Wall clock time and date at job start Mon Mar 30 2020 03:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38321 * 119.87821 * 2 1 4 4 C 1.38013 * 120.12845 * 180.02562 * 3 2 1 5 5 C 1.39366 * 119.86971 * 359.97427 * 4 3 2 6 6 C 1.48336 * 120.12116 * 180.02562 * 5 4 3 7 7 N 1.30704 * 125.87036 * 325.02185 * 6 5 4 8 8 O 1.41665 * 107.82568 * 179.97438 * 7 6 5 9 9 N 1.41646 * 107.63883 * 0.02562 * 8 7 6 10 10 C 1.30382 * 107.93396 * 359.97438 * 9 8 7 11 11 O 1.35558 * 125.83317 * 179.97438 * 10 9 8 12 12 C 1.34848 * 116.99887 * 359.97438 * 11 10 9 13 13 H 1.07999 * 119.99400 * 359.97438 * 12 11 10 14 14 C 1.38688 * 120.00146 * 180.02562 * 12 11 10 15 15 N 1.31527 * 119.99594 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99987 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47139 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47348 * 119.99712 * 16 14 12 19 19 H 1.48494 * 109.47222 * 239.99788 * 16 14 12 20 20 C 1.39373 * 119.75608 * 0.27313 * 5 4 3 21 21 C 1.38013 * 119.86927 * 359.47546 * 20 5 4 22 22 H 1.09001 * 109.47187 * 89.99986 * 1 2 3 23 23 H 1.09003 * 109.47046 * 210.00533 * 1 2 3 24 24 H 1.08997 * 109.46839 * 330.00115 * 1 2 3 25 25 H 1.08002 * 119.93718 * 359.97438 * 3 2 1 26 26 H 1.07996 * 120.06591 * 179.97438 * 4 3 2 27 27 H 0.97001 * 119.99136 * 180.02562 * 15 14 12 28 28 H 1.07997 * 120.06494 * 179.70204 * 20 5 4 29 29 H 1.08002 * 119.93087 * 180.22311 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1994 0.0000 4 6 3.5762 1.2054 -0.0005 5 6 4.2756 -0.0001 -0.0005 6 6 5.7589 -0.0001 -0.0005 7 7 6.5248 0.8677 -0.6077 8 8 7.8718 0.5085 -0.3556 9 7 7.8617 -0.6523 0.4561 10 6 6.6184 -0.9740 0.6811 11 8 6.1927 -2.0290 1.4183 12 6 7.1411 -2.8151 1.9669 13 1 8.1857 -2.5910 1.8091 14 6 6.7750 -3.9119 2.7326 15 7 5.5028 -4.1850 2.9242 16 14 8.0889 -5.0012 3.4919 17 1 9.4323 -4.4831 3.1285 18 1 7.9403 -4.9996 4.9694 19 1 7.9386 -6.3874 2.9809 20 6 3.5761 -1.2056 -0.0058 21 6 2.1960 -1.1995 0.0001 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6531 2.1329 -0.0004 26 1 4.1132 2.1424 -0.0010 27 1 5.2468 -4.9520 3.4601 28 1 4.1130 -2.1426 -0.0106 29 1 1.6530 -2.1331 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259653959.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:33 Heat of formation + Delta-G solvation = 77.582387 kcal Electronic energy + Delta-G solvation = -16789.044066 eV Core-core repulsion = 13875.062233 eV Total energy + Delta-G solvation = -2913.981833 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22618 -38.89729 -37.55925 -33.75310 -32.59932 -31.16554 -30.83326 -30.52746 -26.98163 -25.76100 -22.95575 -22.28211 -21.34302 -20.13474 -18.06669 -17.39513 -16.20965 -15.43002 -15.14837 -14.94419 -14.64072 -14.29804 -13.73146 -13.48427 -13.27651 -13.18682 -12.89125 -12.27403 -12.22786 -11.99440 -11.44884 -11.31176 -11.20000 -10.86596 -10.77980 -10.50922 -10.29061 -9.94099 -9.47529 -8.75979 -8.59241 -8.25909 -6.69770 -4.34568 0.91086 1.60190 1.84537 2.91747 3.03591 3.12610 3.16260 3.42303 3.72146 3.91641 4.13838 4.37868 4.83753 4.91182 4.98424 5.16935 5.24426 5.40325 5.56217 5.59575 5.77761 5.87590 6.08232 6.14094 6.21486 6.32011 6.56750 6.72466 6.74893 7.10759 7.12088 7.68865 8.04377 8.74218 9.23914 10.45922 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021138 B = 0.007272 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.282431 B = 3849.313837 C = 5067.623524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C -0.130 4.130 4 C -0.080 4.080 5 C -0.041 4.041 6 C 0.137 3.863 7 N -0.291 5.291 8 O -0.001 6.001 9 N -0.376 5.376 10 C 0.241 3.759 11 O -0.139 6.139 12 C -0.390 4.390 13 H 0.103 0.897 14 C 0.047 3.953 15 N -0.852 5.852 16 Si 0.950 3.050 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.059 4.059 21 C -0.120 4.120 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.275 0.725 28 H 0.140 0.860 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 4.713 -3.576 10.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C -0.148 4.148 4 C -0.100 4.100 5 C -0.042 4.042 6 C -0.048 4.048 7 N -0.034 5.034 8 O -0.130 6.130 9 N -0.165 5.165 10 C 0.027 3.973 11 O -0.029 6.029 12 C -0.468 4.468 13 H 0.120 0.880 14 C -0.160 4.160 15 N -0.486 5.486 16 Si 0.774 3.226 17 H -0.186 1.186 18 H -0.198 1.198 19 H -0.198 1.198 20 C -0.078 4.078 21 C -0.138 4.138 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.143 0.857 26 H 0.145 0.855 27 H 0.085 0.915 28 H 0.158 0.842 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.547 5.149 -3.880 10.706 hybrid contribution 0.152 -0.963 0.751 1.231 sum -8.394 4.186 -3.128 9.888 Atomic orbital electron populations 1.20809 0.91186 1.02858 1.02223 1.20055 0.96104 0.93229 0.98175 1.20858 0.93510 0.97607 1.02846 1.21152 0.94199 0.96883 0.97727 1.17774 0.86680 0.94604 1.05179 1.23440 0.94856 0.91588 0.94878 1.79735 0.91322 1.17341 1.15034 1.93113 1.16639 1.39264 1.64012 1.80289 1.14603 1.02876 1.18751 1.24240 0.88181 0.91344 0.93554 1.84125 1.34138 1.30039 1.54603 1.21572 0.88104 1.06454 1.30672 0.87960 1.25392 0.97945 0.96616 0.96056 1.70026 1.15310 1.27305 1.36001 0.85490 0.79543 0.78900 0.78687 1.18621 1.19820 1.19813 1.21376 0.94247 0.97730 0.94471 1.20967 0.93646 0.97736 1.01475 0.91158 0.91344 0.91578 0.85732 0.85540 0.91513 0.84216 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 15 2 C -0.07 -0.97 5.88 -104.56 -0.62 -1.58 15 3 C -0.13 -1.70 9.68 -39.63 -0.38 -2.08 15 4 C -0.08 -1.24 9.75 -39.24 -0.38 -1.63 15 5 C -0.04 -0.76 5.86 -104.90 -0.61 -1.37 15 6 C 0.14 2.97 6.90 -80.78 -0.56 2.41 15 7 N -0.29 -6.30 12.93 34.51 0.45 -5.85 15 8 O 0.00 -0.02 13.63 12.24 0.17 0.15 15 9 N -0.38 -9.57 11.85 31.80 0.38 -9.19 15 10 C 0.24 6.03 7.85 -14.75 -0.12 5.91 15 11 O -0.14 -3.79 8.81 0.59 0.01 -3.79 15 12 C -0.39 -10.77 9.73 30.90 0.30 -10.47 15 13 H 0.10 2.81 7.03 -52.49 -0.37 2.44 15 14 C 0.05 1.23 5.49 -17.52 -0.10 1.13 15 15 N -0.85 -23.19 13.67 55.48 0.76 -22.43 15 16 Si 0.95 20.04 29.55 -169.99 -5.02 15.02 15 17 H -0.26 -5.48 7.11 56.52 0.40 -5.08 15 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 20 C -0.06 -1.05 9.36 -39.24 -0.37 -1.42 15 21 C -0.12 -1.77 9.68 -39.63 -0.38 -2.16 15 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.07 0.60 8.08 -51.93 -0.42 0.18 15 24 H 0.07 0.53 8.08 -51.93 -0.42 0.11 15 25 H 0.12 1.25 8.06 -52.49 -0.42 0.83 15 26 H 0.13 1.82 8.06 -52.49 -0.42 1.40 15 27 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 28 H 0.14 2.76 7.30 -52.49 -0.38 2.38 15 29 H 0.13 1.63 8.06 -52.49 -0.42 1.21 15 LS Contribution 273.08 15.07 4.12 4.12 Total: -1.00 -29.75 273.08 -4.43 -34.18 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -2.42 Total: -0.25 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -2.86 Total: -11.96 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 1.58 Total: -37.47 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: 0.17 Total: -3.64 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.75 -4.43 -34.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259653959.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.764 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds