Wall clock time and date at job start Mon Mar 30 2020 04:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35679 * 116.99528 * 2 1 4 4 N 1.32740 * 126.27319 * 359.97438 * 3 2 1 5 5 C 1.33116 * 109.00183 * 180.02562 * 4 3 2 6 6 C 1.39265 * 125.43530 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00300 * 179.97438 * 6 5 4 8 8 C 1.40376 * 119.99832 * 359.96361 * 6 5 4 9 9 N 1.30607 * 120.00028 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00108 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46505 * 90.00398 * 10 8 6 12 12 H 1.48490 * 109.47310 * 210.00377 * 10 8 6 13 13 H 1.48498 * 109.47006 * 330.00967 * 10 8 6 14 14 O 1.34930 * 109.12919 * 359.74911 * 5 4 3 15 15 C 1.35208 * 107.68079 * 0.40193 * 14 5 4 16 16 C 1.46947 * 126.63694 * 179.87714 * 15 14 5 17 17 C 1.40506 * 120.97706 * 359.68167 * 16 15 14 18 18 C 1.37800 * 118.93337 * 180.02562 * 17 16 15 19 19 N 1.32004 * 120.95346 * 0.02562 * 18 17 16 20 20 C 1.32001 * 122.18301 * 0.02562 * 19 18 17 21 21 C 1.37809 * 120.94928 * 0.02562 * 20 19 18 22 22 H 1.09005 * 109.46809 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47400 * 300.00130 * 1 2 3 24 24 H 1.09006 * 109.47043 * 60.00605 * 1 2 3 25 25 H 0.97002 * 119.99601 * 179.97438 * 9 8 6 26 26 H 1.08004 * 120.52926 * 0.02562 * 17 16 15 27 27 H 1.08005 * 119.52674 * 179.97438 * 18 17 16 28 28 H 1.07996 * 119.52544 * 179.97438 * 20 19 18 29 29 H 1.07998 * 120.53131 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.4478 2.3945 -0.0005 5 6 2.3770 3.3477 -0.0009 6 6 2.1280 4.7180 -0.0009 7 1 2.9517 5.4165 -0.0008 8 6 0.8064 5.1912 -0.0013 9 7 -0.1897 4.3464 -0.0011 10 14 0.4724 7.0291 -0.0021 11 1 0.3840 7.5154 -1.4024 12 1 -0.8090 7.2997 0.6977 13 1 1.5768 7.7332 0.6976 14 8 3.5985 2.7746 0.0049 15 6 3.4231 1.4339 0.0000 16 6 4.4785 0.4115 0.0010 17 6 5.8361 0.7735 0.0008 18 6 6.7910 -0.2201 0.0012 19 7 6.4452 -1.4940 0.0012 20 6 5.1829 -1.8800 0.0003 21 6 4.1596 -0.9569 -0.0012 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -1.1029 4.6735 -0.0010 26 1 6.1265 1.8137 0.0004 27 1 7.8374 0.0474 0.0007 28 1 4.9487 -2.9342 -0.0001 29 1 3.1292 -1.2802 -0.0023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259641548.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:41 Heat of formation + Delta-G solvation = -14.696175 kcal Electronic energy + Delta-G solvation = -17047.788483 eV Core-core repulsion = 14129.805151 eV Total energy + Delta-G solvation = -2917.983332 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.10592 -40.57804 -39.36820 -36.14566 -34.19471 -33.96350 -32.01954 -30.76667 -28.69371 -27.10667 -24.28434 -24.19683 -22.59874 -22.11815 -19.75698 -18.68873 -17.99122 -17.35108 -16.94852 -16.82982 -16.53029 -15.93372 -15.76004 -15.43262 -14.68660 -14.63241 -14.36379 -13.95005 -13.52444 -13.07746 -12.92142 -12.68439 -12.64452 -12.31261 -12.02065 -11.73968 -11.05318 -10.77476 -10.70449 -10.32910 -10.02199 -8.91537 -8.83488 -6.85517 -0.08575 0.34064 1.17802 1.38460 1.57108 1.61130 2.06749 2.14927 2.25011 2.62597 3.06076 3.09745 3.68795 3.93530 4.08143 4.19030 4.32549 4.39094 4.41609 4.48253 4.71276 4.82072 4.87871 4.93145 5.00705 5.35443 5.42690 5.71887 5.79740 5.89169 6.16902 6.26794 6.61091 7.14263 7.56470 8.10377 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032724 B = 0.006498 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.441933 B = 4308.271542 C = 5148.568321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.295 6.295 3 C 0.258 3.742 4 N -0.589 5.589 5 C 0.324 3.676 6 C -0.426 4.426 7 H 0.116 0.884 8 C 0.029 3.971 9 N -0.743 5.743 10 Si 1.019 2.981 11 H -0.255 1.255 12 H -0.260 1.260 13 H -0.248 1.248 14 O -0.246 6.246 15 C -0.241 4.241 16 C 0.081 3.919 17 C -0.213 4.213 18 C 0.111 3.889 19 N -0.529 5.529 20 C 0.112 3.888 21 C -0.201 4.201 22 H 0.136 0.864 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.297 0.703 26 H 0.126 0.874 27 H 0.183 0.817 28 H 0.186 0.814 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 -2.759 0.001 2.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.204 6.204 3 C 0.083 3.917 4 N -0.332 5.332 5 C 0.148 3.852 6 C -0.458 4.458 7 H 0.134 0.866 8 C -0.196 4.196 9 N -0.365 5.365 10 Si 0.835 3.165 11 H -0.180 1.180 12 H -0.184 1.184 13 H -0.171 1.171 14 O -0.146 6.146 15 C -0.293 4.293 16 C 0.073 3.927 17 C -0.233 4.233 18 C -0.044 4.044 19 N -0.240 5.240 20 C -0.043 4.043 21 C -0.222 4.222 22 H 0.154 0.846 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.109 0.891 26 H 0.144 0.856 27 H 0.200 0.800 28 H 0.203 0.797 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.958 -3.529 0.008 3.657 hybrid contribution -0.682 1.356 -0.007 1.518 sum 0.276 -2.173 0.001 2.191 Atomic orbital electron populations 1.22981 0.76488 1.04249 1.01256 1.85996 1.23495 1.21860 1.89049 1.20966 0.89277 0.86512 0.94930 1.71253 1.30908 0.96151 1.34853 1.22286 0.75672 0.95164 0.92128 1.18992 0.96021 0.86557 1.44224 0.86635 1.27210 0.93657 1.07001 0.91769 1.70009 1.01356 1.39571 1.25571 0.84659 0.79430 0.72238 0.80131 1.17965 1.18439 1.17138 1.84523 1.33615 1.17607 1.78818 1.20006 0.91438 0.81591 1.36260 1.18107 0.90848 0.90941 0.92795 1.22218 0.92374 1.01579 1.07142 1.22892 1.00437 0.87298 0.93781 1.67701 1.20866 1.19306 1.16159 1.22931 0.86933 1.00704 0.93688 1.22247 1.02188 0.91389 1.06345 0.84647 0.94005 0.93989 0.89136 0.85567 0.79981 0.79663 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 10.71 113.37 1.21 2.82 15 2 O -0.30 -12.95 8.22 -89.97 -0.74 -13.68 15 3 C 0.26 13.51 7.69 84.89 0.65 14.16 15 4 N -0.59 -33.24 8.76 -420.41 -3.68 -36.93 15 5 C 0.32 18.34 7.69 84.75 0.65 18.99 15 6 C -0.43 -21.86 9.43 23.04 0.22 -21.64 15 7 H 0.12 5.39 7.85 -2.91 -0.02 5.37 15 8 C 0.03 1.32 5.50 85.40 0.47 1.79 15 9 N -0.74 -36.68 11.84 21.90 0.26 -36.42 15 10 Si 1.02 33.35 29.56 68.60 2.03 35.38 15 11 H -0.26 -8.01 7.11 99.48 0.71 -7.31 15 12 H -0.26 -8.01 7.11 99.48 0.71 -7.30 15 13 H -0.25 -7.76 7.11 99.48 0.71 -7.05 15 14 O -0.25 -13.66 10.72 -17.90 -0.19 -13.86 15 15 C -0.24 -12.54 7.18 24.89 0.18 -12.36 15 16 C 0.08 3.60 5.91 -19.89 -0.12 3.48 15 17 C -0.21 -8.24 9.85 22.72 0.22 -8.02 15 18 C 0.11 3.61 11.16 84.56 0.94 4.55 15 19 N -0.53 -17.69 10.34 -196.29 -2.03 -19.72 15 20 C 0.11 3.60 11.17 84.57 0.94 4.55 15 21 C -0.20 -7.66 9.64 22.72 0.22 -7.44 15 22 H 0.14 3.38 8.14 -2.38 -0.02 3.36 15 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 15 24 H 0.04 1.59 8.14 -2.38 -0.02 1.58 15 25 H 0.30 12.84 8.29 -92.71 -0.77 12.07 15 26 H 0.13 4.82 8.03 -2.91 -0.02 4.80 15 27 H 0.18 4.44 8.06 -2.91 -0.02 4.42 15 28 H 0.19 4.37 8.06 -2.91 -0.02 4.34 15 29 H 0.14 5.21 5.81 -2.91 -0.02 5.19 15 Total: -1.00 -65.73 267.23 2.42 -63.31 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.18 Total: 21.03 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.60 Total: 0.90 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -5.45 Total: -93.07 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.93 Total: -27.54 kcal Atomic # 14 Polarization: 33.35 SS G_CDS: 2.03 Total: 35.38 kcal Total: -65.73 2.42 -63.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259641548.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.614 kcal (2) G-P(sol) polarization free energy of solvation -65.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds