Wall clock time and date at job start Mon Mar 30 2020 04:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 117.00026 * 2 1 4 4 C 1.38850 * 119.99091 * 0.02814 * 3 2 1 5 5 C 1.38238 * 120.20679 * 179.97438 * 4 3 2 6 6 C 1.38028 * 120.19295 * 359.97438 * 5 4 3 7 7 C 1.39455 * 119.97920 * 0.02562 * 6 5 4 8 8 C 1.48205 * 120.10313 * 179.97438 * 7 6 5 9 9 N 1.31341 * 128.75831 * 144.67729 * 8 7 6 10 10 O 1.20786 * 109.73497 * 179.82426 * 9 8 7 11 11 N 1.20869 * 116.39069 * 0.49693 * 10 9 8 12 12 C 1.32695 * 109.11484 * 359.70046 * 11 10 9 13 13 C 1.41355 * 128.86316 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00698 * 180.02562 * 13 12 11 15 15 C 1.40128 * 119.99813 * 0.04622 * 13 12 11 16 16 N 1.30694 * 119.99876 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00270 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47103 * 89.99571 * 17 15 13 19 19 H 1.48495 * 109.47659 * 210.00090 * 17 15 13 20 20 H 1.48503 * 109.46776 * 330.00335 * 17 15 13 21 21 C 1.38474 * 119.98805 * 179.97438 * 3 2 1 22 22 H 1.09006 * 109.46928 * 299.99641 * 1 2 3 23 23 H 1.09000 * 109.46994 * 59.99495 * 1 2 3 24 24 H 1.08999 * 109.47254 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.89518 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.90010 * 180.02562 * 5 4 3 27 27 H 1.08005 * 120.01215 * 180.28036 * 6 5 4 28 28 H 0.97005 * 119.99905 * 179.97438 * 16 15 13 29 29 H 1.08001 * 120.09935 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3753 0.0006 5 6 1.9125 3.6094 0.0011 6 6 3.2903 3.6914 0.0016 7 6 4.0578 2.5270 0.0010 8 6 5.5374 2.6120 0.0010 9 7 6.4062 1.8245 0.5927 10 8 7.5279 2.2087 0.3623 11 7 7.6264 3.1982 -0.3248 12 6 6.4128 3.6143 -0.6639 13 6 6.0454 4.7267 -1.4549 14 1 5.0025 4.9355 -1.6420 15 6 7.0345 5.5584 -1.9967 16 7 6.6948 6.5866 -2.7284 17 14 8.8385 5.1976 -1.6731 18 1 9.3620 4.3005 -2.7344 19 1 9.6060 6.4688 -1.6763 20 1 8.9816 4.5363 -0.3511 21 6 3.4288 1.2831 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 0.2111 2.3167 0.0006 26 1 1.3193 4.5119 0.0020 27 1 3.7740 4.6571 0.0066 28 1 7.3795 7.1626 -3.1032 29 1 4.0184 0.3782 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259723169.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:12 Heat of formation + Delta-G solvation = 85.876105 kcal Electronic energy + Delta-G solvation = -16943.030345 eV Core-core repulsion = 14029.408155 eV Total energy + Delta-G solvation = -2913.622190 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.66467 -39.80572 -37.24493 -34.42454 -33.18844 -32.40557 -30.57445 -29.60986 -27.40464 -26.93718 -23.54994 -22.31518 -21.24711 -20.55314 -18.02136 -17.46935 -17.12985 -16.35782 -15.90033 -15.63427 -15.52063 -14.85914 -14.05223 -13.49745 -13.22504 -13.11971 -12.55250 -12.35504 -11.94275 -11.50779 -11.44646 -11.19891 -11.04537 -10.82520 -10.68198 -10.34988 -9.88793 -9.72232 -9.04133 -8.51815 -8.23885 -7.85115 -7.07378 -4.94360 1.38546 1.78407 2.75861 2.98228 3.22204 3.37725 3.50869 3.55502 4.16819 4.21348 4.73283 4.93991 4.96224 5.11906 5.19147 5.19989 5.40751 5.43942 5.70039 5.73206 5.78838 5.90891 6.20389 6.41406 6.54952 6.68136 6.80038 7.00228 7.06973 7.10965 7.59619 7.99381 8.06481 8.47291 9.89513 10.42081 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.034289 B = 0.006504 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.403050 B = 4303.822829 C = 4936.602896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.215 4.215 5 C -0.081 4.081 6 C -0.129 4.129 7 C 0.066 3.934 8 C -0.056 4.056 9 N -0.367 5.367 10 O 0.278 5.722 11 N -0.498 5.498 12 C 0.155 3.845 13 C -0.401 4.401 14 H 0.108 0.892 15 C 0.092 3.908 16 N -0.795 5.795 17 Si 0.887 3.113 18 H -0.269 1.269 19 H -0.295 1.295 20 H -0.179 1.179 21 C -0.138 4.138 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.291 0.709 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 -5.136 3.323 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.235 4.235 5 C -0.099 4.099 6 C -0.149 4.149 7 C 0.065 3.935 8 C -0.217 4.217 9 N -0.085 5.085 10 O 0.076 5.924 11 N -0.260 5.260 12 C 0.012 3.988 13 C -0.438 4.438 14 H 0.126 0.874 15 C -0.132 4.132 16 N -0.421 5.421 17 Si 0.712 3.288 18 H -0.194 1.194 19 H -0.222 1.222 20 H -0.102 1.102 21 C -0.158 4.158 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.114 0.886 25 H 0.141 0.859 26 H 0.144 0.856 27 H 0.156 0.844 28 H 0.102 0.898 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.822 -5.873 3.745 11.240 hybrid contribution -0.416 0.698 -0.607 1.014 sum -9.237 -5.175 3.138 11.043 Atomic orbital electron populations 1.22986 0.78942 1.03447 1.01194 1.86055 1.20924 1.27222 1.89218 1.18764 0.91884 0.83976 0.97869 1.21162 0.99492 0.92430 1.10389 1.20803 0.94290 0.96776 0.98063 1.21282 0.93231 0.98702 1.01636 1.17200 0.87649 0.92296 0.96360 1.23673 0.93969 0.97736 1.06321 1.74601 0.93100 1.21963 1.18879 1.84623 1.22497 1.33749 1.51560 1.76151 1.19894 1.06011 1.23939 1.22850 0.85394 0.95495 0.95094 1.18679 0.97098 1.03946 1.24089 0.87411 1.26096 1.03265 0.92714 0.91083 1.69505 1.38041 1.11625 1.22917 0.86639 0.79017 0.77249 0.85870 1.19370 1.22227 1.10216 1.20381 0.91131 0.97932 1.06310 0.92872 0.92813 0.88631 0.85897 0.85648 0.84444 0.89812 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 15 2 O -0.32 -4.73 10.49 -19.45 -0.20 -4.93 15 3 C 0.12 1.97 6.68 -39.27 -0.26 1.71 15 4 C -0.22 -3.13 9.03 -39.35 -0.36 -3.49 15 5 C -0.08 -1.25 10.03 -39.66 -0.40 -1.64 15 6 C -0.13 -2.41 9.05 -39.21 -0.35 -2.76 15 7 C 0.07 1.38 5.87 -104.92 -0.62 0.76 15 8 C -0.06 -1.33 7.22 -79.63 -0.57 -1.90 15 9 N -0.37 -8.69 12.24 33.96 0.42 -8.28 15 10 O 0.28 6.74 11.62 27.29 0.32 7.06 15 11 N -0.50 -12.69 7.18 32.89 0.24 -12.45 15 12 C 0.15 3.96 6.86 -81.96 -0.56 3.40 15 13 C -0.40 -10.44 9.47 -37.69 -0.36 -10.80 15 14 H 0.11 2.81 6.68 -52.49 -0.35 2.46 15 15 C 0.09 2.36 5.52 -17.33 -0.10 2.27 15 16 N -0.80 -20.38 13.92 55.56 0.77 -19.61 15 17 Si 0.89 20.58 26.73 -169.99 -4.54 16.04 15 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 20 H -0.18 -4.26 5.21 56.52 0.29 -3.96 15 21 C -0.14 -2.61 9.72 -39.07 -0.38 -2.99 15 22 H 0.05 0.45 7.66 -51.93 -0.40 0.05 15 23 H 0.05 0.47 7.66 -51.93 -0.40 0.07 15 24 H 0.10 0.69 8.14 -51.93 -0.42 0.27 15 25 H 0.12 1.39 6.28 -52.49 -0.33 1.06 15 26 H 0.13 1.55 8.06 -52.48 -0.42 1.13 15 27 H 0.14 2.65 6.78 -52.48 -0.36 2.30 15 28 H 0.29 6.81 8.29 -40.82 -0.34 6.47 15 29 H 0.13 2.45 8.06 -52.49 -0.42 2.02 15 LS Contribution 258.46 15.07 3.89 3.89 Total: -1.00 -28.30 258.46 -4.42 -32.72 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -2.34 Total: -0.27 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -2.96 Total: -14.17 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 1.43 Total: -40.34 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.11 Total: 2.13 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.54 Total: 16.04 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.30 -4.42 -32.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723169.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.595 kcal (2) G-P(sol) polarization free energy of solvation -28.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds