Wall clock time and date at job start Mon Mar 30 2020 04:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.41065 * 126.70937 * 2 1 4 4 C 1.36797 * 103.88084 * 179.73300 * 3 2 1 5 5 C 1.47835 * 126.92810 * 179.97438 * 4 3 2 6 6 C 1.40040 * 120.56472 * 179.72139 * 5 4 3 7 7 N 1.32261 * 118.60632 * 179.77058 * 6 5 4 8 8 C 1.32129 * 119.64519 * 0.50736 * 7 6 5 9 9 C 1.50694 * 119.42835 * 179.71033 * 8 7 6 10 10 C 1.50700 * 109.47393 * 270.02364 * 9 8 7 11 11 H 1.07995 * 119.99678 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00021 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00132 * 359.97438 * 12 10 9 14 14 Si 1.86810 * 119.99973 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46629 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.46931 * 119.99538 * 14 12 10 17 17 H 1.48494 * 109.46984 * 239.99887 * 14 12 10 18 18 N 1.32049 * 121.14157 * 359.73686 * 8 7 6 19 19 N 1.28747 * 121.49733 * 359.97438 * 18 8 7 20 20 O 1.34517 * 106.14665 * 0.02562 * 4 3 2 21 21 N 1.20898 * 111.45932 * 359.97438 * 20 4 3 22 22 H 1.08997 * 109.47363 * 90.00031 * 1 2 3 23 23 H 1.09007 * 109.47186 * 210.00245 * 1 2 3 24 24 H 1.09002 * 109.47229 * 330.00648 * 1 2 3 25 25 H 1.07999 * 128.05719 * 359.75171 * 3 2 1 26 26 H 1.08001 * 120.68999 * 0.02562 * 6 5 4 27 27 H 1.08999 * 109.47205 * 30.02754 * 9 8 7 28 28 H 1.09012 * 109.47042 * 150.02342 * 9 8 7 29 29 H 0.97005 * 119.99809 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3501 1.1309 0.0000 4 6 3.6109 0.6002 0.0062 5 6 4.8881 1.3448 0.0084 6 6 6.1106 0.6618 0.0208 7 7 7.2298 1.3666 0.0176 8 6 7.1709 2.6865 0.0132 9 6 8.4491 3.4847 0.0163 10 6 8.8693 3.7548 1.4380 11 1 8.2708 3.3851 2.2574 12 6 10.0177 4.4740 1.6927 13 7 10.7467 4.9238 0.6948 14 14 10.5389 4.8082 3.4552 15 1 9.5556 4.1987 4.3861 16 1 11.8802 4.2179 3.6950 17 1 10.5949 6.2742 3.6852 18 7 6.0114 3.3184 0.0066 19 7 4.8955 2.6762 0.0038 20 8 3.4544 -0.7359 0.0087 21 7 2.2854 -1.0442 0.0054 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 2.0664 2.1729 -0.0037 26 1 6.1388 -0.4178 0.0285 27 1 9.2308 2.9209 -0.4928 28 1 8.2880 4.4307 -0.5010 29 1 11.5549 5.4295 0.8740 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259664800.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:15 Heat of formation + Delta-G solvation = 126.521714 kcal Electronic energy + Delta-G solvation = -16343.798049 eV Core-core repulsion = 13464.231136 eV Total energy + Delta-G solvation = -2879.566913 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.06136 -41.40150 -35.22396 -34.85778 -34.29429 -33.09127 -31.12548 -28.93672 -28.45947 -25.66116 -24.91225 -23.11278 -22.39242 -20.73158 -18.43150 -17.97553 -17.82884 -16.68702 -15.99177 -15.68541 -15.10415 -14.56512 -13.91596 -13.63194 -13.34285 -13.11782 -12.87957 -12.47039 -12.02482 -11.62821 -11.53194 -11.46113 -11.31556 -10.94412 -10.81883 -10.68245 -10.21490 -10.05496 -9.61017 -8.97257 -8.79830 -8.57112 -6.20975 -4.25684 0.31590 0.87881 1.67282 2.13997 2.49605 3.23906 3.31166 3.35715 3.84840 3.91315 3.95660 4.13607 4.21303 4.35140 4.48323 4.81854 4.98166 5.11373 5.18015 5.20765 5.37465 5.43751 5.58905 5.65877 5.90427 6.31642 7.08464 7.23770 7.41390 7.70858 7.99068 7.99681 8.73480 8.78204 9.37825 10.89691 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.050193 B = 0.004287 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.715230 B = 6529.527615 C = 6596.805250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.015 3.985 3 C -0.184 4.184 4 C 0.030 3.970 5 C 0.037 3.963 6 C 0.146 3.854 7 N -0.458 5.458 8 C 0.312 3.688 9 C 0.077 3.923 10 C -0.513 4.513 11 H 0.056 0.944 12 C 0.065 3.935 13 N -0.887 5.887 14 Si 0.905 3.095 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.280 1.280 18 N -0.267 5.267 19 N -0.164 5.164 20 O 0.108 5.892 21 N -0.358 5.358 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.182 0.818 26 H 0.185 0.815 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.625 -8.631 -2.095 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.143 4.143 3 C -0.207 4.207 4 C -0.036 4.036 5 C -0.111 4.111 6 C -0.031 4.031 7 N -0.177 5.177 8 C 0.048 3.952 9 C 0.038 3.962 10 C -0.553 4.553 11 H 0.074 0.926 12 C -0.138 4.138 13 N -0.525 5.525 14 Si 0.732 3.268 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.206 1.206 18 N -0.116 5.116 19 N -0.018 5.018 20 O 0.041 5.959 21 N -0.062 5.062 22 H 0.100 0.900 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.199 0.801 26 H 0.201 0.799 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.627 -8.763 -2.151 18.045 hybrid contribution 0.258 0.068 0.963 1.000 sum -15.369 -8.696 -1.188 17.698 Atomic orbital electron populations 1.20186 0.85550 1.03967 1.03536 1.23543 0.99181 0.88626 1.02921 1.22723 0.90086 1.01545 1.06313 1.21410 0.93754 0.83503 1.04931 1.20323 0.91080 0.93936 1.05741 1.24305 0.87435 1.02453 0.88933 1.69205 1.29403 1.08699 1.10391 1.26179 0.97665 0.88229 0.83134 1.18424 0.83938 0.94117 0.99717 1.20743 1.08965 1.35666 0.89878 0.92555 1.24925 0.95909 0.95091 0.97888 1.69937 1.15519 1.36200 1.30867 0.86330 0.78536 0.78157 0.83816 1.19733 1.20655 1.20624 1.73905 0.95105 1.30018 1.12546 1.73881 1.21029 1.04082 1.02760 1.84901 1.21629 1.21544 1.67872 1.73809 0.88980 1.23901 1.19514 0.90011 0.90470 0.89734 0.80098 0.79856 0.92442 0.92410 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.47 36.00 0.38 -0.16 15 2 C 0.01 0.17 7.31 -82.19 -0.60 -0.43 15 3 C -0.18 -2.20 10.91 -39.03 -0.43 -2.63 15 4 C 0.03 0.40 7.20 -36.18 -0.26 0.14 15 5 C 0.04 0.59 6.84 -82.69 -0.57 0.02 15 6 C 0.15 2.31 11.03 -16.69 -0.18 2.12 15 7 N -0.46 -9.09 10.43 -10.26 -0.11 -9.20 15 8 C 0.31 6.91 6.90 -156.69 -1.08 5.83 15 9 C 0.08 1.94 5.43 -29.04 -0.16 1.79 15 10 C -0.51 -14.03 9.09 -34.44 -0.31 -14.34 15 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 15 12 C 0.06 1.77 5.46 -17.82 -0.10 1.68 15 13 N -0.89 -25.11 13.29 55.43 0.74 -24.38 15 14 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 15 15 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 18 N -0.27 -5.73 11.47 32.44 0.37 -5.36 15 19 N -0.16 -3.05 11.43 33.37 0.38 -2.67 15 20 O 0.11 1.43 11.11 15.89 0.18 1.60 15 21 N -0.36 -4.68 12.05 33.51 0.40 -4.28 15 22 H 0.08 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.08 0.51 8.14 -51.92 -0.42 0.09 15 24 H 0.08 0.47 8.14 -51.93 -0.42 0.04 15 25 H 0.18 1.89 8.06 -52.49 -0.42 1.47 15 26 H 0.18 2.09 8.03 -52.49 -0.42 1.67 15 27 H 0.06 1.48 8.14 -51.93 -0.42 1.06 15 28 H 0.06 1.50 8.14 -51.92 -0.42 1.08 15 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 LS Contribution 274.12 15.07 4.13 4.13 Total: -1.00 -30.00 274.12 -4.74 -34.74 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: -2.50 Total: -4.64 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.31 Total: -5.99 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 1.79 Total: -45.89 kcal Atomic # 8 Polarization: 1.43 SS G_CDS: 0.18 Total: 1.60 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.00 -4.74 -34.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259664800.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.258 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds