Wall clock time and date at job start Mon Mar 30 2020 03:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38321 * 119.87821 * 2 1 4 4 C 1.38013 * 120.12845 * 180.02562 * 3 2 1 5 5 C 1.39366 * 119.86971 * 359.97427 * 4 3 2 6 6 C 1.48336 * 120.12116 * 180.02562 * 5 4 3 7 7 N 1.30704 * 125.87036 * 325.02185 * 6 5 4 8 8 O 1.41665 * 107.82568 * 179.97438 * 7 6 5 9 9 N 1.41646 * 107.63883 * 0.02562 * 8 7 6 10 10 C 1.30382 * 107.93396 * 359.97438 * 9 8 7 11 11 O 1.35558 * 125.83317 * 179.97438 * 10 9 8 12 12 C 1.34848 * 116.99887 * 359.97438 * 11 10 9 13 13 H 1.07999 * 119.99400 * 359.97438 * 12 11 10 14 14 C 1.38688 * 120.00146 * 180.02562 * 12 11 10 15 15 N 1.31527 * 119.99594 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99987 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47139 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47348 * 119.99712 * 16 14 12 19 19 H 1.48494 * 109.47222 * 239.99788 * 16 14 12 20 20 C 1.39373 * 119.75608 * 0.27313 * 5 4 3 21 21 C 1.38013 * 119.86927 * 359.47546 * 20 5 4 22 22 H 1.09001 * 109.47187 * 89.99986 * 1 2 3 23 23 H 1.09003 * 109.47046 * 210.00533 * 1 2 3 24 24 H 1.08997 * 109.46839 * 330.00115 * 1 2 3 25 25 H 1.08002 * 119.93718 * 359.97438 * 3 2 1 26 26 H 1.07996 * 120.06591 * 179.97438 * 4 3 2 27 27 H 0.97001 * 119.99136 * 180.02562 * 15 14 12 28 28 H 1.07997 * 120.06494 * 179.70204 * 20 5 4 29 29 H 1.08002 * 119.93087 * 180.22311 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1994 0.0000 4 6 3.5762 1.2054 -0.0005 5 6 4.2756 -0.0001 -0.0005 6 6 5.7589 -0.0001 -0.0005 7 7 6.5248 0.8677 -0.6077 8 8 7.8718 0.5085 -0.3556 9 7 7.8617 -0.6523 0.4561 10 6 6.6184 -0.9740 0.6811 11 8 6.1927 -2.0290 1.4183 12 6 7.1411 -2.8151 1.9669 13 1 8.1857 -2.5910 1.8091 14 6 6.7750 -3.9119 2.7326 15 7 5.5028 -4.1850 2.9242 16 14 8.0889 -5.0012 3.4919 17 1 9.4323 -4.4831 3.1285 18 1 7.9403 -4.9996 4.9694 19 1 7.9386 -6.3874 2.9809 20 6 3.5761 -1.2056 -0.0058 21 6 2.1960 -1.1995 0.0001 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6531 2.1329 -0.0004 26 1 4.1132 2.1424 -0.0010 27 1 5.2468 -4.9520 3.4601 28 1 4.1130 -2.1426 -0.0106 29 1 1.6530 -2.1331 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259653959.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:32 Heat of formation + Delta-G solvation = 57.809845 kcal Electronic energy + Delta-G solvation = -16789.901468 eV Core-core repulsion = 13875.062233 eV Total energy + Delta-G solvation = -2914.839235 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.04179 -40.16150 -39.54740 -35.19865 -34.59204 -32.59128 -32.55727 -31.95781 -28.16951 -27.73834 -24.46842 -23.59123 -23.02368 -21.63810 -20.04177 -19.21789 -17.85387 -17.23220 -16.71788 -16.26602 -16.19569 -15.88221 -15.21353 -15.18561 -14.64371 -14.45878 -14.41136 -13.93409 -13.41636 -13.19516 -12.99338 -12.87224 -12.81875 -12.34818 -12.17779 -12.08144 -11.94770 -11.80297 -11.40289 -10.54724 -9.95941 -9.54587 -8.70039 -6.46620 -0.64940 0.28166 0.41158 1.16908 1.27331 1.45160 1.46744 1.63451 2.01203 2.32334 2.42332 2.78661 2.82688 3.54919 3.86795 3.97772 4.02257 4.15130 4.37129 4.43248 4.56928 4.79425 4.84440 4.93150 5.01841 5.09342 5.26884 5.37100 5.45353 5.60795 5.68887 5.96523 6.12684 6.70176 7.19977 8.48796 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021138 B = 0.007272 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.282431 B = 3849.313837 C = 5067.623524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 C -0.121 4.121 4 C -0.079 4.079 5 C -0.076 4.076 6 C 0.151 3.849 7 N -0.286 5.286 8 O -0.011 6.011 9 N -0.396 5.396 10 C 0.231 3.769 11 O -0.158 6.158 12 C -0.427 4.427 13 H 0.094 0.906 14 C 0.006 3.994 15 N -0.886 5.886 16 Si 1.022 2.978 17 H -0.263 1.263 18 H -0.258 1.258 19 H -0.257 1.257 20 C -0.079 4.079 21 C -0.126 4.126 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.167 0.833 26 H 0.137 0.863 27 H 0.285 0.715 28 H 0.107 0.893 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.371 5.244 -3.306 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.060 4.060 3 C -0.138 4.138 4 C -0.099 4.099 5 C -0.078 4.078 6 C -0.034 4.034 7 N -0.032 5.032 8 O -0.139 6.139 9 N -0.183 5.183 10 C 0.016 3.984 11 O -0.048 6.048 12 C -0.505 4.505 13 H 0.112 0.888 14 C -0.197 4.197 15 N -0.521 5.521 16 Si 0.840 3.160 17 H -0.187 1.187 18 H -0.182 1.182 19 H -0.181 1.181 20 C -0.099 4.099 21 C -0.144 4.144 22 H 0.108 0.892 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.184 0.816 26 H 0.155 0.845 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.658 5.689 -3.619 12.611 hybrid contribution 0.633 -1.040 0.599 1.357 sum -10.024 4.649 -3.020 11.455 Atomic orbital electron populations 1.20923 0.87868 1.04310 1.03855 1.20553 0.98359 0.92193 0.94931 1.21327 0.92386 0.99445 1.00664 1.21357 0.95531 0.95867 0.97106 1.17877 0.84810 0.96246 1.08845 1.23851 0.96440 0.89904 0.93162 1.79736 0.90156 1.17671 1.15620 1.93081 1.18215 1.38597 1.63994 1.80205 1.15433 1.03667 1.18962 1.24693 0.89068 0.91372 0.93315 1.84128 1.34513 1.30798 1.55396 1.21842 0.88022 1.07953 1.32645 0.88847 1.26562 1.00487 0.97131 0.95535 1.70099 1.17232 1.28219 1.36534 0.84504 0.76188 0.77058 0.78272 1.18655 1.18245 1.18145 1.21240 0.95764 0.96321 0.96546 1.21215 0.92259 0.99735 1.01153 0.89200 0.90649 0.89490 0.81598 0.84543 0.90533 0.87489 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 15 2 C -0.06 -1.34 5.88 -19.82 -0.12 -1.45 15 3 C -0.12 -2.70 9.68 22.24 0.22 -2.49 15 4 C -0.08 -2.33 9.75 22.49 0.22 -2.11 15 5 C -0.08 -2.86 5.86 -20.04 -0.12 -2.98 15 6 C 0.15 6.78 6.90 44.21 0.30 7.08 15 7 N -0.29 -12.64 12.93 -44.73 -0.58 -13.22 15 8 O -0.01 -0.54 13.63 71.16 0.97 0.43 15 9 N -0.40 -21.00 11.85 -167.17 -1.98 -22.98 15 10 C 0.23 12.09 7.85 87.12 0.68 12.78 15 11 O -0.16 -9.05 8.81 -20.82 -0.18 -9.23 15 12 C -0.43 -24.60 9.73 67.93 0.66 -23.94 15 13 H 0.09 5.38 7.03 -2.91 -0.02 5.36 15 14 C 0.01 0.33 5.49 84.85 0.47 0.79 15 15 N -0.89 -49.10 13.67 21.62 0.30 -48.80 15 16 Si 1.02 41.03 29.55 68.60 2.03 43.05 15 17 H -0.26 -10.45 7.11 99.48 0.71 -9.75 15 18 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 19 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 20 C -0.08 -2.91 9.36 22.49 0.21 -2.70 15 21 C -0.13 -3.57 9.68 22.24 0.22 -3.35 15 22 H 0.09 0.99 8.14 -2.39 -0.02 0.97 15 23 H 0.07 0.99 8.08 -2.39 -0.02 0.97 15 24 H 0.09 0.91 8.08 -2.39 -0.02 0.89 15 25 H 0.17 2.39 8.06 -2.91 -0.02 2.37 15 26 H 0.14 3.68 8.06 -2.91 -0.02 3.66 15 27 H 0.29 14.20 8.31 -92.71 -0.77 13.43 15 28 H 0.11 4.58 7.30 -2.91 -0.02 4.56 15 29 H 0.15 3.51 8.06 -2.91 -0.02 3.49 15 Total: -1.00 -67.14 273.08 5.19 -61.95 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.18 Total: 8.03 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 3.46 Total: -19.23 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.26 Total: -85.00 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.79 Total: -8.81 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Total: -67.14 5.19 -61.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259653959.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.761 kcal (2) G-P(sol) polarization free energy of solvation -67.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds