Wall clock time and date at job start Mon Mar 30 2020 04:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 117.00026 * 2 1 4 4 C 1.38850 * 119.99091 * 0.02814 * 3 2 1 5 5 C 1.38238 * 120.20679 * 179.97438 * 4 3 2 6 6 C 1.38028 * 120.19295 * 359.97438 * 5 4 3 7 7 C 1.39455 * 119.97920 * 0.02562 * 6 5 4 8 8 C 1.48205 * 120.10313 * 179.97438 * 7 6 5 9 9 N 1.31341 * 128.75831 * 144.67729 * 8 7 6 10 10 O 1.20786 * 109.73497 * 179.82426 * 9 8 7 11 11 N 1.20869 * 116.39069 * 0.49693 * 10 9 8 12 12 C 1.32695 * 109.11484 * 359.70046 * 11 10 9 13 13 C 1.41355 * 128.86316 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00698 * 180.02562 * 13 12 11 15 15 C 1.40128 * 119.99813 * 0.04622 * 13 12 11 16 16 N 1.30694 * 119.99876 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00270 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47103 * 89.99571 * 17 15 13 19 19 H 1.48495 * 109.47659 * 210.00090 * 17 15 13 20 20 H 1.48503 * 109.46776 * 330.00335 * 17 15 13 21 21 C 1.38474 * 119.98805 * 179.97438 * 3 2 1 22 22 H 1.09006 * 109.46928 * 299.99641 * 1 2 3 23 23 H 1.09000 * 109.46994 * 59.99495 * 1 2 3 24 24 H 1.08999 * 109.47254 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.89518 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.90010 * 180.02562 * 5 4 3 27 27 H 1.08005 * 120.01215 * 180.28036 * 6 5 4 28 28 H 0.97005 * 119.99905 * 179.97438 * 16 15 13 29 29 H 1.08001 * 120.09935 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3753 0.0006 5 6 1.9125 3.6094 0.0011 6 6 3.2903 3.6914 0.0016 7 6 4.0578 2.5270 0.0010 8 6 5.5374 2.6120 0.0010 9 7 6.4062 1.8245 0.5927 10 8 7.5279 2.2087 0.3623 11 7 7.6264 3.1982 -0.3248 12 6 6.4128 3.6143 -0.6639 13 6 6.0454 4.7267 -1.4549 14 1 5.0025 4.9355 -1.6420 15 6 7.0345 5.5584 -1.9967 16 7 6.6948 6.5866 -2.7284 17 14 8.8385 5.1976 -1.6731 18 1 9.3620 4.3005 -2.7344 19 1 9.6060 6.4688 -1.6763 20 1 8.9816 4.5363 -0.3511 21 6 3.4288 1.2831 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 0.2111 2.3167 0.0006 26 1 1.3193 4.5119 0.0020 27 1 3.7740 4.6571 0.0066 28 1 7.3795 7.1626 -3.1032 29 1 4.0184 0.3782 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259723169.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:12 Heat of formation + Delta-G solvation = 68.877262 kcal Electronic energy + Delta-G solvation = -16943.767470 eV Core-core repulsion = 14029.408155 eV Total energy + Delta-G solvation = -2914.359315 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.57640 -41.01324 -38.50872 -36.34499 -34.95800 -34.34835 -31.94103 -30.98343 -29.13932 -28.04088 -25.13856 -23.90633 -22.86559 -22.14189 -19.50296 -19.31978 -19.04577 -18.05086 -17.10476 -16.82851 -16.68249 -16.61162 -15.64269 -15.08953 -14.68490 -14.46483 -14.17023 -13.80152 -13.38323 -13.16279 -12.99408 -12.81168 -12.70555 -12.29199 -12.08937 -11.83404 -11.74511 -11.47464 -10.92581 -10.42253 -9.72758 -9.17608 -9.02592 -6.93218 -0.07489 0.45643 0.84501 1.20787 1.34266 1.61451 1.67484 2.31304 2.33717 2.76455 2.96114 3.07735 3.57345 3.81060 3.87834 4.05139 4.28122 4.32667 4.46084 4.49018 4.53494 4.65059 4.77723 4.86468 4.99611 5.11130 5.26685 5.44782 5.64741 5.74590 5.97110 6.09810 6.45606 6.49278 7.98348 8.49599 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.034289 B = 0.006504 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.403050 B = 4303.822829 C = 4936.602896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.123 3.877 4 C -0.195 4.195 5 C -0.070 4.070 6 C -0.143 4.143 7 C 0.030 3.970 8 C -0.044 4.044 9 N -0.371 5.371 10 O 0.266 5.734 11 N -0.505 5.505 12 C 0.138 3.862 13 C -0.418 4.418 14 H 0.099 0.901 15 C 0.065 3.935 16 N -0.814 5.814 17 Si 0.932 3.068 18 H -0.276 1.276 19 H -0.277 1.277 20 H -0.193 1.193 21 C -0.153 4.153 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.119 0.881 25 H 0.167 0.833 26 H 0.163 0.837 27 H 0.122 0.878 28 H 0.302 0.698 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 -5.315 3.510 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.078 3.922 4 C -0.214 4.214 5 C -0.088 4.088 6 C -0.163 4.163 7 C 0.029 3.971 8 C -0.207 4.207 9 N -0.092 5.092 10 O 0.068 5.932 11 N -0.266 5.266 12 C -0.006 4.006 13 C -0.455 4.455 14 H 0.117 0.883 15 C -0.156 4.156 16 N -0.441 5.441 17 Si 0.756 3.244 18 H -0.202 1.202 19 H -0.204 1.204 20 H -0.116 1.116 21 C -0.174 4.174 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.137 0.863 25 H 0.185 0.815 26 H 0.180 0.820 27 H 0.140 0.860 28 H 0.113 0.887 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.227 -6.054 3.938 13.350 hybrid contribution 0.092 0.646 -0.636 0.911 sum -11.135 -5.409 3.303 12.812 Atomic orbital electron populations 1.23411 0.75983 1.05736 1.02654 1.86050 1.23919 1.26375 1.88778 1.18796 0.91134 0.85505 0.96786 1.21619 1.01533 0.91031 1.07227 1.21192 0.92879 0.98774 0.95970 1.21292 0.94886 0.97293 1.02791 1.17306 0.86150 0.93933 0.99738 1.24202 0.95639 0.96378 1.04446 1.74579 0.92992 1.22294 1.19350 1.84592 1.22823 1.33713 1.52056 1.76105 1.20178 1.06361 1.24004 1.23040 0.86045 0.96017 0.95485 1.18706 0.97000 1.04724 1.25104 0.88271 1.26566 1.05348 0.92674 0.91046 1.69488 1.39235 1.12037 1.23342 0.85967 0.76476 0.77432 0.84553 1.20152 1.20357 1.11598 1.20317 0.92747 0.96741 1.07548 0.91176 0.91356 0.86262 0.81532 0.81970 0.85964 0.88693 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 15 2 O -0.34 -9.00 10.49 -92.51 -0.97 -9.97 15 3 C 0.12 3.76 6.68 22.47 0.15 3.91 15 4 C -0.20 -4.86 9.03 22.42 0.20 -4.66 15 5 C -0.07 -1.94 10.03 22.22 0.22 -1.71 15 6 C -0.14 -5.26 9.05 22.51 0.20 -5.06 15 7 C 0.03 1.26 5.87 -20.06 -0.12 1.15 15 8 C -0.04 -2.15 7.22 44.69 0.32 -1.82 15 9 N -0.37 -18.02 12.24 -49.86 -0.61 -18.63 15 10 O 0.27 13.20 11.62 140.96 1.64 14.84 15 11 N -0.50 -26.24 7.18 -52.59 -0.38 -26.61 15 12 C 0.14 7.24 6.86 42.60 0.29 7.53 15 13 C -0.42 -22.25 9.47 23.50 0.22 -22.02 15 14 H 0.10 5.32 6.68 -2.91 -0.02 5.30 15 15 C 0.07 3.38 5.52 85.32 0.47 3.85 15 16 N -0.81 -41.71 13.92 21.85 0.30 -41.41 15 17 Si 0.93 42.70 26.73 68.60 1.83 44.53 15 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 19 H -0.28 -11.77 7.11 99.48 0.71 -11.07 15 20 H -0.19 -9.16 5.21 99.48 0.52 -8.64 15 21 C -0.15 -5.79 9.72 22.60 0.22 -5.57 15 22 H 0.07 0.84 7.66 -2.38 -0.02 0.82 15 23 H 0.07 0.85 7.66 -2.39 -0.02 0.83 15 24 H 0.12 1.23 8.14 -2.39 -0.02 1.21 15 25 H 0.17 2.71 6.28 -2.91 -0.02 2.69 15 26 H 0.16 3.26 8.06 -2.91 -0.02 3.24 15 27 H 0.12 4.81 6.78 -2.91 -0.02 4.79 15 28 H 0.30 13.96 8.29 -92.70 -0.77 13.19 15 29 H 0.12 4.53 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -61.74 258.46 6.12 -55.62 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.00 Total: 4.69 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 3.30 Total: -23.06 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -0.68 Total: -86.66 kcal Atomic # 8 Polarization: 4.20 SS G_CDS: 0.67 Total: 4.87 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.83 Total: 44.53 kcal Total: -61.74 6.12 -55.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723169.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.498 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds