.620 6.620 12 C 0.041 3.959 13 C -0.148 4.148 14 C -0.114 4.114 15 C -0.105 4.105 16 C 0.077 3.923 17 O -0.505 6.505 18 C -0.112 4.112 19 C -0.111 4.111 20 C 0.085 3.915 21 N -0.572 5.572 22 H 0.426 0.574 23 H 0.285 0.715 24 H 0.395 0.605 25 H 0.148 0.852 26 H 0.139 0.861 27 H 0.407 0.593 28 H 0.161 0.839 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 -13.513 -1.719 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.208 4.208 3 Si 0.823 3.177 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.106 0.894 9 N -0.180 5.180 10 C 0.275 3.725 11 O -0.508 6.508 12 C -0.070 4.070 13 C -0.175 4.175 14 C -0.119 4.119 15 C -0.124 4.124 16 C 0.031 3.969 17 O -0.317 6.317 18 C -0.132 4.132 19 C -0.132 4.132 20 C -0.024 4.024 21 N -0.178 5.178 22 H 0.265 0.735 23 H 0.094 0.906 24 H 0.230 0.770 25 H 0.166 0.834 26 H 0.156 0.844 27 H 0.265 0.735 28 H 0.179 0.821 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.876 -13.087 -1.113 14.825 hybrid contribution -0.149 1.254 -0.483 1.352 sum -7.026 -11.832 -1.596 13.853 Atomic orbital electron populations 1.69610 1.07035 1.30190 1.47852 1.26210 0.96648 1.02776 0.95179 0.84807 0.77949 0.75949 0.78957 1.19264 1.19170 1.19479 1.19819 0.93304 0.83401 1.50375 0.89358 1.41788 1.09257 1.04762 1.62208 1.17297 0.87013 0.82821 0.85367 1.90632 1.14198 1.86995 1.58961 1.20260 0.82860 0.94913 1.08941 1.20872 0.99425 0.89536 1.07665 1.18127 0.92225 0.93675 1.07895 1.20971 0.99078 0.91232 1.01095 1.18107 0.91683 0.83377 1.03699 1.84817 1.96383 1.15136 1.35384 1.21367 0.98865 0.92698 1.00275 1.20243 0.94831 0.93920 1.04176 1.18743 0.96287 0.82784 1.04616 1.42042 1.05410 1.06801 1.63528 0.73489 0.90573 0.77036 0.83432 0.84351 0.73461 0.82099 0.82988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.60 13.05 21.68 0.28 -46.32 15 2 C -0.01 -0.32 5.50 84.96 0.47 0.15 15 3 Si 1.00 41.05 29.55 68.60 2.03 43.08 15 4 H -0.27 -10.62 7.11 99.48 0.71 -9.92 15 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 15 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 15 7 C -0.34 -18.92 9.68 84.11 0.81 -18.11 15 8 H 0.09 5.21 7.15 -2.91 -0.02 5.19 15 9 N -0.55 -28.17 5.27 -310.45 -1.64 -29.81 15 10 C 0.49 24.75 7.74 86.51 0.67 25.42 15 11 O -0.62 -35.97 16.41 -4.35 -0.07 -36.04 15 12 C 0.04 1.71 6.96 39.90 0.28 1.99 15 13 C -0.15 -5.63 10.54 22.57 0.24 -5.40 15 14 C -0.11 -3.71 6.15 -21.36 -0.13 -3.84 15 15 C -0.10 -2.77 10.04 22.65 0.23 -2.54 15 16 C 0.08 1.71 6.69 22.45 0.15 1.86 15 17 O -0.50 -9.16 13.49 -93.38 -1.26 -10.42 15 18 C -0.11 -2.24 9.95 22.40 0.22 -2.02 15 19 C -0.11 -2.53 10.06 22.35 0.22 -2.30 15 20 C 0.09 2.58 7.25 39.08 0.28 2.87 15 21 N -0.57 -19.27 6.08 -177.11 -1.08 -20.35 15 22 H 0.43 12.75 8.11 -92.71 -0.75 11.99 15 23 H 0.28 13.53 8.31 -92.71 -0.77 12.76 15 24 H 0.40 18.86 6.94 -92.71 -0.64 18.22 15 25 H 0.15 5.54 8.06 -2.91 -0.02 5.51 15 26 H 0.14 3.25 8.06 -2.91 -0.02 3.22 15 27 H 0.41 3.25 9.07 -74.05 -0.67 2.58 15 28 H 0.16 2.19 8.06 -2.91 -0.02 2.17 15 29 H 0.15 2.58 8.06 -2.91 -0.02 2.56 15 Total: -1.00 -68.42 267.56 0.88 -67.54 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.83 Total: 34.24 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 3.44 Total: -1.92 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -2.43 Total: -96.48 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.33 Total: -46.46 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -68.42 0.88 -67.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259637383.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.463 kcal (2) G-P(sol) polarization free energy of solvation -68.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds