Wall clock time and date at job start Mon Mar 30 2020 04:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00108 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00351 * 3 2 1 7 7 C 1.40414 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00274 * 179.72476 * 7 2 1 9 9 C 1.40365 * 120.00394 * 359.97438 * 7 2 1 10 10 N 1.33186 * 126.67591 * 179.43748 * 9 7 2 11 11 C 1.34344 * 105.48247 * 179.89345 * 10 9 7 12 12 C 1.48283 * 126.21630 * 180.17214 * 11 10 9 13 13 C 1.35803 * 126.10122 * 180.26966 * 12 11 10 14 14 N 1.36794 * 106.77238 * 179.97438 * 13 12 11 15 15 C 1.35521 * 107.39139 * 0.11793 * 14 13 12 16 16 N 1.30729 * 108.78572 * 359.58180 * 15 14 13 17 17 C 1.51578 * 109.82873 * 179.80266 * 15 14 13 18 18 C 1.54521 * 104.27910 * 343.38810 * 17 15 14 19 19 C 1.47029 * 141.54803 * 180.22447 * 14 13 12 20 20 N 1.31358 * 107.56484 * 0.37313 * 11 10 9 21 21 O 1.21266 * 110.51975 * 359.76187 * 20 11 10 22 22 H 0.97000 * 119.99431 * 359.97438 * 1 2 3 23 23 H 1.08001 * 126.60866 * 359.92126 * 13 12 11 24 24 H 1.09003 * 110.47262 * 224.69550 * 17 15 14 25 25 H 1.09000 * 110.58847 * 102.14331 * 17 15 14 26 26 H 1.09001 * 110.94906 * 267.15926 * 18 17 15 27 27 H 1.08999 * 110.94797 * 143.45378 * 18 17 15 28 28 H 1.08997 * 110.22904 * 316.07420 * 19 14 13 29 29 H 1.09001 * 110.22812 * 78.03186 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6993 1.3463 0.0006 5 1 1.8806 2.3965 -1.2124 6 1 1.8806 2.3964 1.2126 7 6 2.0074 -1.2161 -0.0005 8 1 3.0874 -1.2162 -0.0050 9 6 1.3056 -2.4317 -0.0005 10 7 1.8329 -3.6546 -0.0115 11 6 0.7861 -4.4966 -0.0041 12 6 0.8531 -5.9779 -0.0077 13 6 -0.2068 -6.8269 -0.0054 14 7 0.3039 -8.0959 -0.0109 15 6 1.6548 -7.9889 -0.0138 16 7 1.9767 -6.7219 -0.0193 17 6 2.2800 -9.3698 -0.0150 18 6 1.1309 -10.3088 0.4155 19 6 -0.1145 -9.5054 -0.0164 20 7 -0.3077 -3.7692 0.0025 21 8 -0.0327 -2.5881 0.0046 22 1 -0.4849 0.8401 0.0004 23 1 -1.2515 -6.5529 0.0006 24 1 3.1001 -9.4176 0.7015 25 1 2.6315 -9.6305 -1.0133 26 1 1.1389 -10.4653 1.4942 27 1 1.1848 -11.2594 -0.1151 28 1 -0.9274 -9.6600 0.6930 29 1 -0.4257 -9.8023 -1.0180 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259714112.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:41 Heat of formation + Delta-G solvation = 121.110563 kcal Electronic energy + Delta-G solvation = -16699.114955 eV Core-core repulsion = 13819.313397 eV Total energy + Delta-G solvation = -2879.801558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.89135 -42.04791 -36.38658 -34.03469 -33.36350 -31.70110 -30.61297 -28.18870 -27.19379 -26.26325 -23.26982 -21.53664 -21.47109 -19.93846 -19.53517 -17.63090 -16.74342 -16.02849 -15.68807 -15.37057 -14.91023 -14.07610 -13.84470 -13.61057 -13.42166 -13.11446 -12.80178 -12.32908 -11.80368 -11.56262 -11.50329 -11.43093 -11.34804 -10.43855 -10.09890 -10.03332 -9.80201 -9.52486 -9.18054 -8.79334 -8.47906 -7.56608 -7.00933 -4.92881 2.15136 2.80808 2.83175 2.98930 3.02146 3.10364 3.59521 3.80804 3.83312 4.30948 4.40300 4.50944 4.57513 5.03851 5.15284 5.18962 5.22819 5.25659 5.43021 5.47538 5.65063 5.72012 5.82373 6.44996 6.56292 6.91027 6.93375 7.31346 7.45443 8.00013 8.18976 8.38836 8.49016 8.56203 9.98707 10.44006 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.072877 B = 0.004574 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.117788 B = 6119.432130 C = 6470.247426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.070 3.930 3 Si 0.936 3.064 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.414 4.414 8 H 0.114 0.886 9 C 0.300 3.700 10 N -0.586 5.586 11 C 0.237 3.763 12 C 0.112 3.888 13 C -0.003 4.003 14 N -0.489 5.489 15 C 0.173 3.827 16 N -0.441 5.441 17 C -0.036 4.036 18 C -0.129 4.129 19 C 0.106 3.894 20 N -0.463 5.463 21 O 0.051 5.949 22 H 0.291 0.709 23 H 0.179 0.821 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.628 -14.623 0.194 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.154 4.154 3 Si 0.759 3.241 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.452 4.452 8 H 0.132 0.868 9 C 0.109 3.891 10 N -0.329 5.329 11 C -0.035 4.035 12 C -0.018 4.018 13 C -0.137 4.137 14 N -0.175 5.175 15 C -0.090 4.090 16 N -0.161 5.161 17 C -0.075 4.075 18 C -0.167 4.167 19 C -0.015 4.015 20 N -0.192 5.192 21 O 0.002 5.998 22 H 0.102 0.898 23 H 0.196 0.804 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.680 -14.818 0.176 14.834 hybrid contribution -0.641 0.722 -0.016 0.966 sum -1.321 -14.096 0.159 14.158 Atomic orbital electron populations 1.69660 1.07743 1.30595 1.31416 1.26192 0.95121 1.02254 0.91854 0.85783 0.80650 0.78870 0.78784 1.17819 1.19414 1.19413 1.18609 0.95082 0.85353 1.46172 0.86814 1.24278 0.79744 0.94089 0.90988 1.72519 1.27419 0.97987 1.34942 1.21991 0.86841 0.92006 1.02615 1.17272 0.87659 0.88826 1.08023 1.22139 1.00020 0.80629 1.10951 1.46395 1.09744 1.05699 1.55689 1.24407 0.82643 0.94741 1.07217 1.69920 1.29102 0.98961 1.18082 1.20571 0.97834 0.85195 1.03874 1.22721 0.92552 0.98402 1.03049 1.22306 0.98904 0.77224 1.03115 1.74594 1.23333 0.90980 1.30334 1.85503 1.25921 1.17481 1.70860 0.89827 0.80415 0.88525 0.88760 0.89509 0.88207 0.89384 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.01 12.05 55.57 0.67 -19.34 15 2 C 0.07 1.75 5.50 -17.28 -0.10 1.66 15 3 Si 0.94 18.17 29.56 -169.99 -5.03 13.15 15 4 H -0.25 -4.87 7.11 56.52 0.40 -4.46 15 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 6 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 7 C -0.41 -11.45 9.48 -37.96 -0.36 -11.81 15 8 H 0.11 2.99 7.85 -52.49 -0.41 2.58 15 9 C 0.30 9.06 7.80 -16.32 -0.13 8.93 15 10 N -0.59 -17.82 11.64 -11.62 -0.14 -17.95 15 11 C 0.24 6.75 8.04 -156.47 -1.26 5.49 15 12 C 0.11 2.71 7.05 -83.32 -0.59 2.12 15 13 C 0.00 -0.06 11.96 -16.21 -0.19 -0.25 15 14 N -0.49 -7.58 3.60 -111.90 -0.40 -7.98 15 15 C 0.17 2.96 8.59 -154.36 -1.33 1.64 15 16 N -0.44 -10.15 11.29 -6.99 -0.08 -10.23 15 17 C -0.04 -0.36 6.85 -26.65 -0.18 -0.54 15 18 C -0.13 -0.86 7.16 -25.22 -0.18 -1.04 15 19 C 0.11 0.95 7.78 -3.04 -0.02 0.93 15 20 N -0.46 -13.34 12.17 31.48 0.38 -12.96 15 21 O 0.05 1.56 9.71 15.17 0.15 1.71 15 22 H 0.29 6.67 8.29 -40.82 -0.34 6.33 15 23 H 0.18 3.10 8.06 -52.49 -0.42 2.68 15 24 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.09 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 15 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 15 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 15 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 15 LS Contribution 264.60 15.07 3.99 3.99 Total: -1.00 -36.09 264.60 -7.29 -43.38 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -2.51 Total: -0.88 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -4.33 Total: 7.12 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: 0.44 Total: -68.46 kcal Atomic # 8 Polarization: 1.56 SS G_CDS: 0.15 Total: 1.71 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -36.09 -7.29 -43.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259714112.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.492 kcal (2) G-P(sol) polarization free energy of solvation -36.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds