Wall clock time and date at job start Mon Mar 30 2020 04:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35679 * 116.99528 * 2 1 4 4 N 1.32740 * 126.27319 * 359.97438 * 3 2 1 5 5 C 1.33116 * 109.00183 * 180.02562 * 4 3 2 6 6 C 1.39265 * 125.43530 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00300 * 179.97438 * 6 5 4 8 8 C 1.40376 * 119.99832 * 359.96361 * 6 5 4 9 9 N 1.30607 * 120.00028 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00108 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46505 * 90.00398 * 10 8 6 12 12 H 1.48490 * 109.47310 * 210.00377 * 10 8 6 13 13 H 1.48498 * 109.47006 * 330.00967 * 10 8 6 14 14 O 1.34930 * 109.12919 * 359.74911 * 5 4 3 15 15 C 1.35208 * 107.68079 * 0.40193 * 14 5 4 16 16 C 1.46947 * 126.63694 * 179.87714 * 15 14 5 17 17 C 1.40506 * 120.97706 * 359.68167 * 16 15 14 18 18 C 1.37800 * 118.93337 * 180.02562 * 17 16 15 19 19 N 1.32004 * 120.95346 * 0.02562 * 18 17 16 20 20 C 1.32001 * 122.18301 * 0.02562 * 19 18 17 21 21 C 1.37809 * 120.94928 * 0.02562 * 20 19 18 22 22 H 1.09005 * 109.46809 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47400 * 300.00130 * 1 2 3 24 24 H 1.09006 * 109.47043 * 60.00605 * 1 2 3 25 25 H 0.97002 * 119.99601 * 179.97438 * 9 8 6 26 26 H 1.08004 * 120.52926 * 0.02562 * 17 16 15 27 27 H 1.08005 * 119.52674 * 179.97438 * 18 17 16 28 28 H 1.07996 * 119.52544 * 179.97438 * 20 19 18 29 29 H 1.07998 * 120.53131 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.4478 2.3945 -0.0005 5 6 2.3770 3.3477 -0.0009 6 6 2.1280 4.7180 -0.0009 7 1 2.9517 5.4165 -0.0008 8 6 0.8064 5.1912 -0.0013 9 7 -0.1897 4.3464 -0.0011 10 14 0.4724 7.0291 -0.0021 11 1 0.3840 7.5154 -1.4024 12 1 -0.8090 7.2997 0.6977 13 1 1.5768 7.7332 0.6976 14 8 3.5985 2.7746 0.0049 15 6 3.4231 1.4339 0.0000 16 6 4.4785 0.4115 0.0010 17 6 5.8361 0.7735 0.0008 18 6 6.7910 -0.2201 0.0012 19 7 6.4452 -1.4940 0.0012 20 6 5.1829 -1.8800 0.0003 21 6 4.1596 -0.9569 -0.0012 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -1.1029 4.6735 -0.0010 26 1 6.1265 1.8137 0.0004 27 1 7.8374 0.0474 0.0007 28 1 4.9487 -2.9342 -0.0001 29 1 3.1292 -1.2802 -0.0023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259641548.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:41 Heat of formation + Delta-G solvation = 6.893058 kcal Electronic energy + Delta-G solvation = -17046.852303 eV Core-core repulsion = 14129.805151 eV Total energy + Delta-G solvation = -2917.047152 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.22563 -39.06444 -37.67925 -34.35445 -32.38502 -32.28286 -30.53604 -28.96139 -27.07596 -25.43158 -22.75655 -22.52042 -20.78956 -20.36010 -17.93711 -16.92055 -16.39313 -15.52437 -15.32785 -15.28285 -14.99538 -14.19136 -14.18460 -13.80725 -13.12643 -13.08109 -12.95607 -12.19186 -11.86523 -11.57977 -11.34054 -11.06126 -10.96118 -10.76730 -10.58776 -10.08018 -9.41841 -8.96226 -8.95561 -8.64333 -8.56568 -7.11380 -7.08094 -4.97617 1.57559 1.81291 2.73249 2.84638 2.90193 3.20838 3.56692 3.80124 4.02789 4.41599 4.62473 4.94751 5.01649 5.43209 5.71353 5.77218 5.84714 5.89542 5.91926 5.95134 6.24995 6.34166 6.41216 6.56416 6.65399 6.96355 7.08818 7.37875 7.52408 7.64347 8.00541 8.07643 8.44531 8.61721 9.46785 9.78971 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032724 B = 0.006498 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.441933 B = 4308.271542 C = 5148.568321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.297 6.297 3 C 0.280 3.720 4 N -0.564 5.564 5 C 0.360 3.640 6 C -0.402 4.402 7 H 0.104 0.896 8 C 0.070 3.930 9 N -0.705 5.705 10 Si 0.935 3.065 11 H -0.263 1.263 12 H -0.271 1.271 13 H -0.256 1.256 14 O -0.232 6.232 15 C -0.221 4.221 16 C 0.113 3.887 17 C -0.206 4.206 18 C 0.101 3.899 19 N -0.529 5.529 20 C 0.103 3.897 21 C -0.200 4.200 22 H 0.084 0.916 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.287 0.713 26 H 0.127 0.873 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -2.296 -0.007 2.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.205 6.205 3 C 0.103 3.897 4 N -0.306 5.306 5 C 0.183 3.817 6 C -0.435 4.435 7 H 0.122 0.878 8 C -0.159 4.159 9 N -0.327 5.327 10 Si 0.757 3.243 11 H -0.188 1.188 12 H -0.196 1.196 13 H -0.179 1.179 14 O -0.130 6.130 15 C -0.274 4.274 16 C 0.105 3.895 17 C -0.226 4.226 18 C -0.054 4.054 19 N -0.241 5.241 20 C -0.052 4.052 21 C -0.220 4.220 22 H 0.102 0.898 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.145 0.855 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.273 -3.018 0.000 3.030 hybrid contribution -0.575 1.406 -0.003 1.519 sum -0.302 -1.612 -0.004 1.640 Atomic orbital electron populations 1.22751 0.78326 1.01374 1.02602 1.86001 1.21772 1.23575 1.89180 1.20755 0.88828 0.85950 0.94142 1.71333 1.30376 0.95432 1.33419 1.21664 0.75392 0.94087 0.90549 1.18417 0.94303 0.86964 1.43787 0.87814 1.26062 0.94919 1.01769 0.93113 1.69949 1.00451 1.36844 1.25500 0.85851 0.79229 0.79391 0.79786 1.18765 1.19550 1.17906 1.84572 1.33354 1.16603 1.78498 1.19352 0.90244 0.81598 1.36188 1.17810 0.90465 0.90491 0.90771 1.22064 0.92753 1.00767 1.07063 1.22343 0.99098 0.88110 0.95821 1.67544 1.20593 1.19149 1.16816 1.22333 0.87852 0.99210 0.95824 1.22091 1.01277 0.92079 1.06591 0.89781 0.92654 0.92643 0.90224 0.85516 0.83853 0.83718 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 10.71 101.05 1.08 1.88 15 2 O -0.30 -6.39 8.22 -18.74 -0.15 -6.54 15 3 C 0.28 7.03 7.69 -16.64 -0.13 6.90 15 4 N -0.56 -15.17 8.76 -12.98 -0.11 -15.28 15 5 C 0.36 9.69 7.69 -16.61 -0.13 9.56 15 6 C -0.40 -9.99 9.43 -38.40 -0.36 -10.35 15 7 H 0.10 2.35 7.85 -52.49 -0.41 1.94 15 8 C 0.07 1.60 5.50 -17.27 -0.09 1.51 15 9 N -0.71 -16.99 11.84 55.57 0.66 -16.34 15 10 Si 0.94 16.51 29.56 -169.99 -5.03 11.49 15 11 H -0.26 -4.57 7.11 56.52 0.40 -4.17 15 12 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 13 H -0.26 -4.42 7.11 56.52 0.40 -4.02 15 14 O -0.23 -6.11 10.72 1.40 0.02 -6.09 15 15 C -0.22 -5.54 7.18 -35.53 -0.26 -5.80 15 16 C 0.11 2.48 5.91 -104.66 -0.62 1.86 15 17 C -0.21 -4.06 9.85 -38.89 -0.38 -4.44 15 18 C 0.10 1.79 11.16 -17.64 -0.20 1.59 15 19 N -0.53 -9.74 10.34 -13.39 -0.14 -9.87 15 20 C 0.10 1.80 11.17 -17.64 -0.20 1.61 15 21 C -0.20 -3.91 9.64 -38.88 -0.37 -4.29 15 22 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.05 1.03 8.14 -51.93 -0.42 0.60 15 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.29 6.10 8.29 -40.82 -0.34 5.76 15 26 H 0.13 2.41 8.03 -52.48 -0.42 1.99 15 27 H 0.14 2.03 8.06 -52.48 -0.42 1.61 15 28 H 0.15 2.03 8.06 -52.49 -0.42 1.60 15 29 H 0.14 2.63 5.81 -52.49 -0.31 2.32 15 LS Contribution 267.23 15.07 4.03 4.03 Total: -1.00 -29.11 267.23 -4.77 -33.88 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -2.39 Total: 4.70 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.66 Total: 0.04 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.41 Total: -41.49 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.14 Total: -12.64 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.49 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.11 -4.77 -33.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259641548.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.773 kcal (2) G-P(sol) polarization free energy of solvation -29.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds