Wall clock time and date at job start Mon Mar 30 2020 04:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.41065 * 126.70937 * 2 1 4 4 C 1.36797 * 103.88084 * 179.73300 * 3 2 1 5 5 C 1.47835 * 126.92810 * 179.97438 * 4 3 2 6 6 C 1.40040 * 120.56472 * 179.72139 * 5 4 3 7 7 N 1.32261 * 118.60632 * 179.77058 * 6 5 4 8 8 C 1.32129 * 119.64519 * 0.50736 * 7 6 5 9 9 C 1.50694 * 119.42835 * 179.71033 * 8 7 6 10 10 C 1.50700 * 109.47393 * 270.02364 * 9 8 7 11 11 H 1.07995 * 119.99678 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00021 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00132 * 359.97438 * 12 10 9 14 14 Si 1.86810 * 119.99973 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46629 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.46931 * 119.99538 * 14 12 10 17 17 H 1.48494 * 109.46984 * 239.99887 * 14 12 10 18 18 N 1.32049 * 121.14157 * 359.73686 * 8 7 6 19 19 N 1.28747 * 121.49733 * 359.97438 * 18 8 7 20 20 O 1.34517 * 106.14665 * 0.02562 * 4 3 2 21 21 N 1.20898 * 111.45932 * 359.97438 * 20 4 3 22 22 H 1.08997 * 109.47363 * 90.00031 * 1 2 3 23 23 H 1.09007 * 109.47186 * 210.00245 * 1 2 3 24 24 H 1.09002 * 109.47229 * 330.00648 * 1 2 3 25 25 H 1.07999 * 128.05719 * 359.75171 * 3 2 1 26 26 H 1.08001 * 120.68999 * 0.02562 * 6 5 4 27 27 H 1.08999 * 109.47205 * 30.02754 * 9 8 7 28 28 H 1.09012 * 109.47042 * 150.02342 * 9 8 7 29 29 H 0.97005 * 119.99809 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3501 1.1309 0.0000 4 6 3.6109 0.6002 0.0062 5 6 4.8881 1.3448 0.0084 6 6 6.1106 0.6618 0.0208 7 7 7.2298 1.3666 0.0176 8 6 7.1709 2.6865 0.0132 9 6 8.4491 3.4847 0.0163 10 6 8.8693 3.7548 1.4380 11 1 8.2708 3.3851 2.2574 12 6 10.0177 4.4740 1.6927 13 7 10.7467 4.9238 0.6948 14 14 10.5389 4.8082 3.4552 15 1 9.5556 4.1987 4.3861 16 1 11.8802 4.2179 3.6950 17 1 10.5949 6.2742 3.6852 18 7 6.0114 3.3184 0.0066 19 7 4.8955 2.6762 0.0038 20 8 3.4544 -0.7359 0.0087 21 7 2.2854 -1.0442 0.0054 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 2.0664 2.1729 -0.0037 26 1 6.1388 -0.4178 0.0285 27 1 9.2308 2.9209 -0.4928 28 1 8.2880 4.4307 -0.5010 29 1 11.5549 5.4295 0.8740 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259664800.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:15 Heat of formation + Delta-G solvation = 106.991756 kcal Electronic energy + Delta-G solvation = -16344.644932 eV Core-core repulsion = 13464.231136 eV Total energy + Delta-G solvation = -2880.413796 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.03915 -42.88666 -36.66456 -35.89236 -35.76933 -34.87437 -32.56681 -30.17761 -29.62047 -27.07395 -26.63503 -24.24571 -24.02853 -21.83129 -19.87508 -19.06307 -18.84383 -18.71667 -17.53189 -16.72512 -16.68451 -16.36154 -14.92375 -14.61442 -14.40566 -14.18991 -14.16799 -13.80661 -13.69477 -13.28094 -13.16146 -12.87100 -12.66617 -12.60219 -12.35225 -12.21230 -11.99210 -11.46111 -11.06716 -10.68383 -10.43814 -10.11647 -8.29001 -6.41440 -0.99858 -0.54493 0.54842 1.15577 1.35674 1.40857 1.41389 1.53860 2.29448 2.45252 2.59005 2.66371 2.96052 3.06824 3.11245 3.36227 3.72726 3.90326 4.07488 4.19455 4.45704 4.72454 4.73666 4.80747 4.86525 5.16173 5.22487 5.23101 5.59599 5.81712 5.94754 6.63151 7.01856 7.25510 7.27763 8.82515 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.050193 B = 0.004287 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.715230 B = 6529.527615 C = 6596.805250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 C -0.170 4.170 4 C 0.009 3.991 5 C 0.061 3.939 6 C 0.159 3.841 7 N -0.476 5.476 8 C 0.294 3.706 9 C 0.087 3.913 10 C -0.531 4.531 11 H 0.047 0.953 12 C 0.016 3.984 13 N -0.919 5.919 14 Si 0.971 3.029 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.273 1.273 18 N -0.293 5.293 19 N -0.179 5.179 20 O 0.106 5.894 21 N -0.373 5.373 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.196 0.804 26 H 0.231 0.769 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.616 -9.856 -1.274 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C -0.193 4.193 4 C -0.056 4.056 5 C -0.088 4.088 6 C -0.019 4.019 7 N -0.196 5.196 8 C 0.029 3.971 9 C 0.047 3.953 10 C -0.569 4.569 11 H 0.066 0.934 12 C -0.184 4.184 13 N -0.557 5.557 14 Si 0.795 3.205 15 H -0.196 1.196 16 H -0.196 1.196 17 H -0.198 1.198 18 N -0.140 5.140 19 N -0.030 5.030 20 O 0.039 5.961 21 N -0.077 5.077 22 H 0.116 0.884 23 H 0.102 0.898 24 H 0.123 0.877 25 H 0.214 0.786 26 H 0.247 0.753 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.627 -9.961 -1.338 20.291 hybrid contribution 0.633 0.284 0.654 0.953 sum -16.994 -9.677 -0.684 19.568 Atomic orbital electron populations 1.20412 0.82653 1.05339 1.04985 1.24145 1.00871 0.87528 1.01078 1.23071 0.89605 1.02587 1.04005 1.21161 0.93108 0.84073 1.07303 1.20589 0.92460 0.93171 1.02607 1.25059 0.86074 1.04144 0.86615 1.69115 1.31389 1.07813 1.11248 1.25436 0.96857 0.89090 0.85760 1.18023 0.85321 0.93490 0.98448 1.20968 1.09267 1.35955 0.90747 0.93439 1.25791 0.95823 0.94695 1.02113 1.70034 1.16003 1.36733 1.32958 0.85316 0.78282 0.78277 0.78657 1.19585 1.19639 1.19787 1.73812 0.95438 1.31024 1.13731 1.73782 1.19695 1.05507 1.04010 1.84906 1.21902 1.20965 1.68289 1.73813 0.89145 1.24684 1.20100 0.88398 0.89788 0.87725 0.78647 0.75254 0.94175 0.94517 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.47 71.23 0.75 -0.06 15 2 C 0.02 0.41 7.31 43.48 0.32 0.73 15 3 C -0.17 -3.60 10.91 22.63 0.25 -3.35 15 4 C 0.01 0.22 7.20 24.47 0.18 0.40 15 5 C 0.06 1.86 6.84 41.92 0.29 2.15 15 6 C 0.16 4.75 11.03 85.07 0.94 5.69 15 7 N -0.48 -18.94 10.43 -186.37 -1.94 -20.89 15 8 C 0.29 13.42 6.90 138.57 0.96 14.38 15 9 C 0.09 4.57 5.43 29.10 0.16 4.73 15 10 C -0.53 -29.86 9.09 25.60 0.23 -29.63 15 11 H 0.05 2.69 7.74 -2.91 -0.02 2.66 15 12 C 0.02 0.88 5.46 84.65 0.46 1.34 15 13 N -0.92 -53.13 13.29 21.45 0.28 -52.84 15 14 Si 0.97 43.45 29.54 68.60 2.03 45.48 15 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 16 H -0.27 -11.65 7.11 99.48 0.71 -10.95 15 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 15 18 N -0.29 -12.87 11.47 -51.27 -0.59 -13.46 15 19 N -0.18 -6.58 11.43 -48.34 -0.55 -7.13 15 20 O 0.11 2.53 11.11 67.05 0.75 3.28 15 21 N -0.37 -8.73 12.05 -48.86 -0.59 -9.32 15 22 H 0.10 0.78 8.14 -2.39 -0.02 0.76 15 23 H 0.08 0.82 8.14 -2.38 -0.02 0.80 15 24 H 0.10 0.72 8.14 -2.39 -0.02 0.70 15 25 H 0.20 3.50 8.06 -2.91 -0.02 3.48 15 26 H 0.23 4.51 8.03 -2.91 -0.02 4.49 15 27 H 0.04 2.19 8.14 -2.39 -0.02 2.17 15 28 H 0.04 2.03 8.14 -2.38 -0.02 2.01 15 29 H 0.27 14.57 8.31 -92.70 -0.77 13.80 15 Total: -1.00 -66.01 274.12 5.09 -60.92 By element: Atomic # 1 Polarization: -3.59 SS G_CDS: 1.18 Total: -2.41 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 4.52 Total: -3.63 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -3.39 Total: -103.64 kcal Atomic # 8 Polarization: 2.53 SS G_CDS: 0.75 Total: 3.28 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.01 5.09 -60.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259664800.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.917 kcal (2) G-P(sol) polarization free energy of solvation -66.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds