Wall clock time and date at job start Mon Mar 30 2020 04:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00108 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00351 * 3 2 1 7 7 C 1.40414 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00274 * 179.72476 * 7 2 1 9 9 C 1.40365 * 120.00394 * 359.97438 * 7 2 1 10 10 N 1.33186 * 126.67591 * 179.43748 * 9 7 2 11 11 C 1.34344 * 105.48247 * 179.89345 * 10 9 7 12 12 C 1.48283 * 126.21630 * 180.17214 * 11 10 9 13 13 C 1.35803 * 126.10122 * 180.26966 * 12 11 10 14 14 N 1.36794 * 106.77238 * 179.97438 * 13 12 11 15 15 C 1.35521 * 107.39139 * 0.11793 * 14 13 12 16 16 N 1.30729 * 108.78572 * 359.58180 * 15 14 13 17 17 C 1.51578 * 109.82873 * 179.80266 * 15 14 13 18 18 C 1.54521 * 104.27910 * 343.38810 * 17 15 14 19 19 C 1.47029 * 141.54803 * 180.22447 * 14 13 12 20 20 N 1.31358 * 107.56484 * 0.37313 * 11 10 9 21 21 O 1.21266 * 110.51975 * 359.76187 * 20 11 10 22 22 H 0.97000 * 119.99431 * 359.97438 * 1 2 3 23 23 H 1.08001 * 126.60866 * 359.92126 * 13 12 11 24 24 H 1.09003 * 110.47262 * 224.69550 * 17 15 14 25 25 H 1.09000 * 110.58847 * 102.14331 * 17 15 14 26 26 H 1.09001 * 110.94906 * 267.15926 * 18 17 15 27 27 H 1.08999 * 110.94797 * 143.45378 * 18 17 15 28 28 H 1.08997 * 110.22904 * 316.07420 * 19 14 13 29 29 H 1.09001 * 110.22812 * 78.03186 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6993 1.3463 0.0006 5 1 1.8806 2.3965 -1.2124 6 1 1.8806 2.3964 1.2126 7 6 2.0074 -1.2161 -0.0005 8 1 3.0874 -1.2162 -0.0050 9 6 1.3056 -2.4317 -0.0005 10 7 1.8329 -3.6546 -0.0115 11 6 0.7861 -4.4966 -0.0041 12 6 0.8531 -5.9779 -0.0077 13 6 -0.2068 -6.8269 -0.0054 14 7 0.3039 -8.0959 -0.0109 15 6 1.6548 -7.9889 -0.0138 16 7 1.9767 -6.7219 -0.0193 17 6 2.2800 -9.3698 -0.0150 18 6 1.1309 -10.3088 0.4155 19 6 -0.1145 -9.5054 -0.0164 20 7 -0.3077 -3.7692 0.0025 21 8 -0.0327 -2.5881 0.0046 22 1 -0.4849 0.8401 0.0004 23 1 -1.2515 -6.5529 0.0006 24 1 3.1001 -9.4176 0.7015 25 1 2.6315 -9.6305 -1.0133 26 1 1.1389 -10.4653 1.4942 27 1 1.1848 -11.2594 -0.1151 28 1 -0.9274 -9.6600 0.6930 29 1 -0.4257 -9.8023 -1.0180 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259714112.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:41 Heat of formation + Delta-G solvation = 93.478057 kcal Electronic energy + Delta-G solvation = -16700.313191 eV Core-core repulsion = 13819.313397 eV Total energy + Delta-G solvation = -2880.999794 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.02394 -43.38477 -37.47455 -36.09384 -35.41644 -32.93529 -32.63815 -29.61728 -28.56508 -28.01937 -24.89308 -23.59424 -22.43643 -21.77638 -20.83193 -19.52916 -17.97073 -17.78028 -17.37332 -17.10397 -16.68819 -15.57129 -15.31196 -14.97254 -14.74649 -14.15960 -13.89944 -13.66650 -13.49227 -13.22115 -13.08494 -12.45645 -12.39329 -12.24047 -11.93955 -11.81814 -11.52338 -11.10190 -10.95412 -10.70360 -10.41100 -9.22690 -8.96133 -7.11424 0.53772 1.03985 1.41025 1.41335 1.63262 1.69418 1.79315 2.17014 2.51345 2.72355 3.04492 3.18257 3.36605 3.55365 3.83238 3.97846 4.13458 4.20025 4.46772 4.59603 4.68008 4.88670 4.93423 4.97984 5.10311 5.17377 5.24960 5.64072 5.85716 6.02029 6.08871 6.26478 6.43877 7.03301 8.06690 8.25362 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.072877 B = 0.004574 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.117788 B = 6119.432130 C = 6470.247426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.028 3.972 3 Si 1.026 2.974 4 H -0.250 1.250 5 H -0.254 1.254 6 H -0.254 1.254 7 C -0.431 4.431 8 H 0.120 0.880 9 C 0.269 3.731 10 N -0.627 5.627 11 C 0.241 3.759 12 C 0.048 3.952 13 C 0.018 3.982 14 N -0.481 5.481 15 C 0.180 3.820 16 N -0.506 5.506 17 C -0.037 4.037 18 C -0.110 4.110 19 C 0.091 3.909 20 N -0.482 5.482 21 O 0.021 5.979 22 H 0.307 0.693 23 H 0.192 0.808 24 H 0.107 0.893 25 H 0.116 0.884 26 H 0.096 0.904 27 H 0.145 0.855 28 H 0.110 0.890 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 -16.259 0.170 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.194 4.194 3 Si 0.842 3.158 4 H -0.173 1.173 5 H -0.178 1.178 6 H -0.178 1.178 7 C -0.468 4.468 8 H 0.138 0.862 9 C 0.080 3.920 10 N -0.371 5.371 11 C -0.031 4.031 12 C -0.081 4.081 13 C -0.120 4.120 14 N -0.165 5.165 15 C -0.085 4.085 16 N -0.226 5.226 17 C -0.076 4.076 18 C -0.147 4.147 19 C -0.027 4.027 20 N -0.217 5.217 21 O -0.023 6.023 22 H 0.119 0.881 23 H 0.209 0.791 24 H 0.125 0.875 25 H 0.134 0.866 26 H 0.115 0.885 27 H 0.163 0.837 28 H 0.128 0.872 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.494 -16.477 0.154 16.485 hybrid contribution -0.739 1.084 -0.015 1.312 sum -1.234 -15.393 0.139 15.443 Atomic orbital electron populations 1.69703 1.09721 1.33004 1.29738 1.27439 0.96005 1.05782 0.90190 0.84524 0.78896 0.72625 0.79783 1.17259 1.17791 1.17783 1.19161 0.95667 0.85983 1.46034 0.86232 1.24879 0.80127 0.95061 0.91902 1.72479 1.28728 0.98661 1.37271 1.22723 0.86081 0.94172 1.00114 1.17318 0.90104 0.87496 1.13156 1.22167 0.99498 0.81925 1.08441 1.46843 1.09350 1.06847 1.53429 1.25666 0.84173 0.95111 1.03518 1.69743 1.29951 1.01804 1.21104 1.21013 0.99325 0.81585 1.05724 1.22844 0.88889 0.98682 1.04332 1.22975 1.00958 0.73306 1.05506 1.74476 1.23645 0.90670 1.32893 1.85420 1.25991 1.18280 1.72584 0.88114 0.79073 0.87489 0.86605 0.88509 0.83707 0.87218 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.12 12.05 21.90 0.26 -41.85 15 2 C 0.03 1.38 5.50 85.42 0.47 1.85 15 3 Si 1.03 36.37 29.56 68.60 2.03 38.39 15 4 H -0.25 -8.59 7.11 99.48 0.71 -7.88 15 5 H -0.25 -8.39 7.11 99.48 0.71 -7.68 15 6 H -0.25 -8.38 7.11 99.48 0.71 -7.67 15 7 C -0.43 -24.74 9.48 23.32 0.22 -24.51 15 8 H 0.12 6.50 7.85 -2.91 -0.02 6.47 15 9 C 0.27 17.21 7.80 85.06 0.66 17.88 15 10 N -0.63 -40.75 11.64 -305.00 -3.55 -44.30 15 11 C 0.24 14.64 8.04 137.36 1.11 15.75 15 12 C 0.05 2.43 7.05 40.80 0.29 2.71 15 13 C 0.02 0.71 11.96 83.35 1.00 1.70 15 14 N -0.48 -14.08 3.60 -507.94 -1.83 -15.91 15 15 C 0.18 6.01 8.59 138.19 1.19 7.19 15 16 N -0.51 -24.17 11.29 -176.03 -1.99 -26.15 15 17 C -0.04 -0.63 6.85 30.65 0.21 -0.42 15 18 C -0.11 -0.87 7.16 31.57 0.23 -0.64 15 19 C 0.09 1.24 7.78 86.74 0.67 1.91 15 20 N -0.48 -29.60 12.17 -55.96 -0.68 -30.28 15 21 O 0.02 1.35 9.71 64.35 0.63 1.97 15 22 H 0.31 14.03 8.29 -92.71 -0.77 13.26 15 23 H 0.19 6.76 8.06 -2.91 -0.02 6.74 15 24 H 0.11 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.12 1.53 8.14 -2.39 -0.02 1.51 15 26 H 0.10 0.65 8.14 -2.39 -0.02 0.63 15 27 H 0.14 -0.01 8.14 -2.39 -0.02 -0.03 15 28 H 0.11 1.10 8.14 -2.39 -0.02 1.08 15 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 15 Total: -1.00 -87.70 264.60 2.10 -85.60 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.19 Total: 9.11 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 6.04 Total: 23.42 kcal Atomic # 7 Polarization: -150.72 SS G_CDS: -7.78 Total: -158.50 kcal Atomic # 8 Polarization: 1.35 SS G_CDS: 0.63 Total: 1.97 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.39 kcal Total: -87.70 2.10 -85.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259714112.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.082 kcal (2) G-P(sol) polarization free energy of solvation -87.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds